Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0493900 |
| Transcript ID | LotjaGi3g1v0493900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | BTB/POZ domain-containing family protein; TAIR: AT2G46260.1 BTB/POZ/Kelch-associated protein; Swiss-Prot: sp|O82343|Y2626_ARATH BTB/POZ domain-containing protein At2g46260; TrEMBL-Plants: tr|A0A0B0N127|A0A0B0N127_GOSAR BTB/POZ domain-containing POB1-like protein; Found in the gene: LotjaGi3g1v0493900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:91220062..91221887) extracted from Lotus japonicus Gifu genome v1.2.
GGAAAGTGGGAAAATAATCTCAATATTGATATTGATGATATCTCATTATACTCTAATCTATTTATAATCGAACCTACCTG AATCCTACTCTTAATCCGAAGTTATTTGTCATCTTTTTCAGGGTTTCTTTTCTTGTGGTTCTCAACTGAGGGAGGGAAGT AAAGTAAGAACACGGCGGTATTGATGATGGAGCCCACGTGCTCCTGTGGTGCCGATTTTGGCTTTGCTTTCAATCACAAC AATTTCTCCGACGCTGTTCTCCGGATCGAGATCATGACGGACCCGGTTGATAGCGCCACTGCCATCGCTGATTGCCTTTG CCAAGGCAAGAGGAAACGCGATGAAGAATTATTCCCTTCTGGTACTATTGTCAGGGTTGAAACACTGCATATCAGTTCTA CTATCCTGGCCGATAAAAGTCCCTTTTTCTTCAAGCTTTTCTGGATGAAGGAGTTAAATCAGACCCTCAAGATTAATGCA TCTGAAGAAGCTGCTTTCATGGAGCTACTCAATTTCATGTACTGTAATACATTGATTGTTACTGCAGCACCTGCTTTGTT GGATGTGCTTGTAACTGCTGATAAATTTGAAGTCTCTTCATGCATGAGATACTGTACCCAGTTATTGCTAAATTTCCCCA TGACACCTGAATCTGCGTTACGTTACCTGGAACTTCCTGATACTGTTTTAATGGCTGATGCAATACAACCATTGGTTGAT GCTGCAAAGCAGTATGTTGTAGGCAGATATAAGAATATAACCAAGTTCCAGGAAGAGGTTATGGCCTTGCCTCTTTCTGG AATAGAGGCAATATTGGCTAGCGATGATCTCCAGGTTCCATCAGAAGATGCTGTATATGACTTTGTTTTAAAGTGGGCTA GAAAACACTACAACAAACAGACAGAAAGGCGAGGAGTTTTGAGTACACGCCTTGTGTGTTTAATTCGCTTCCCTTATATG ACATGTAGAAAGCTTAGGGAGGTTTTATCATGTATTGACTTTAGACATAAAGATGTATTTGAGCTTGTTCGTGAAGCCCT AATTTTCAAGGCGGAGGCTCCACATGGTCAATGGTTACTAGCAGCAAAAGAGCCTGTTTCTTTGAAACATCGTTTCGTGC AGAGGGCATATAAGTATCACTCCGTTAAGGTGGTAAAATTTGAACTTCCACAACAGCGGTGTGTGGTGTATTTGGATCTG AAGCGGGAGGAGTGTGCCAGTTTGTTCCCATCTGGGCGGTTGTCATCTCAAGCATTCCATTTGGGTGGACAATGGTATTT TCTATCAGCACAATGCAACCTGGACCAACATGACTCTTTCCATTGCTTTGAGCTGTTTGTAGCAATGAAGAGAAATGGCC CGGGAGGCTTTGCTCTGGTGGAATGTGAATTTGCAGTAAGGTGTAAGCCAACAGAGGAGTTTGTTGTTAGCAAGAAAATG GCCAAAAAGAAATTCACTGGGGGAGATATGTTTGGCCGTAGAAACTTGTTTGCAACTCCATGGACTTCATTCATAGCTGA TGATAGTCCTTTCTTCATCAACGGTGTTCTCCACCTCAAAGCTGAGCTCACCATCAGACATTAATCCCTTACTTTTGATT CTAGTTGGTAGCTAGCCTCGACTTTTAGAGGATGATTTCTCTTTATATATTTGACTGCCATGCATTTCTGTAAATATGAT ATTATTACTCTTGAAAGTATGGACTAGCTATTAGAACTTGGCAAATAAGAGAATAGTTTTAAAACCAAAAAAGAACTTCA AGTAAAAGGCCGGTAGTTTTCTTGTTTATGTCTATAGAAGATCAAGTAAAAAAGTGAGTGCAAACT
CDS sequence (LotjaGi3g1v0493900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGGAGCCCACGTGCTCCTGTGGTGCCGATTTTGGCTTTGCTTTCAATCACAACAATTTCTCCGACGCTGTTCTCCG GATCGAGATCATGACGGACCCGGTTGATAGCGCCACTGCCATCGCTGATTGCCTTTGCCAAGGCAAGAGGAAACGCGATG AAGAATTATTCCCTTCTGGTACTATTGTCAGGGTTGAAACACTGCATATCAGTTCTACTATCCTGGCCGATAAAAGTCCC TTTTTCTTCAAGCTTTTCTGGATGAAGGAGTTAAATCAGACCCTCAAGATTAATGCATCTGAAGAAGCTGCTTTCATGGA GCTACTCAATTTCATGTACTGTAATACATTGATTGTTACTGCAGCACCTGCTTTGTTGGATGTGCTTGTAACTGCTGATA AATTTGAAGTCTCTTCATGCATGAGATACTGTACCCAGTTATTGCTAAATTTCCCCATGACACCTGAATCTGCGTTACGT TACCTGGAACTTCCTGATACTGTTTTAATGGCTGATGCAATACAACCATTGGTTGATGCTGCAAAGCAGTATGTTGTAGG CAGATATAAGAATATAACCAAGTTCCAGGAAGAGGTTATGGCCTTGCCTCTTTCTGGAATAGAGGCAATATTGGCTAGCG ATGATCTCCAGGTTCCATCAGAAGATGCTGTATATGACTTTGTTTTAAAGTGGGCTAGAAAACACTACAACAAACAGACA GAAAGGCGAGGAGTTTTGAGTACACGCCTTGTGTGTTTAATTCGCTTCCCTTATATGACATGTAGAAAGCTTAGGGAGGT TTTATCATGTATTGACTTTAGACATAAAGATGTATTTGAGCTTGTTCGTGAAGCCCTAATTTTCAAGGCGGAGGCTCCAC ATGGTCAATGGTTACTAGCAGCAAAAGAGCCTGTTTCTTTGAAACATCGTTTCGTGCAGAGGGCATATAAGTATCACTCC GTTAAGGTGGTAAAATTTGAACTTCCACAACAGCGGTGTGTGGTGTATTTGGATCTGAAGCGGGAGGAGTGTGCCAGTTT GTTCCCATCTGGGCGGTTGTCATCTCAAGCATTCCATTTGGGTGGACAATGGTATTTTCTATCAGCACAATGCAACCTGG ACCAACATGACTCTTTCCATTGCTTTGAGCTGTTTGTAGCAATGAAGAGAAATGGCCCGGGAGGCTTTGCTCTGGTGGAA TGTGAATTTGCAGTAAGGTGTAAGCCAACAGAGGAGTTTGTTGTTAGCAAGAAAATGGCCAAAAAGAAATTCACTGGGGG AGATATGTTTGGCCGTAGAAACTTGTTTGCAACTCCATGGACTTCATTCATAGCTGATGATAGTCCTTTCTTCATCAACG GTGTTCTCCACCTCAAAGCTGAGCTCACCATCAGACATTAA
Protein sequence (LotjaGi3g1v0493900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMEPTCSCGADFGFAFNHNNFSDAVLRIEIMTDPVDSATAIADCLCQGKRKRDEELFPSGTIVRVETLHISSTILADKSP FFFKLFWMKELNQTLKINASEEAAFMELLNFMYCNTLIVTAAPALLDVLVTADKFEVSSCMRYCTQLLLNFPMTPESALR YLELPDTVLMADAIQPLVDAAKQYVVGRYKNITKFQEEVMALPLSGIEAILASDDLQVPSEDAVYDFVLKWARKHYNKQT ERRGVLSTRLVCLIRFPYMTCRKLREVLSCIDFRHKDVFELVREALIFKAEAPHGQWLLAAKEPVSLKHRFVQRAYKYHS VKVVKFELPQQRCVVYLDLKREECASLFPSGRLSSQAFHLGGQWYFLSAQCNLDQHDSFHCFELFVAMKRNGPGGFALVE CEFAVRCKPTEEFVVSKKMAKKKFTGGDMFGRRNLFATPWTSFIADDSPFFINGVLHLKAELTIRH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 8 | 49 | 42 | 8.2E-201 | – | |
| PANTHER | 8 | 49 | 42 | 8.2E-201 | – | |
| Gene3D | 15 | 150 | 136 | 3.2E-11 | – | |
| SMART | 22 | 152 | 131 | 6.2E-8 | ||
| ProSiteProfiles | 52 | 121 | 70 | 9.289 | ||
| PANTHER | 60 | 466 | 407 | 8.2E-201 | – | |
| PANTHER | 60 | 466 | 407 | 8.2E-201 | – | |
| SUPERFAMILY | 60 | 150 | 91 | 2.3E-9 | ||
| CDD | 62 | 135 | 74 | 6.84915E-7 | – | |
| Pfam | 66 | 149 | 84 | 1.5E-9 | ||
| Gene3D | 155 | 280 | 126 | 1.8E-12 | – | |
| SMART | 167 | 269 | 103 | 1.6E-10 | ||
| CDD | 170 | 260 | 91 | 3.92156E-10 | – | |
| Pfam | 175 | 267 | 93 | 2.2E-9 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0493900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…