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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0494200 |
| Transcript ID | LotjaGi3g1v0494200.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cytochrome C-type biogenesis protein CcmE; TAIR: AT3G51790.1 transmembrane protein G1P-related 1; Swiss-Prot: sp|Q2RYF4|CCME_RHORT Cytochrome c-type biogenesis protein CcmE; TrEMBL-Plants: tr|A0A1J7G785|A0A1J7G785_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0494200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:91240072..91245610) extracted from Lotus japonicus Gifu genome v1.2.
CTGTTCCGTATGATCCATCTCTTTTCCTCCGTCCAATTCATCCAGAGAGAAAAATCATGTCCGAAACTTCTCAGTTGCAT CCTGTTTTCAGTAATGGCGGCCTCACTTAATCCAAAACCCTAAACCCTCTACTTAGAAAATTCCCACTCCTCAATTTTCC CGAGAAAATTCAAATGGCCTCTAAACTCGCTCTCCGATTCAGATCCCATCTCCTCCGCACCACCTCACTCTTCCACCGAC AACAACTATTTAAACCCCCGCCGCCGCCGTCGCTCCTTGCTTCGCTACCGGAAGCCCTTTCAACCCGCCAATACTTCGCC CTCTCCGGCCACCGCTTTCTCTCCACAGCTCGCCGCCAGCCGCCGCGATCCAAGAAACACGTGGACATCGGCGCGCGAGC CCGGCAGCTCCAGAACCGCCGCCTCTGGACCTACGCGCTAACCTTCGGGTGCGTGGCGGGGTTCATCGTAGTCGTGCTCA ACAACTTCCAGGACCAGTTGGTGTTCTACGTTACCCCAACCGACATGCTCGAGAAGCACCGCAGCAACCCTTCCAAGGCG AAGTTCCGGTTAGGGGGTCTCGTCCTTGAGGGGAGCGTGGTGTACCCTTCTTCTTCCCCTGGTGTGGAATTCGTGGTCAC CGATTTGATCACCGATATCGTGGTCCGGCATGAGGGTTCTCTGCCGGATTTGTTCAGGGAAGGGCACTCGGTGGTTGTTG AAGGGTTTGTGAAGCCTTTCACGGTGGAGATCAAGAATGAAGTGTCGGCGAAGAGCGTCGCCGCGAAGGCTAGGACTGGA GAGTGTTATTTTGCGGCTACTGAGGTTCTTGCTAAGCATGATGAGAAGTATATGCCTAAAGAGGTTGCTGCGGCGATTGA GAAGAATAAGAAGATTATTGAGGAGGCTGCCGGTGAGTCAGTGGAGGAAACAACCGCCTCTTAGATGGACTGGTACCACC CCAACTTTGAATTTTGATTTAGCATTTTTTGGGGGATTATATTACAGTGTTATGATTATTTTTGGAGGGATTTGGAATAT TTAACTATAGGCTGAGAAATTTTTGTGGTAATAATTAGGATGAATTGAATACATTGGTATAGGAGAATGAGGATAATGGA AATGGACAAATTTGATTGTTTATGAGGCAACTATGTCTTGTTGTTGTAATGCATTATTGAGCAGTGATGTTTCTGAATAA ATATTTACAGGGTTCTAACAGAATGGTGATTTGGTTTTTATTTCATATTTTATCCTCAAAATACTGTTAGGTTTGTCTTG CCAATACAATTTAGGTAGATTGCATACACTTTGAGAAGGAGATATTTTGTGCTGGAATTAGGTTTATACTCTTGCCCTCT AGCTTGATATGGTAATCTCGTTGAGCCTGTTTTGTTGATGATTTGAACTCTTAAGTCTCACCTGTTACTGGTACCGTGTT GTCTCAGAAGTTCATCTGATTCTGCATTTACAATAAGATTGTGTTTCAAGCCACCTTTCATAGCAAAACTGAAGTTAGTG TGATGTTTTGTTTTGTATCATTAGGTTAATTACTTGCTATAATGTTTGAAGCGCGAAATTCCAGAGTATCTAGGTACATA AACCAAGGTTGTAGACTTGTAGGGCCTTGAACTTAATTTGATGATTATAATCTGCTGCAATTTGGAAACTAGAGTCTTTT TTTTTTCTAGTGAAATTTGGAATCCAATGATAAGACACATGTAAGGTTTATGAGCTATGACAGTTTATGGGCAAGAGACT GAGTTCAGTTTTGCAGCACTTAGGGTTTAGTGGGGAGAATATCGAGATTTTCATTGTAGGATCCTGGTTGTTTCAAGAGT ATATACAGTGTACAAGGCACTCAAGTTGGGTACTTGGGCTGTGCATAACCTTCTTTGTAAGTGGGAAAAACAGAGGAGGT GTGGGGTTTAAGAGATATAACTGTGACCAAGCATTTGAGAAACATTCAGTTGAGATGTACTACCACATTATTTTGATTTT CCAACTTTTATTTAAAATGACTGCTAACTATGATAAAAGAGAGTAAGCGGTCTAAAAGATTTGGTCACGAGTCACGACTC AGGAATGATTGAGAACAACCCTGAAACACTGCAGTTGGCTTTAAAGAGTTCTGCTAATGACAGCAGAATGTGTATGGATG ATCTAAGAAGCACTGATACTTTAATATGGGTTTCATTTAAATGATCCATGCTATGATGTAGATACCTTTGGGATACTTTT TGATACTTTTACCCTGCTAGACTCTCTTATACTCACTTTTTAGATATTCATCAGCTCATTTCTCTCTCCCTCTCTGTATT GTCCTTCCCCAAATGGGAAGTGAGCATTCTTTTGTACTCTTTCTTCCCTCACAGAAAGTCAAATAGTGTCTAGAGTTAAA GGAGCACAAGCTCATCACAACTGTGGCAGCATTTCCTAAGTCTTCTTTTGGTTGGTTTGCAATTAATATTACTATTTGCT TGTGTTATGTGTCAAATTAGTAGATTCTGGCTTGTTGTTAGTGCTGGACCCTCAGCAAATGAATGGATGAACCCGGATAC TTTGGGTGGGAATTTTCAATTCTTCAATCATGAGTTAAATCCTTTTCTGTTTGTATCCAATGGATTTTTGTCTAAGATTA GGGGGTCCGGGTCCTCTAAAGTAAGAGAGTCACTTTAGAGGGTAAAGTAAATCATCTTCGTCATTGATTGAGTTGCTTCA TTGACTTTTTAAAGTAGGTAGTCATTATTAATGGTTGTGATGCTTTAATTTACCCTCTAAAGTGAATGAGAGGAGCCAAA CCCAAGATTAGGATAACAGTGGAAATATGCTTGGGAGTGGTGGTGGTGGTTGTTGTTAAGATCAGGATTGTAAGTACTTT TTTACAATGGTTGGAAACCGGGAGATATGGTTTCTAAGTTCCTTTTTCATTGTCTTTTCCATGGCAACTACTATACTTTT GTGCATAGAAGGTTGTGACATATTCAGCTAGAGTGACAAGTAGCAATACTGACATTTGAGTACAGAATTTCAATTTCTGT AATATTAACCAGATTTAGGTTTAAACATTATTCTAGTTTTGGTTAATATTCTAGTTTTGGTTAACTAGACTTTAGAAATC ATCATTCTGGAACTGGGTTTGCTTTTTGTTATCTTTTGGACAAGTAATGTAGATAGCAATGCAGTTTATATACTTATGTC ATGTTGAATGTGCTCAGAAGAGTAATAACTCATTAACTCGTGCTGTTGAGGCAAAGGATATATGACAATGAGTTATATGC ATTAGCCGGTGATAAATTCACATCTAAGAATCTCGGTGATAATTATTGGTCCTAGCGCTTAATTGATAATGTATTAGAAT TGATTTTTAAAAATCCTTCTAAAATTGTCTTCTAAAGTAAAAAATTATTTCGGGGAGAAGCTTCAGGGTGTTATAAGAAT TCAATTTGAGGAAGGAGAAGTTGATAGATACAATCGTGTTATTTCTGTTATCTTGCATGACCTAGGTTTGACACTATTTG TGTATGCGTTTCAGATCCTTCAAAATTCAAATGGCCATTTGGTAAAAATCTAAAATTCTTACTATCATGTTTTTTCTCCT GGAATCTGAGCAAGCAACAATGTTAAACAAGCTAAAACTCATGTATTCATGGGCGTCTTCATTTTTTCCACTTCAGGGAC TAAAATAAACAGTTCATGTTCGTGGTGTGTGGAGTAGTCATTGATTCCGAAGCTTTTCATGTGTTTCTTCTGTCTTTATC AAGCTTACTTCTACCTTAGTTTCTTCTGTCTTTAAAATACTTATTCAATTTTCTCAGTTGGTCAAACCAATGTTAGACTA GAAGATGATAAAACATACTTGACACCAGAAATTTGAAATTCAATATTGTAATAAATCATACCCTAACCAATAATTAGGGG AAAAGCATGAAGATAATACAATAACAATCTGTCACCAGCCAGCCACAAGTCCACCCACCATAACCCCTAGACCCCCCTCC ATTTAGAATAGAATGAATAGATAAAAAAAAACAGAATCTGAAAATTAATGAAGAATTGAAGAGAGTAGATATGTCTCAGT ACATTAGGGAAACTCAATGGCGTAGAAGGCCAAGGAGAGAAAGAAGCAGAGAAGAGAAAACAAAAGCTCCAGAATAAGTC ACCATAGCTCCAGCTCCAACATCCGGTGATGGTGCCGGCGCTTCAGACTGCCCCTTCACCTCAGTAGCAAAGAGAAGCCC CACAACCAAGACCATGAAGAAGAACACTGCTCTGGTGTTGCTAATGTGAGCCATTTTTCTCAAATGCAAAGAGATGAAAA GAAAGATGATAGCTACTTGGATAGCTTAAGCTTGGATAGAGAGGTAGTGTGAATTGTTTTGCTATCTCTGTATTGTGTTG TTTGAAGAGAAACAAGACTCTTATTTATAGGCTGCAACACTTCAAATTATTTTGAGGTCACTAATTTATTAATATTAAAT GATAACGTCTCTATGCTTTGAATCATTTGGTTGTTGTTGTAGGACCCGCTCACAGACTGACAGACAGGTCATCTTCTTCT TTTGTTTCCTGTAGTGGGTCCCTTCATGCTGGCTCCAAACGGCTATGAATTATGATCATTAAAAAATTAAACGGCTATGT TTTTTTTTTCCTTTTTCTTTTATGTAAAAATCAACGGTTATGCAGCTACGTGTCAGAAATATCTGGTGGTGCACCATAGG CATTGCAGATGAGTGAACCAGGGAAAATGGTCATTCACACCGAGTGATTTTTTCTGAAAATACATGAGCCTATTTTGACA AGTATTTTTCCAGCTGCTGTATTTCTATATCATTTCAATAAACTCTTCAATTCATTAGTGTTGGAATTACTTTTTTCTTT GCAATTCATTGAACATTACTTTGGTAGTTTGGTTGATATTACCGATCGTACTATCAAGTGTGTAGCGTTAGCTTAGTGTA GGTTAAACATACGATTATCGGCACATTAGCTTCGAATCTTTAGACGACAGACTTGGCTTCGACATTAAAGTAGGTATAGT ATCAATTTTTGACTTGTTAGCATCGAATTTTAGTCGAGGTTAATGCACATTTTTCTTATAGTATATTTAAATAAGGAATA TTAGTAGTTTTGCTTGTACAAATTGATGGTTGGTTCGAGTGATACATGGTTGATTCTCCTAAACAATATCTCAAATTCAA GTATTGTGTATGGAAGAAACCCTAGCTGAAAGAGCTAGACCCATTAAAATCTAAATGTACCTCATTGGCTAGAACATGTT GTCTTTAGTGGAAAGTATCATATCAGACCAGAAATATAGGGATTTGGCTCGTCTACACTGTGTGGATTCACTTTAGATGA TAAAGTAAGAATCATAACAATTACTCGCTCCGTTCCTATTTAACTGTCCGGGAAGAGAAGAAACACACATATTAAGGACT ACAACTGATTTTGTTGGTTTTCATAAAAGTAGTATTTGTTTTTCATTTTGACCCTTTACATTGAATTTTATCTTTATTCA TTTATTGTTTTGATAAGGG
CDS sequence (LotjaGi3g1v0494200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCTCTAAACTCGCTCTCCGATTCAGATCCCATCTCCTCCGCACCACCTCACTCTTCCACCGACAACAACTATTTAA ACCCCCGCCGCCGCCGTCGCTCCTTGCTTCGCTACCGGAAGCCCTTTCAACCCGCCAATACTTCGCCCTCTCCGGCCACC GCTTTCTCTCCACAGCTCGCCGCCAGCCGCCGCGATCCAAGAAACACGTGGACATCGGCGCGCGAGCCCGGCAGCTCCAG AACCGCCGCCTCTGGACCTACGCGCTAACCTTCGGGTGCGTGGCGGGGTTCATCGTAGTCGTGCTCAACAACTTCCAGGA CCAGTTGGTGTTCTACGTTACCCCAACCGACATGCTCGAGAAGCACCGCAGCAACCCTTCCAAGGCGAAGTTCCGGTTAG GGGGTCTCGTCCTTGAGGGGAGCGTGGTGTACCCTTCTTCTTCCCCTGGTGTGGAATTCGTGGTCACCGATTTGATCACC GATATCGTGGTCCGGCATGAGGGTTCTCTGCCGGATTTGTTCAGGGAAGGGCACTCGGTGGTTGTTGAAGGGTTTGTGAA GCCTTTCACGGTGGAGATCAAGAATGAAGTGTCGGCGAAGAGCGTCGCCGCGAAGGCTAGGACTGGAGAGTGTTATTTTG CGGCTACTGAGGTTCTTGCTAAGCATGATGAGAAGTATATGCCTAAAGAGGTTGCTGCGGCGATTGAGAAGAATAAGAAG ATTATTGAGGAGGCTGCCGGTGAGTCAGTGGAGGAAACAACCGCCTCTTAG
Protein sequence (LotjaGi3g1v0494200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASKLALRFRSHLLRTTSLFHRQQLFKPPPPPSLLASLPEALSTRQYFALSGHRFLSTARRQPPRSKKHVDIGARARQLQ NRRLWTYALTFGCVAGFIVVVLNNFQDQLVFYVTPTDMLEKHRSNPSKAKFRLGGLVLEGSVVYPSSSPGVEFVVTDLIT DIVVRHEGSLPDLFREGHSVVVEGFVKPFTVEIKNEVSAKSVAAKARTGECYFAATEVLAKHDEKYMPKEVAAAIEKNKK IIEEAAGESVEETTAS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 252 | 252 | 2.6E-119 | – | |
| Phobius | 1 | 83 | 83 | - | – | |
| PANTHER | 1 | 252 | 252 | 2.6E-119 | ||
| Hamap | 77 | 239 | 163 | 25.026 | ||
| Pfam | 80 | 229 | 150 | 2.6E-43 | ||
| Phobius | 84 | 105 | 22 | - | – | |
| TMHMM | 84 | 106 | 23 | - | – | |
| Gene3D | 105 | 203 | 99 | 7.1E-22 | – | |
| SUPERFAMILY | 105 | 234 | 130 | 6.02E-28 | ||
| Phobius | 106 | 256 | 151 | - | – | |
| Gene3D | 204 | 235 | 32 | 3.3E-5 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Plasma membrane | The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. | ||
| Biological process | Protein-heme linkage | The covalent linkage of heme and a protein. | ||
| Biological process | Cytochrome complex assembly | The aggregation, arrangement and bonding together of a cytochrome complex. A cytochrome complex is a protein complex in which at least one of the proteins is a cytochrome, i.e. a heme-containing protein involved in catalysis of redox reactions. | ||
| Molecular function | Heme binding | Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. |
Expression pattern of LotjaGi3g1v0494200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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