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LotjaGi3g1v0494200.2

Overview

Field Value
Gene ID LotjaGi3g1v0494200
Transcript ID LotjaGi3g1v0494200.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Cytochrome C-type biogenesis protein CcmE; TAIR: AT3G51790.1 transmembrane protein G1P-related 1; Swiss-Prot: sp|Q2RYF4|CCME_RHORT Cytochrome c-type biogenesis protein CcmE; TrEMBL-Plants: tr|I1LQI6|I1LQI6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0494200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:91240245..91241154) extracted from Lotus japonicus Gifu genome v1.2.

ATGGCCTCTAAACTCGCTCTCCGATTCAGATCCCATCTCCTCCGCACCACCTCACTCTTCCACCGACAACAACTATTTAA ACCCCCGCCGCCGCCGTCGCTCCTTGCTTCGCTACCGGAAGCCCTTTCAACCCGCCAATACTTCGCCCTCTCCGGCCACC GCTTTCTCTCCACAGCTCGCCGCCAGCCGCCGCGATCCAAGAAACACGTGGACATCGGCGCGCGAGCCCGGCAGCTCCAG AACCGCCGCCTCTGGACCTACGCGCTAACCTTCGGGTGCGTGGCGGGGTTCATCGTAGTCGTGCTCAACAACTTCCAGGA CCAGTTGGTGTTCTACGTTACCCCAACCGACATGCTCGAGAAGCACCGCAGCAACCCTTCCAAGGCGAAGTTCCGGTTAG GGGGTCTCGTCCTTGAGGGGAGCGTGGTGTACCCTTCTTCTTCCCCTGGTGTGGAATTCGTGGTCACCGATTTGATCACC GATATCGTGGTCCGGCATGAGGGTTCTCTGCCGGATTTGTTCAGGGAAGGGCACTCGGTGGTTGTTGAAGGGTTTGTGAA GCCTTTCACGGTGGAGATCAAGAATGAAGTGTCGGCGAAGAGCGTCGCCGCGAAGGCTAGGACTGGAGAGTGTTATTTTG CGGCTACTGAGGTTCTTGCTAAGCATGATGAGAAGTATATGCCTAAAGAGGTTGCTGCGGCGATTGAGAAGAATAAGAAG ATTATTGAGGAGGCTGCCGGTGAGTCAGTGGAGGAAACAACCGCCTCTTAGATGGACTGGTACCACCCCAACTTTGAATT TTGATTTAGCATTTTTTGGGGGATTATATTACAGTGTTATGATTATTTTTGGAGGGATTTGGAATATTTAACTATAGGCT GAGAAATTTTTGTGGTAATAATTAGGATGA
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0494200.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCCTCTAAACTCGCTCTCCGATTCAGATCCCATCTCCTCCGCACCACCTCACTCTTCCACCGACAACAACTATTTAA ACCCCCGCCCCTCTCCGGCCACCGCTTTCTCTCCACAGCTCGCCGCCAGCCGCCGCGATCCAAGAAACACGTGGACATCG GCGCGCGAGCCCGGCAGCTCCAGAACCGCCGCCTCTGGACCTACGCGCTAACCTTCGGGTGCGTGGCGGGGTTCATCGTA GTCGTGCTCAACAACTTCCAGGACCAGTTGGTGTTCTACGTTACCCCAACCGACATGCTCGAGAAGCACCGCAGCAACCC TTCCAAGGCGAAGTTCCGGTTAGGGGGTCTCGTCCTTGAGGGGAGCGTGGTGTACCCTTCTTCTTCCCCTGGTGTGGAAT TCGTGGTCACCGATTTGATCACCGATATCGTGGTCCGGCATGAGGGTTCTCTGCCGGATTTGTTCAGGGAAGGGCACTCG GTGGTTGTTGAAGGGTTTGTGAAGCCTTTCACGGTGGAGATCAAGAATGAAGTGTCGGCGAAGAGCGTCGCCGCGAAGGC TAGGACTGGAGAGTGTTATTTTGCGGCTACTGAGGTTCTTGCTAAGCATGATGAGAAGTATATGCCTAAAGAGGTTGCTG CGGCGATTGAGAAGAATAAGAAGATTATTGAGGAGGCTGCCGGTGAGTCAGTGGAGGAAACAACCGCCTCTTAG
Download CDS Sequence

Protein sequence (LotjaGi3g1v0494200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MASKLALRFRSHLLRTTSLFHRQQLFKPPPLSGHRFLSTARRQPPRSKKHVDIGARARQLQNRRLWTYALTFGCVAGFIV VVLNNFQDQLVFYVTPTDMLEKHRSNPSKAKFRLGGLVLEGSVVYPSSSPGVEFVVTDLITDIVVRHEGSLPDLFREGHS VVVEGFVKPFTVEIKNEVSAKSVAAKARTGECYFAATEVLAKHDEKYMPKEVAAAIEKNKKIIEEAAGESVEETTAS
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
CYTOPLASMIC_DOMAIN
1 64 64 - –
PANTHER
PTHR34128
31 233 203 1.8E-115
IPR004329
PANTHER
PTHR34128:SF2
31 233 203 1.8E-115 –
Hamap
MF_01959
58 220 163 25.026
IPR004329
Pfam
PF03100
61 210 150 2.1E-43
IPR004329
Phobius
TRANSMEMBRANE
65 86 22 - –
TMHMM
TMhelix
65 87 23 - –
Gene3D
G3DSA:2.40.50.140
86 184 99 6.0E-22 –
SUPERFAMILY
SSF82093
86 215 130 4.84E-28
IPR036127
Phobius
NON_CYTOPLASMIC_DOMAIN
87 237 151 - –
Gene3D
G3DSA:2.40.50.140
185 216 32 3.0E-5 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005886
Cellular component Plasma membrane The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
Subterm of
Part of
GO:0017003
Biological process Protein-heme linkage The covalent linkage of heme and a protein.
Subterm of
GO:0017004
Biological process Cytochrome complex assembly The aggregation, arrangement and bonding together of a cytochrome complex. A cytochrome complex is a protein complex in which at least one of the proteins is a cytochrome, i.e. a heme-containing protein involved in catalysis of redox reactions.
Subterm of
GO:0020037
Molecular function Heme binding Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0494200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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