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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0497500 |
| Transcript ID | LotjaGi3g1v0497500.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING/U-box superfamily protein; TAIR: AT2G31510.1 IBR domain-containing protein; Swiss-Prot: sp|Q84RR0|ARI7_ARATH Probable E3 ubiquitin-protein ligase ARI7; TrEMBL-Plants: tr|A0A0L9V731|A0A0L9V731_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0497500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:91624993..91631891) extracted from Lotus japonicus Gifu genome v1.2.
ATGGACTCCGAGGATGATATGCACGATGCCAACGACGTTGAGTCTTTCGACGACGATTTCTACAGTGGCGACGCGGAGGA AGCTCCCTTGGACTACTACAGCGACTACGATGACGACGCCGATGATTACTTCGACGATTCCGATAGGATTGAGTCTCGTT GCCCTGAGGTTTCATTTCTTTTTCCCCCTTTTCCGATTCCATCAATTTTTCATTCAATGCGGTTCGCTTTCAATGTTTAC ACGATTTCTTCCCCTTTAATTTTAGGAATTTTGATGAAAAAATAGTTTTTTTTTTCTTCTGGGTTTTGCATGAATTGGAT GTGAGTCCTGCAATTTCTACCAATTGCTATCTAATTATGGATAATTGTTTGGGTTTCAGCACAATTTTACCATCTTGAAG GAATCAGATATTCAGCTAAGGCAGGAAGAGGATATCAATAGAGTAGCAGGGGTTCTTTCCATATCAAGAGTTGCTGCAAG CATACTACTTCGTCACTACAACTGGTAAATTCATTTTTGTATCTCTGTATGACAGTGATTTTGCCATCATCTTTAGTGTT TCAACTTTTAAAACATTCTTTTTTTATGATATAACATTGGTGAATTTTGGGTTGCCATTATGAATTTTGAGTTTAAGTTT ACTATAATGACATGAATCATGAGTTATTTTCCTTATCTATGGGATTTTCTATGTGTATATTTTACTAAGTATACTTTTGC ATATGTAGTAGGATCTTATGACAGTGATTGTGCTTGCCATGTTCAGTGCTTCAACTTTTAAAGCGTTATTTCTTTTTATG CGGCATTTGTATGATATAACATTGGTGAATTTGGGGTTGCAGGAGCGTCAGTAAAGTGCATGATGCTTGGTTTGCTGATG AAGAGGGAGTTAGGAAAGCAGTTGGCTTGTTAGAGAAGCCAGTTGTAGAGTATCCTAATGCTAGAGAGGTGAGATATGGT TGGTCTGGTTCTAAGTCAATAATGTAGTTGGATTTTTATTTTCTCCAGCTGCTGGGGTTATATTTGTATTTCATTTTCTT TTGTTCTTGGTTTCTTCTGTGGCCAGCTTACATGTGGCATCTGTTTTGAAAACTATCCTCGTGCTAGGATTGAAGTGGCT TCTTGTGGTCATCCCTACTGTTTCTCATGCTGGGAAGGTGTGTTTTCTTTGCTATTACTCTATTCTTCTGTGACCTTAGT TATAATCTGGACATTGAGCTGAATTTTTGCCTTTGTTTTTAATCTTGGGTGATAGAATATGCATTTTGGTTTGTTTTTTC TGTCTTATAATCTTACTTCTGTCCTTTTCAATATGCTAGGATATATTACCACATCCATTAATGATGGTCCTGGGTGTTTG ATGCTGAGATGTCCCGATCCCACTTGTAGTGCGGCTGTTGGTCAAGATATGATTGATCTATTAGCATCCAATGAAGATAA ACAAAAGTATGCCCGTTACCTTCGTAGATCTTATATTGAAGACAATAAGAAGGTATGCACTAGATATGGAATTATGACAC TTATAATGATAGTGAAGGGAATTTTTACTTTTCTTTATACTGCAAATTGAAATCCATGTCACTATAACTATATGTGGCCC ATTATTTATTTTCATTACGTGTTCCTGATTCTTTGAATATTGAATGAATTCTTTGTTATATTGGTAAAGTGGGATAATAT ATGTGATTAAAAACCTACACTACTTTTCTGATCATTCATATTTTTTTTTTGATATATTGGTAAAGTGGGATAATATATGT GATTAAAAACCTACACTACTTTTCTGATCATTCATTTTTTTTTTTTTTGATAATGATCATTCATAATATCTTTGTCTCAC TAGTTGATTGTCATAATAACTTTTGTTTGTCTAGTCAAAGTGGTGTCCTGCTCCTGGATGTGAATATGCAGTTACTTTTG ATGCTGGTAGCGGAAATTATGATGTCTCTTGCCTCTGTTCATATGGCTTTTGTTGGAATGTAAGTTGCATATGGATTTCT TCTATTTATTATAGTGCTGGATTTTAGACTCTTCTGTTTGTTCTGCTGATTAATGTGTCTTTGGATCTGCAGTGCACCGA GGAGGCTCATCGTCCAGTGGACTGTGGCACCGTAGCAAAGTGGATTTTGAAAAACAGTGCAGAGTCCGAAAACATGAACT GGTACGGATTTCTGGAAGGATTTTGCACATACTGTTTTCTTTTAGTACTTGAAGGAATGTGGTGTTCTTAGGAATTGAGT CATCTTGTACTTAAAGTAGACACTGAAAATGGAGAGTATGGCGTGAAAAGAAGAGTTATCCAGATTTTCATTTTTGAATC AAATTACATGTTGGCTAAAGGGGTGGGACCGTGGGAGTCATTACTTCATTCGTAGGAATGGAAGATATAAAACATGGAAC ACTTATGTGCTTAGTGTTTGGACTTTGTTTATAATTTACCAGATCAATCCATAATCCATGGGGTATTAGAACTCTACATT CTCTTGGTCTCCTTTAGGATCATTGAGCTGCTTCGTTGACTTGCATTTCTCTAATCAGTCAAGGATAAATTGTGGCTTTA TTGGATTGTGGAGTTTTGAGAACCTGAGCTTACTGTTAATTTAATGACTTTCAGGATACTTGCTAACTCAAAGCCATGTC CCAAGTGCAAGCGACCGATTGAAAAAAATCAAGGATGCATGCACATGACATGCACTCCTCCATGTAAATATGAATTTTGC TGGTATGCAATTTCCTTTACCCCTGGGTCCACTCTCATAATTTTTAACATAATTAAATTTGATGCTGCAATTAGATCTTA TCTTTCGTCTTGTTTGCCCATTATCATTTGTTGAATGTTAATCATGCAAATTTTGGGCTTATTTTTCTTTCCTGGGCATG TAATTTGAACAGTTTCCGATTTTTTTTGGGGGTTGCACCTTAACACGTATTACCATGTTTTCAAACAAATTGACCTTATA TGAATTTAATACATTTTACCTATGTAGGCTATGCCTTGGTGCATGGTCAGACCATGGTGAAAGAACTGGTGGTTTTTATG CTTGCAATCGTTATGAAGTAGCTAGGCAAGAGGGAGTGGTAAGGGACATAAAAATACTGTGCTTCTGTTGATTCAGGTTT TGGGCTACAATTAGCTCACTGTTCTGTCCACATGCATTCGGATAATTATATATGCTTATGAACTAAATTTTGGTACATGT AGTATGATGATTCTGAACGAAGAAGAGATATGGCAAAGAATTCATTGGAGAGATACACACATTATTATGAGCGGTGGGCC AGCAACCAAACTGTATGCACCACTCTATACTTAATGTTCACTACTCATGTCTTAGAATTTAGGAATCTGTCTTCTTCTAC AATTTCTGAATTCTTTCTTCAATAGTTTGTATATGGACAGCTAAATGACTAGTTATAACTATATTATTATTTATTTCATT GCATGGTGTTTTCAATCATAAGCTTCAGCCCTATTTGTTCATTATTGTTAGAGATGTAAATCAAAAGAAAACCATTTAGT AATATTTCGTAACAGGTCAAGTTTTTAGTATAGTTGCTCTATCAGGAACCCTTTGACCAAGTGATGTAGAATGGGTATTC CGAGAGTGCTCTTGCTCCTTCTGGCTGAGGTGTTCTTTTGATAAAACCCTAGAGCACTGTTCTTGGCCTCTTGGGTGGGC AGTCCCTTGATAAACCTGATATACTCATTTAGATGCAGAACAGTTTGTCATCGTGGGATCGTGCGATCTCTCTTAGGGTT TGCAATCTGGATCGTGGCTGGGATCACAGAAGCGTGTGGATCATGGTCCTTTGGGGATAGGATCGTAGGATCTCAATTCA ATCTTATTCTCAGAATAGGGTTTGCGATGCGGGCTTCCAAGTTTCGGCCCAAAAGATGACCCATTTTTTACATAAGCCTT TCTCGTCTCTGCAGCGACCAGACCCTAAGTCGACCTGGACTGTTGCTTCCTTCCACCGTCGACATCCACGCACTGGCTCA TGATCCCAGCAACTGACTGCCACGTGTTGGTCTGAGCCTCGTTTCTCCGGTGCACGAGTTTTTGGTCTTCGTTCTCTGAC CTCTCTCTCTGTTTCTATGTTGTGTTCTGTTCCCTCTGTTTCTGCCTTTCTGGTTCTGTTTGGTTTGGAGAAAATGGCTT TTGGTCATGGTCTTAGTTCTGCAGTGTAGGCACTTGCATTATGAATTTTGAGTTTAAGTTTACTATAATGACATGAATCT TGAGTTATTTTCCTTATCTATGTGATTTTCGATGTGTATATTTTACATAGTATGCTTTTGCATATGTAGTAGGATCTTAT GATCCGATCTACATCCTTCACCTTGATTCTGAGTAGGATCCCGATCCTGACAACATTGATGCAAAGTTCTATCATTAATC ATCTGAAGCCTAAACTGCTTAAGGTGCCTTAAGGGTATTTGAAAAGATAGTAAAATCCTAAATTAACTAAAATTCTTGAT AAAATCTAATTAGATACATGATCTCAATAAAATTTTAATTTCCTTAAACTAGGAATTTCATCAAAGATAGAATCTCTAAA ATTAAGGAAAGGTGTCAATGTTGAATGTCCTAAATAACTTAATTATCATCAAATTTATAAATTAAAAATTATAGAAATGA TTCTATATCTATTCTGCATCACTAAGAGGCCTAGAGCTGGATTCTTGTTACTCTCATTCTTCTAAAAAACAAAGTTGAAT TTCAGCACTACATAGGTGTGTTTGTTCACTCCCTTTGATTCAAACGTAGAATGGTATTGCATTAGGGGGTGTGATAGATT AGAGATGCAATATAAAAGAACCATTTATGTATTTTCACCTAACAGCTTAGAATATGTTTGGAAGACCCCCAGTTTTACGT TTTTCCAGTTTCCAAAGCAAAATCAGTGGACTAACACAGATTTCAATAGAAGGATGTGGAAGGAAGGAATCCTTCCGTTT CATTAACTGGATGTTGAATTTCTACGCTACATAGGTGTGTTTGTTCACTCCCTATGCTTCAAACTTAAGTGTTCTTGCAT TAGGGGGTGTGATAGATGCAATATGAAAGAACCATTTATGTGTTTTCACCTAACAGCTTTGAGTATGTTTGGAAGATCCC CATTTTTACGTTTTTCCAGTTTCCAAAGCAAAATCAGCAGACTAACACAGATTTCAATAGAAGAATGTGAAAGGAAGGAA TCCTTCCATTTCATTCAACTGGCTGCGATCTTAAAACACAGTCAATTGACAATGTTGAATGCCTGAGTGATGAGTATTTT GATATATTTATTATTTTCCTTATTTTAAAAATGCCCACCCCTTGGAAGGCTGACTGGCTAAGTTTTAGTGATTTCTTTCA TGATGGACGTTGGTTAGTTGTTCTTGATTGCCGATTTTAAAATGTGTTATGTTTTACTATTATTTATCCAGGTATATGCA TTTAGGCCAGCATCTACCTAATCATCTTGAGAATCTTTTTTTAAGAATATTTCTTATGTGATTGTATTCTTTATTGATGT ACACATACTTTTTCTGGTCTTGCAGTCAAGGCAAAAAGCTCTTTCAGATCTACAGCAGATGCATACTGTTCATGTAAGCT ACACGTACACTTATCATGTACTATTTTAATGCAAAATACATATTGCAAAATACATGCTTGAAAAATATATATTGTAATTG CAATTTTTTTTTTCAAGCATGTATTTTGCAATGTTCTGGATTATCCGCTTCTAAAATAGTACAATATTTTTCCTTGTAAA TTATTAGAAAATATTAGTTTTTTGTGGTATAGTCTTTTGTATATGTTCCTAGGGATCATATAATTGCTTGCTAATCCTCA TCTCTTTTCTCTCCCCCCTGTTTTGGGACCAGATTGAGAAGCTTAGTGACACACAGTGCCAACCTGAGTCACAGCTTAAG TTCATAACTGAGGCCTGGCTGCAGGTAAATGAGTTTTTTTTAATGGTTTTGTTCAGTTTGCTTCATAATGAGTTATGAAG CTTTAACAAGTTACATTTTTGGGTAGACCAGTTCCCCTCCCCTAATGCTGCTGCTATTCATTGAACTGAAGCTGGTCATT TCATTATAGTTTTTTTTAGTGTTGGTAATCTTTATGATGGTCTTTGTTATTATAACTGTATGGAATTTCAATCACGTGGC CATCAATGTTTCACTTTTTCAGATAGTCGAGTGTAGACGAGTGCTGAAATGGACATATGCATATGGGTATTATTTACATG AAGAAGAGCGTGCCAAAAAACAGTTCTTTGAGTATTTGCAAGGTTCTATTTCTTAACTTGAGTTTAATCAGAAATGTGTT GTTGTGCTTTAGGTGGTTCCCCATAAATAATACTCGGCTTAATTTTTTTCAGGTGAAGCAGAATCTGGTCTGGAGAGGCT TCATCAATGTGCTGAAAAAGAACTACAGCCATTCCTCAGTGCTGATGATGGCCCATCTAGAGAATTCAATGACTTTCGTA CAAAGCTAGCTGGCTTGACTAGGTACACGTTGCTCCTGATTTGTTAAGCATTTTCCTTATACTCTTGTTTTTATTCTCTC TTTTTTTTGTGGTTCGAATTGGAGTTTGGTTTTAAATTGATATCCTGATATGCTTGTTTTGGCAGTGTGACTAAAAACTA CTTTGAGAATTTAGTGAGGGCATTAGAGAATGGTCTATCTGATGTGGACAGTGATGGAGCTGCGTTCAGCAAGGCAACGA GCTCAAGAAATGCGGCAGGGAGCAGCAAGGGGAAAGCCGGAAGAGGAAAGGGAACTTTTCGAACCAGCAGCATGTCCAGC AGAACGACTGATGATAGTCATTGGAGTTGCGAGGTTTGTACCTTTGCAAATGTCAAATCTTCCACTGCATGCCAGATTTG CAATCAACCGCGTTGGTGA
CDS sequence (LotjaGi3g1v0497500.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACTCCGAGGATGATATGCACGATGCCAACGACGTTGAGTCTTTCGACGACGATTTCTACAGTGGCGACGCGGAGGA AGCTCCCTTGGACTACTACAGCGACTACGATGACGACGCCGATGATTACTTCGACGATTCCGATAGGATTGAGTCTCGTT GCCCTGAGCACAATTTTACCATCTTGAAGGAATCAGATATTCAGCTAAGGCAGGAAGAGGATATCAATAGAGTAGCAGGG GTTCTTTCCATATCAAGAGTTGCTGCAAGCATACTACTTCGTCACTACAACTGGAGCGTCAGTAAAGTGCATGATGCTTG GTTTGCTGATGAAGAGGGAGTTAGGAAAGCAGTTGGCTTGTTAGAGAAGCCAGTTGTAGAGTATCCTAATGCTAGAGAGC TTACATGTGGCATCTGTTTTGAAAACTATCCTCGATATATTACCACATCCATTAATGATGGTCCTGGGTGTTTGATGCTG AGATGTCCCGATCCCACTTGTAGTGCGGCTGTTGGTCAAGATATGATTGATCTATTAGCATCCAATGAAGATAAACAAAA GTATGCCCGTTACCTTCGTAGATCTTATATTGAAGACAATAAGAAGTCAAAGTGGTGTCCTGCTCCTGGATGTGAATATG CAGTTACTTTTGATGCTGGTAGCGGAAATTATGATGTCTCTTGCCTCTGTTCATATGGCTTTTGTTGGAATTGCACCGAG GAGGCTCATCGTCCAGTGGACTGTGGCACCGTAGCAAAGTGGATTTTGAAAAACAGTGCAGAGTCCGAAAACATGAACTG GATACTTGCTAACTCAAAGCCATGTCCCAAGTGCAAGCGACCGATTGAAAAAAATCAAGGATGCATGCACATGACATGCA CTCCTCCATGTAAATATGAATTTTGCTGGCTATGCCTTGGTGCATGGTCAGACCATGGTGAAAGAACTGGTGGTTTTTAT GCTTGCAATCGTTATGAAGTAGCTAGGCAAGAGGGAGTGTATGATGATTCTGAACGAAGAAGAGATATGGCAAAGAATTC ATTGGAGAGATACACACATTATTATGAGCGGTGGGCCAGCAACCAAACTTCAAGGCAAAAAGCTCTTTCAGATCTACAGC AGATGCATACTGTTCATATTGAGAAGCTTAGTGACACACAGTGCCAACCTGAGTCACAGCTTAAGTTCATAACTGAGGCC TGGCTGCAGATAGTCGAGTGTAGACGAGTGCTGAAATGGACATATGCATATGGGTATTATTTACATGAAGAAGAGCGTGC CAAAAAACAGTTCTTTGAGTATTTGCAAGGTGAAGCAGAATCTGGTCTGGAGAGGCTTCATCAATGTGCTGAAAAAGAAC TACAGCCATTCCTCAGTGCTGATGATGGCCCATCTAGAGAATTCAATGACTTTCGTACAAAGCTAGCTGGCTTGACTAGT GTGACTAAAAACTACTTTGAGAATTTAGTGAGGGCATTAGAGAATGGTCTATCTGATGTGGACAGTGATGGAGCTGCGTT CAGCAAGGCAACGAGCTCAAGAAATGCGGCAGGGAGCAGCAAGGGGAAAGCCGGAAGAGGAAAGGGAACTTTTCGAACCA GCAGCATGTCCAGCAGAACGACTGATGATAGTCATTGGAGTTGCGAGGTTTGTACCTTTGCAAATGTCAAATCTTCCACT GCATGCCAGATTTGCAATCAACCGCGTTGGTGA
Protein sequence (LotjaGi3g1v0497500.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDSEDDMHDANDVESFDDDFYSGDAEEAPLDYYSDYDDDADDYFDDSDRIESRCPEHNFTILKESDIQLRQEEDINRVAG VLSISRVAASILLRHYNWSVSKVHDAWFADEEGVRKAVGLLEKPVVEYPNARELTCGICFENYPRYITTSINDGPGCLML RCPDPTCSAAVGQDMIDLLASNEDKQKYARYLRRSYIEDNKKSKWCPAPGCEYAVTFDAGSGNYDVSCLCSYGFCWNCTE EAHRPVDCGTVAKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKYEFCWLCLGAWSDHGERTGGFY ACNRYEVARQEGVYDDSERRRDMAKNSLERYTHYYERWASNQTSRQKALSDLQQMHTVHIEKLSDTQCQPESQLKFITEA WLQIVECRRVLKWTYAYGYYLHEEERAKKQFFEYLQGEAESGLERLHQCAEKELQPFLSADDGPSREFNDFRTKLAGLTS VTKNYFENLVRALENGLSDVDSDGAAFSKATSSRNAAGSSKGKAGRGKGTFRTSSMSSRTTDDSHWSCEVCTFANVKSST ACQICNQPRW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 487 | 487 | 1.1E-284 | – | |
| PANTHER | 1 | 487 | 487 | 1.1E-284 | ||
| MobiDBLite | 1 | 25 | 25 | - | – | |
| ProSiteProfiles | 112 | 326 | 215 | 43.686 | – | |
| SUPERFAMILY | 132 | 198 | 67 | 1.06E-8 | – | |
| Pfam | 186 | 248 | 63 | 1.5E-15 | ||
| SMART | 186 | 248 | 63 | 4.0E-23 | ||
| SUPERFAMILY | 187 | 255 | 69 | 3.18E-12 | – | |
| Gene3D | 244 | 500 | 257 | 3.7E-79 | – | |
| SMART | 252 | 322 | 71 | 0.037 | ||
| Pfam | 265 | 313 | 49 | 8.1E-10 | ||
| SUPERFAMILY | 267 | 315 | 49 | 2.05E-17 | – | |
| MobiDBLite | 511 | 543 | 33 | - | – | |
| Gene3D | 535 | 569 | 35 | 2.3E-5 | – | |
| ProSiteProfiles | 542 | 570 | 29 | 8.739 | ||
| SUPERFAMILY | 542 | 569 | 28 | 1.8E-5 | ||
| SMART | 544 | 568 | 25 | 1.5E-5 | ||
| ProSitePatterns | 546 | 565 | 20 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ubiquitin-protein transferase activity | Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages. | ||
| Biological process | Protein ubiquitination | The process in which one or more ubiquitin groups are added to a protein. |
Expression pattern of LotjaGi3g1v0497500.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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