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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR002867
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 56 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 5.294s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0097549.1
n.a. IBR domain containing protein [Medicago truncatula] gi|357472415|ref|XP_003606492.1| chr0 41257870 41261433 +
3 domain predictions
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Lj0g3v0107819.1
n.a. E3 ubiquitin-protein ligase RNF19A [Medicago truncatula] gi|357489519|ref|XP_003615047.1| chr0 46491473 46503911 -
3 domain predictions
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Lj0g3v0271549.1
n.a. Pre-mRNA splicing factor ATP-dependent RNA helicase-like protein [Medicago truncatula] gi|357463271|ref|XP_003601917.1| chr0 140673021 140679894 -
3 domain predictions
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Lj0g3v0288699.1
n.a. PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-like [Cicer arietinum] gi|502086230|ref|XP_004488151.1| chr0 149998979 149999820 +
3 domain predictions
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Lj0g3v0288719.1
n.a. PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-like [Cicer arietinum] gi|502086230|ref|XP_004488151.1| chr0 150008495 150011527 +
3 domain predictions
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Lj0g3v0308069.1
n.a. PREDICTED: probable E3 ubiquitin-protein ligase ARI3-like [Glycine max] gi|356522436|ref|XP_003529852.1| chr0 160833880 160835082 +
3 domain predictions
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Lj0g3v0321849.1
n.a. PREDICTED: probable E3 ubiquitin-protein ligase ARI7-like [Glycine max] gi|356550364|ref|XP_003543557.1| chr0 168038997 168046365 -
3 domain predictions
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Lj2g3v1496120.1
n.a. PREDICTED: E3 ubiquitin-protein ligase RNF14-like [Cicer arietinum] gi|502162680|ref|XP_004512580.1| chr2 23684110 23688347 +
3 domain predictions
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Lj2g3v1496130.1
n.a. PREDICTED: E3 ubiquitin-protein ligase RNF14-like [Cicer arietinum] gi|502162680|ref|XP_004512580.1| chr2 23690418 23695127 +
3 domain predictions
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Lj3g3v2309770.1
n.a. IBR domain containing protein [Medicago truncatula] gi|357472415|ref|XP_003606492.1| chr3 28089241 28099773 -
3 domain predictions
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Lj3g3v2575830.1
n.a. PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-like [Glycine max] gi|356522438|ref|XP_003529853.1| chr3 31368457 31369566 +
3 domain predictions
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Lj3g3v3302740.1
n.a. PREDICTED: probable E3 ubiquitin-protein ligase ARI7-like [Glycine max] gi|356538909|ref|XP_003537943.1| chr3 40321472 40329168 +
3 domain predictions
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Lj3g3v3338240.1
n.a. PREDICTED: probable E3 ubiquitin-protein ligase ARI1-like [Glycine max] gi|356545317|ref|XP_003541090.1| chr3 40860297 40864485 -
3 domain predictions
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Lj3g3v3338240.2
n.a. PREDICTED: probable E3 ubiquitin-protein ligase ARI1-like isoform 1 [Glycine max] gi|356538827|ref|XP_003537902.1| chr3 40860297 40864485 -
3 domain predictions
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Lj3g3v3338240.3
n.a. PREDICTED: probable E3 ubiquitin-protein ligase ARI1-like isoform 1 [Glycine max] gi|356538827|ref|XP_003537902.1| chr3 40860297 40864485 -
3 domain predictions
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Lj3g3v3386780.1
n.a. PREDICTED: probable E3 ubiquitin-protein ligase ARI7-like [Glycine max] gi|356544392|ref|XP_003540636.1| chr3 41880284 41882574 +
3 domain predictions
 –
Lj3g3v3386830.3
n.a. PREDICTED: probable E3 ubiquitin-protein ligase ARI7-like [Glycine max] gi|356544392|ref|XP_003540636.1| chr3 41887869 41893731 +
3 domain predictions
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Lj4g3v0343360.1
n.a. PREDICTED: probable E3 ubiquitin-protein ligase ARI1-like [Glycine max] gi|356545317|ref|XP_003541090.1| chr4 4681667 4684562 +
3 domain predictions
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Lj5g3v2060620.1
n.a. PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-like [Cicer arietinum] gi|502119893|ref|XP_004496771.1| chr5 29756424 29757501 +
3 domain predictions
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Lj5g3v2267350.1
n.a. Pre-mRNA splicing factor ATP-dependent RNA helicase-like protein [Medicago truncatula] gi|357463271|ref|XP_003601917.1| chr5 33160225 33161396 +
3 domain predictions
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Lj5g3v2267370.2
n.a. n.a. chr5 33160384 33163800 -
3 domain predictions
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Lj6g3v1149690.1
n.a. PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-like [Cicer arietinum] gi|502086230|ref|XP_004488151.1| chr6 14067025 14067673 -
3 domain predictions
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Lj6g3v1150710.1
n.a. PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-like [Cicer arietinum] gi|502086230|ref|XP_004488151.1| chr6 14075608 14078086 +
3 domain predictions
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Lj6g3v1150730.1
n.a. PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-like [Cicer arietinum] gi|502086230|ref|XP_004488151.1| chr6 14081975 14082816 +
3 domain predictions
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Lj6g3v1692560.1
n.a. E3 ubiquitin-protein ligase RNF216 [Medicago truncatula] gi|357448361|ref|XP_003594456.1| chr6 18876012 18880795 +
3 domain predictions
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LotjaGi2g1v0335000.1
n.a. E3 ubiquitin-protein ligase RNF14; TAIR: AT1G32340.1 NDR1/HIN1-like 8; Swiss-Prot: sp|Q9JI90|RNF14_MOUSE E3 ubiquitin-protein ligase RNF14; TrEMBL-Plants: tr|V7CJB6|V7CJB6_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0335000 LjG1.1_chr2 81104970 81111065 +
3 domain predictions
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LotjaGi2g1v0335100_LC.1
n.a. E3 ubiquitin-protein ligase RNF14; TAIR: AT1G32340.1 NDR1/HIN1-like 8; Swiss-Prot: sp|Q9JI90|RNF14_MOUSE E3 ubiquitin-protein ligase RNF14; TrEMBL-Plants: tr|G7KDN8|G7KDN8_MEDTR NDR1/HIN1-like protein; Found in the gene: LotjaGi2g1v0335100_LC LjG1.1_chr2 81112474 81116367 +
3 domain predictions
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LotjaGi2g1v0363600.1
n.a. RING/U-box superfamily protein; TAIR: AT5G60250.1 zinc finger (C3HC4-type RING finger) family protein; Swiss-Prot: sp|P0CE10|DEAHB_ARATH ATP-dependent RNA helicase DEAH11, chloroplastic; TrEMBL-Plants: tr|A0A1J7HFY3|A0A1J7HFY3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0363600 LjG1.1_chr2 86104191 86115357 -
3 domain predictions
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LotjaGi2g1v0363600.2
n.a. RING/U-box superfamily protein; TAIR: AT5G60250.1 zinc finger (C3HC4-type RING finger) family protein; Swiss-Prot: sp|P0CE10|DEAHB_ARATH ATP-dependent RNA helicase DEAH11, chloroplastic; TrEMBL-Plants: tr|I1LKC6|I1LKC6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0363600 LjG1.1_chr2 86111551 86115357 -
3 domain predictions
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LotjaGi3g1v0293800.1
n.a. RING/U-box superfamily protein; TAIR: AT2G31510.1 IBR domain-containing protein; Swiss-Prot: sp|Q84RR0|ARI7_ARATH Probable E3 ubiquitin-protein ligase ARI7; TrEMBL-Plants: tr|A0A0L9UNK9|A0A0L9UNK9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0293800 LjG1.1_chr3 60054804 60064527 +
3 domain predictions
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LotjaGi3g1v0293800.3
n.a. RING/U-box superfamily protein; TAIR: AT2G31510.1 IBR domain-containing protein; Swiss-Prot: sp|Q84RR0|ARI7_ARATH Probable E3 ubiquitin-protein ligase ARI7; TrEMBL-Plants: tr|A0A0L9UNK9|A0A0L9UNK9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0293800 LjG1.1_chr3 60055142 60063812 +
3 domain predictions
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LotjaGi3g1v0293800.4
n.a. RING/U-box superfamily protein; TAIR: AT1G65430.1 IBR domain-containing protein; Swiss-Prot: sp|Q8W468|ARI8_ARATH Probable E3 ubiquitin-protein ligase ARI8; TrEMBL-Plants: tr|A0A0B2RE25|A0A0B2RE25_GLYSO Putative E3 ubiquitin-protein ligase ARI7; Found in the gene: LotjaGi3g1v0293800 LjG1.1_chr3 60056516 60063812 +
3 domain predictions
 –
LotjaGi3g1v0364600.1
n.a. RING/U-box superfamily protein; TAIR: AT5G60250.1 zinc finger (C3HC4-type RING finger) family protein; Swiss-Prot: sp|P0CE10|DEAHB_ARATH ATP-dependent RNA helicase DEAH11, chloroplastic; TrEMBL-Plants: tr|I1LKC6|I1LKC6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0364600 LjG1.1_chr3 75030850 75036939 +
3 domain predictions
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LotjaGi3g1v0364600.2
n.a. RING/U-box superfamily protein; TAIR: AT5G60250.1 zinc finger (C3HC4-type RING finger) family protein; Swiss-Prot: sp|P0CE10|DEAHB_ARATH ATP-dependent RNA helicase DEAH11, chloroplastic; TrEMBL-Plants: tr|I1LKC6|I1LKC6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0364600 LjG1.1_chr3 75030850 75036964 +
3 domain predictions
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LotjaGi3g1v0364700_LC.1
n.a. RING/U-box superfamily protein; TAIR: AT5G60250.1 zinc finger (C3HC4-type RING finger) family protein; Swiss-Prot: sp|P0CE10|DEAHB_ARATH ATP-dependent RNA helicase DEAH11, chloroplastic; TrEMBL-Plants: tr|K7LTH2|K7LTH2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0364700_LC LjG1.1_chr3 75038670 75042844 +
3 domain predictions
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LotjaGi3g1v0497500.1
n.a. RING/U-box superfamily protein; TAIR: AT2G31510.1 IBR domain-containing protein; Swiss-Prot: sp|Q84RR0|ARI7_ARATH Probable E3 ubiquitin-protein ligase ARI7; TrEMBL-Plants: tr|A0A0L9V731|A0A0L9V731_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0497500 LjG1.1_chr3 91624537 91633292 +
3 domain predictions
 –
LotjaGi3g1v0497500.2
n.a. RING/U-box superfamily protein; TAIR: AT2G31510.1 IBR domain-containing protein; Swiss-Prot: sp|Q84RR0|ARI7_ARATH Probable E3 ubiquitin-protein ligase ARI7; TrEMBL-Plants: tr|A0A0L9V731|A0A0L9V731_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0497500 LjG1.1_chr3 91624817 91632430 +
3 domain predictions
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LotjaGi3g1v0497500.3
n.a. RING/U-box superfamily protein; TAIR: AT2G31510.1 IBR domain-containing protein; Swiss-Prot: sp|Q84RR0|ARI7_ARATH Probable E3 ubiquitin-protein ligase ARI7; TrEMBL-Plants: tr|A0A0L9V731|A0A0L9V731_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0497500 LjG1.1_chr3 91624993 91631891 +
3 domain predictions
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LotjaGi3g1v0505000.1
n.a. RING/U-box superfamily protein; TAIR: AT4G34370.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q949V6|ARI1_ARATH Probable E3 ubiquitin-protein ligase ARI1; TrEMBL-Plants: tr|A0A0S3SDI2|A0A0S3SDI2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0505000 LjG1.1_chr3 92269819 92274809 -
3 domain predictions
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LotjaGi3g1v0505000.2
n.a. RING/U-box superfamily protein; TAIR: AT4G34370.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q949V6|ARI1_ARATH Probable E3 ubiquitin-protein ligase ARI1; TrEMBL-Plants: tr|A0A151TG64|A0A151TG64_CAJCA Putative E3 ubiquitin-protein ligase ARI1; Found in the gene: LotjaGi3g1v0505000 LjG1.1_chr3 92269819 92274809 -
3 domain predictions
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LotjaGi3g1v0505000.3
n.a. RING/U-box superfamily protein; TAIR: AT4G34370.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q949V6|ARI1_ARATH Probable E3 ubiquitin-protein ligase ARI1; TrEMBL-Plants: tr|A0A0S3SDI2|A0A0S3SDI2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0505000 LjG1.1_chr3 92270405 92274799 -
3 domain predictions
 –
LotjaGi3g1v0505000.4
n.a. RING/U-box superfamily protein; TAIR: AT4G34370.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q949V6|ARI1_ARATH Probable E3 ubiquitin-protein ligase ARI1; TrEMBL-Plants: tr|A0A0S3SDI2|A0A0S3SDI2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0505000 LjG1.1_chr3 92270527 92274798 -
3 domain predictions
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LotjaGi3g1v0505000.5
n.a. RING/U-box superfamily protein; TAIR: AT2G16090.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q84RR2|ARI2_ARATH Probable E3 ubiquitin-protein ligase ARI2; TrEMBL-Plants: tr|A0A151TG64|A0A151TG64_CAJCA Putative E3 ubiquitin-protein ligase ARI1; Found in the gene: LotjaGi3g1v0505000 LjG1.1_chr3 92270560 92274783 -
3 domain predictions
 –
LotjaGi3g1v0505000.6
n.a. RING/U-box superfamily protein; TAIR: AT4G34370.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q949V6|ARI1_ARATH Probable E3 ubiquitin-protein ligase ARI1; TrEMBL-Plants: tr|A0A0S3SDI2|A0A0S3SDI2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0505000 LjG1.1_chr3 92271003 92274289 -
3 domain predictions
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LotjaGi3g1v0515000.1
n.a. RING/U-box superfamily protein; TAIR: AT1G65430.1 IBR domain-containing protein; Swiss-Prot: sp|Q84RR0|ARI7_ARATH Probable E3 ubiquitin-protein ligase ARI7; TrEMBL-Plants: tr|I1LPJ5|I1LPJ5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0515000 LjG1.1_chr3 93213972 93223749 +
3 domain predictions
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LotjaGi3g1v0515100.1
n.a. RING/U-box superfamily protein; TAIR: AT1G65430.1 IBR domain-containing protein; Swiss-Prot: sp|Q8W468|ARI8_ARATH Probable E3 ubiquitin-protein ligase ARI8; TrEMBL-Plants: tr|A0A0B2RE25|A0A0B2RE25_GLYSO Putative E3 ubiquitin-protein ligase ARI7; Found in the gene: LotjaGi3g1v0515100 LjG1.1_chr3 93225328 93235295 +
3 domain predictions
 –
LotjaGi5g1v0357200.1
n.a. ATP-dependent RNA helicase, putative; TAIR: AT5G10370.1 helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-like protein; Swiss-Prot: sp|F4KGU4|DEAHC_ARATH ATP-dependent RNA helicase DEAH12, chloroplastic; TrEMBL-Plants: tr|G7J375|G7J375_MEDTR Helicase, IBR and zinc finger protein; Found in the gene: LotjaGi5g1v0357200 LjG1.1_chr5 67173148 67179273 +
3 domain predictions
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LotjaGi5g1v0357200.2
n.a. ATP-dependent RNA helicase, putative; TAIR: AT5G10370.1 helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-like protein; Swiss-Prot: sp|F4KGU4|DEAHC_ARATH ATP-dependent RNA helicase DEAH12, chloroplastic; TrEMBL-Plants: tr|A0A0B2RGE0|A0A0B2RGE0_GLYSO Uncharacterized protein; Found in the gene: LotjaGi5g1v0357200 LjG1.1_chr5 67174282 67178940 +
3 domain predictions
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LotjaGi6g1v0090600.1
n.a. ATP-dependent RNA helicase, putative; TAIR: AT5G10370.1 helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-like protein; Swiss-Prot: sp|F4KGU4|DEAHC_ARATH ATP-dependent RNA helicase DEAH12, chloroplastic; TrEMBL-Plants: tr|G7J375|G7J375_MEDTR Helicase, IBR and zinc finger protein; Found in the gene: LotjaGi6g1v0090600 LjG1.1_chr6 19489593 19496819 -
3 domain predictions
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LotjaGi6g1v0131700.1
n.a. RING/U-box superfamily protein; TAIR: AT3G53690.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q9P3U4|HEL1_SCHPO E3 ubiquitin-protein ligase dbl4; TrEMBL-Plants: tr|A0A072V7L1|A0A072V7L1_MEDTR Zinc finger, C3HC4 type (RING finger) protein; Found in the gene: LotjaGi6g1v0131700 LjG1.1_chr6 37900015 37902472 -
2 domain predictions
 –