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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0498800 |
| Transcript ID | LotjaGi3g1v0498800.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | CRS1/YhbY (CRM) domain protein; TAIR: AT2G28480.1 RNA-binding CRS1 / YhbY (CRM) domain protein; Swiss-Prot: sp|Q67XL4|Y3544_ARATH Uncharacterized CRM domain-containing protein At3g25440, chloroplastic; TrEMBL-Plants: tr|A0A151TG13|A0A151TG13_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0498800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:91754148..91757663) extracted from Lotus japonicus Gifu genome v1.2.
AAAAAGTCAACCATTTTTATTGACCCGTTAGATTCGTGCCACGTGTTTCATGAAACCCGACCCGATCCAATACGGGTGGT GCACCGTGCACGCGAAGAAGAAAAAACAGTAAACACCGCACGCTCACATCACACACTGTGTAACCTGCAAGAGAAACCAT GGCTGCTTCTTCCTTGTTTCGCTGCATTCGTAGAGCTTCCTCTGTTCTCAGATTCTCGTATGCTGCATCGTTTTCCGTGT CTCCCAGGTTTTTTTTTTCTCTCTTCCTTCACACTGCAATATTATTTGTTTTTATTGAAAGTTGAAGGGTTTTTCTTGTG TTGTGTTGTGTTGTGTGTGTGTGTGTGTGCTAGTAGGTTAGTTGGGAGGACTCAAATGTCTATGTGTTCTTCATTGAGAC ATTGCTTTGAGGATCGAGGTTGTTCTTGGTGGGGTGTTAGAAATTTGAGTCATGGCACGATTAATCTTGTGATAAGTGGG GGGAAGACCAAGTTTGAGGCTGAGGAGGTTGAGTCTCCGAAGAAAGATAAGTATACGACGAAGAAGAGGCTGAAGATGCA GAGGAAGAGAGAGAAGGAGAAGAGGAAAGCTGCTAATAGGAGAGATCCTCGCCGGCTTGGTGTTAAAGGGAAGAAGAAGA AGAAGTTTGATAGTCCAGAAGAGAGGATCAAGTGTAAGATTGAAAAGGTGAGCATTGTACTAGGATGCTGACCCTTTTAC AGCATTTCTTCATTTGTTTAGCTCTACTTTGCTTATAAATGATTTGATTTCCAAGTTCTAGGCCATAGGGATGACTAGCA CAAGGTTAATTGTTTTGCTCATATATTCTTGGGTAGTGGATCGTTAGAAAAATAGTACAGAACATATTCTCCCAGTTTAA GCTTTTGAGATACTATAGTTGGTTCATGACTGCTATTAGAACCTCTATGACCAAGTGGTTTACAGTTCAATCCTTTTTAT CCCTTCATTCTAATAAAAAAAGGTTAAATTTCAACAAAAGATATGTGAGCATGTGATTTATCCACGCAATAGCCAATTAG GCCTCTGGTGACTAATTGTACCATGGCTGCACAACACATTAAGGCTAATGGGCTCTTGCGTGAAAAGACATGTTAAGAAT ACAGGCTACACATAATTTTTGCTTGGGTTGACTTTTATTTAACTATGATATATGCCTCCAAGTCCAACAAAGGATATCCC ATTAGATTGAGAAATTTTCTACTGCTCTAAAAAAATATTATCATCTAGAATCAAGAACTATAATAAAAAAGATCTTGCAA CAGATCATATTGTTTCTCAGTGTCTCTATTATGGTCAGAAATGCTTATTTTCCTAGACATTCTACCAAAATTTTAATGGA CTGACTCTCTGGTTTTAACCTCAGGCCAGAGTCAAGGAAGCCATGCTCATTGAAAGACTTAAACGATATGAAGTTCCTAA AGCTCAGGGTCCTGTTGCAAAACCAGATGGCTTGACAGGGGAGGAACGGTTTTATCTGAAGAAAATGGCTCAGAAAAGTT CTAATTATTTACAAGTTGGCAGAAGAGGATTATTTGGAGGGGTTATTCTCAATATGCATATGCATTGGAAGAAACACGAG ACTGTTAAGTGCATATGCAAGCCTTGTAAACCTGGTCAAGTACATGAGTATGCACAAGAACTTGCCAGACTGAGTGGTGG TATTCCGATTCACATTATTGGAGATGACACTATAATATTTTATCGCGGAAAGAACTATGTACAGCCTGATGTTATGTCAC CAATAGATACATTATCCAAAAAGAAGGTGCGTTTCTGTGTATTTTCTATTTATCTTACACTCAATGTTAACTGTAGTTCT GTTCATAGTTTAAAAGCATTGGTAATGAAATTCAGTTTAATACTTTAATTTTTCCTCGATATTTTAACTGCAATCTCGAT ATTTTACCGATGGAATTGCACTAATATATTTGTTTCATCCGGTCAAAACTATGTTCTAATGACAAGCATTTGCACTTCCT TATTGATTCAGAGTTCAGACTATTTAGAAGTTGTTGAATGGTCAGACCATCCGATCATCCAATCGTTAAGACGTTTAGCT AGGCTAATCTTGTGTTTAAGCTCGTAGCATTTAGCCTATAGGATAAAGTTCTTTGCGCCATGCTTTTTTGTGCAAGAGTT GTTCATGCGATAGTGATCTCCAGTCTGCATTCTGAAGCTGTATCTTACTTGAATAGGTGTTTGGATGTCAATTGATTGCA GTGTTAACAGACTTTCATCCCAATTCAAAAAAAAGTTCCATTCACTTTTTGTCTTGAAGAGCGTGCTATTGCTAATGTAT GTTTGTGCTAGTGCCAACAGATACCCAAACATAGCCTTAGCAGCTGGTTTAGTTGTTCAGTAAAAAATATAAATTTATAC ACTATGCAAAATCTATATTTTATATTTATTTATTTATTTTTGCAATTTTACATGTACCTCTTTAACTAGGAGAAAGAATT TTGCAGTTTGGTGTGGATTGACAGTTTGTATAAAGATTGTATTCCCCTATTCCTTATTCCCATTGCACTTTTCTGGTTAA GTATCATTTATTTTAGGAGGGACCAGGTTTTAGATTAATAAATGCTATGTAAGCTTGTTCTTCGTTTATCTTTGAGATTA GTGAAATAAATTTCTCTCTTTTTTTTTTCTTTTTCCTTTCAGGCACTGGAAAAATCCAAGTATGAGCAATCACTTGAGTC AGTGAGGCGCTTCATTGCTATTGCTGAGAAAGAATTAGAACTATATTACCGGCACGTTGCTCTTTATGGTGACCCAAACG ACCGTAATCCGTTGTCAATGCTGGACAGTCGAAGCAAAAATTTTGGGCAAAAAGGGAACCATGGAATTCATGATGGAAGA AAGCTTGATTTGAGTAGTGATCATTTTTCAGCTAATCTTTCGGAGACAGAAGCAGATTCCTCGGAGATGGAGCTATCAGG AACTGAAGATAATTCTGAAAATGAAGACTTGTCAATGAATGAATCAGATTCTGAAGAGGAAAGCATATCTTATTCTGATG ATGAACAAGGAAGAGAGGTATATTTTACTAAAAGGCAAGGTGAAAGTATATGTTCGACCACAGGTTCATCTTCAATGTCT GAACATAGCCACCGTTATAATAATCATCATTTATCATCCCGTTAAATTCCGACTAACTAGAAATTAGAGATTAATTGTAC ATTGTTAACAGTAAATGACCTTGAGTAAATCAAATAGTCCTTGGAGGAAATTGAAAAATAGTTTTTCTTTTCTTGTCGGT GTATATTTAGAAAATATGTAGGTTTCCACGGAAGGATAAGTGCTTCTGAAAGAAGCTTGATTGGAAGTAGTTTTTGTGAA GGCCTGAAGGGAGAAGTGACTCTAGTAATTTTGGTATCAAACATGCGAAAATTGAATTGAGTATATACCAAAACTAGAGC TCTCATTCCTAGCATTTTGGATCATTTTATCTTTTCTCAATCAATTATAGCGTTACAAGCTACTCACATAGGTTTC
CDS sequence (LotjaGi3g1v0498800.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGCTTCTTCCTTGTTTCGCTGCATTCGTAGAGCTTCCTCTGTTCTCAGATTCTCGTATGCTGCATCGTTTTCCGT GTCTCCCAGTAGGTTAGTTGGGAGGACTCAAATGTCTATGTGTTCTTCATTGAGACATTGCTTTGAGGATCGAGGTTGTT CTTGGTGGGGTGTTAGAAATTTGAGTCATGGCACGATTAATCTTGTGATAAGTGGGGGGAAGACCAAGTTTGAGGCTGAG GAGGTTGAGTCTCCGAAGAAAGATAAGTATACGACGAAGAAGAGGCTGAAGATGCAGAGGAAGAGAGAGAAGGAGAAGAG GAAAGCTGCTAATAGGAGAGATCCTCGCCGGCTTGGTGTTAAAGGGAAGAAGAAGAAGAAGTTTGATAGTCCAGAAGAGA GGATCAAGTGTAAGATTGAAAAGGCCAGAGTCAAGGAAGCCATGCTCATTGAAAGACTTAAACGATATGAAGTTCCTAAA GCTCAGGGTCCTGTTGCAAAACCAGATGGCTTGACAGGGGAGGAACGGTTTTATCTGAAGAAAATGGCTCAGAAAAGTTC TAATTATTTACAAGTTGGCAGAAGAGGATTATTTGGAGGGGTTATTCTCAATATGCATATGCATTGGAAGAAACACGAGA CTGTTAAGTGCATATGCAAGCCTTGTAAACCTGGTCAAGTACATGAGTATGCACAAGAACTTGCCAGACTGAGTGGTGGT ATTCCGATTCACATTATTGGAGATGACACTATAATATTTTATCGCGGAAAGAACTATGTACAGCCTGATGTTATGTCACC AATAGATACATTATCCAAAAAGAAGGCACTGGAAAAATCCAAGTATGAGCAATCACTTGAGTCAGTGAGGCGCTTCATTG CTATTGCTGAGAAAGAATTAGAACTATATTACCGGCACGTTGCTCTTTATGGTGACCCAAACGACCGTAATCCGTTGTCA ATGCTGGACAGTCGAAGCAAAAATTTTGGGCAAAAAGGGAACCATGGAATTCATGATGGAAGAAAGCTTGATTTGAGTAG TGATCATTTTTCAGCTAATCTTTCGGAGACAGAAGCAGATTCCTCGGAGATGGAGCTATCAGGAACTGAAGATAATTCTG AAAATGAAGACTTGTCAATGAATGAATCAGATTCTGAAGAGGAAAGCATATCTTATTCTGATGATGAACAAGGAAGAGAG GTATATTTTACTAAAAGGCAAGGTGAAAGTATATGTTCGACCACAGGTTCATCTTCAATGTCTGAACATAGCCACCGTTA TAATAATCATCATTTATCATCCCGTTAA
Protein sequence (LotjaGi3g1v0498800.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAASSLFRCIRRASSVLRFSYAASFSVSPSRLVGRTQMSMCSSLRHCFEDRGCSWWGVRNLSHGTINLVISGGKTKFEAE EVESPKKDKYTTKKRLKMQRKREKEKRKAANRRDPRRLGVKGKKKKKFDSPEERIKCKIEKARVKEAMLIERLKRYEVPK AQGPVAKPDGLTGEERFYLKKMAQKSSNYLQVGRRGLFGGVILNMHMHWKKHETVKCICKPCKPGQVHEYAQELARLSGG IPIHIIGDDTIIFYRGKNYVQPDVMSPIDTLSKKKALEKSKYEQSLESVRRFIAIAEKELELYYRHVALYGDPNDRNPLS MLDSRSKNFGQKGNHGIHDGRKLDLSSDHFSANLSETEADSSEMELSGTEDNSENEDLSMNESDSEEESISYSDDEQGRE VYFTKRQGESICSTTGSSSMSEHSHRYNNHHLSSR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 394 | 394 | 2.4E-181 | ||
| SignalP_GRAM_POSITIVE | 1 | 22 | 22 | - | – | |
| PANTHER | 1 | 394 | 394 | 2.4E-181 | – | |
| MobiDBLite | 80 | 129 | 50 | - | – | |
| MobiDBLite | 91 | 107 | 17 | - | – | |
| Coils | 93 | 113 | 21 | - | – | |
| ProSiteProfiles | 169 | 266 | 98 | 18.775 | ||
| Gene3D | 170 | 275 | 106 | 1.4E-9 | ||
| Pfam | 171 | 255 | 85 | 3.1E-18 | ||
| SMART | 171 | 255 | 85 | 1.1E-25 | ||
| SUPERFAMILY | 171 | 264 | 94 | 4.19E-23 | ||
| MobiDBLite | 315 | 435 | 121 | - | – | |
| MobiDBLite | 332 | 346 | 15 | - | – | |
| MobiDBLite | 348 | 362 | 15 | - | – | |
| MobiDBLite | 363 | 391 | 29 | - | – | |
| MobiDBLite | 407 | 423 | 17 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. |
Expression pattern of LotjaGi3g1v0498800.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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