Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0500000 |
| Transcript ID | LotjaGi3g1v0500000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein ApaG; TAIR: AT1G06110.1 SKP1/ASK-interacting protein 16; Swiss-Prot: sp|Q9LND7|SKI16_ARATH F-box protein SKIP16; TrEMBL-Plants: tr|I3SQI7|I3SQI7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0500000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:91828968..91835959) extracted from Lotus japonicus Gifu genome v1.2.
GGGCAAAATCTATTATTACCAGAGACAAACAAAATGCAATGTTTGGTTATGAACTAACTGTTCTTGTTTGTTGTCTCTTC AGCTGAGGCAACAGCACTTCTGCAGCAGAAAGAACGAGCGAAGATGATGGGGTTGGAAACGGTGGTTGATTTGGCGATTC ACGATGTTCTGAGGAGGCTCAGCCCTGAAGACATTGCCAGAGTCGCATGTGTGAGCAAGAAGTTGAGGTCTCTAGCCTTC GATGATGACTCTCTTTGGCTCACAATCTGCATCAGTGAACTCGATTTGCATCAGCCTCTTGATCATCTCGGAAACCCTCT TCCTTCCTTCAAGGTATATGTAATTTTTTGTGGAACCTCTAGTTTCATATGATGATTTCATGGAAAGTAACAATTATCTG ATGTGCCCATTTTGCTAATTGAGTCTCTGGTTTCTTCTTGGAGTTAATTGAGTTGGGTTATGTAGTAAAGGTGTCAACTT AGTTTTGTTTTGTTTGTTTTTCCTGCATCTTTCAATTTCAAGCACTATCTAGTAAAATCACTATCTGTTTGACTGGGTCC AATTATCAAACAAGCTTAAGCTGTTGCTGTGCTGAAAAGTATACTTGTGCTGTTGTGGTTCTGTCTGTTTTGTTGGGATA TGTGTGGAATGGAGTAGAGTGGAATAGGGTTGAAGTGATTTAGTCAAATGAATTACCATTACTATTGTTTGGACACTTGT TGTAGAACCGAGTAACTTTCCATTTCATTGTTTAGAAGTAAATAGAATTGTGAGAATGAGAATTATAACATCATTGGAGT GGTTCAATCCCATGATGTAAATTGGGGGCGAAAAAAAAACAGAAGAAGAAAAACAGGAGTTTTGGATAGTATTGGATGGA TTAGATTTCACCATGTTTCATTTTATCATTTTCCACCAATACAAACATGGTTTTGTTGTACTTACTAGCAATCTAGCTCT AGCATGCTTTCTTGGCAGTACTTGATACTTATGAAACTAACTTCTGATTCCAATGAGCCTGTTGATGAATCTGCTAATTT ATGGTTATCGTGTGACATCTTTTTTTAAAATGAGAATAATTATTGATGATGTGATGGATGTTCTTTTTTTGAATCAGTGA CAGACACCTTGTGTAAGCTAAAATTAAATAATGTTGTGTGTGTGTGTGTAATCTTGTTACAGATGGAACTCAGATCATCT GTGTGTTATGCAGGCAACTTATCAAGCTTGGAGAGAAGCTTTTGCTATGTATCCTTGGTCTCTTGTTAAGCGTGTAAAAC AGTGCTGGGACAAATTAAAGACCTGGCTGGTTAATAATTTTCCAGAAGCTGAGGCCACTCTTTGTAAAGGTGCATCTGAA GCTGAGATACTAGAGTTGGAGAATGTCTTAGAAGTGAAATTACCTCTTCCTACAAGGATCCTTTACCGCTTTCATAACGG GCAAGAAATTGCAAATGGAGATCTAGAATCTGATACATTTGGCAGTTCATTGGGTCTAATTGGTGGCTACTCCTTCTATA GTCATTTGGTAAATGTTTATCTATTACCTTTACGTCAGGTAATCCTAGAAACTCAGAACTTAACCCGTCACTTAGGCTTT TTAAGAAGATCCAAGTATGTTCTTGTGGCTGCTTCGTCCACACAAAATGAGAAGTTGTTTTTCCTCAACTGTATCGATGG TCAACTGTATGTCGGAACCAGGACTTTTTTTACCAGTGAAGACTTGATCCCTTGTGTACCTCATAATCTGATTAGTTTGC ACGGGTTGAATAATGAACAGCAACAAGATGCCATGCTACTATGGTTTGAAGAACATGGTCGCCGTTTACAACAGGGCTTT ATCAAACTTCATGAAGAGGGAAATAACAGAAGCATTAATCTTTTCCCAGAAGAACCCCCTCTTTGTTCAACGGCTATAAC CAATGGCGTGCAGGTAGGAGAGTGTATACTTGCCCTTATGCTTGGTCTTTTTAGCTCTGTATCTTAGAGCATGAAAAAGA GTGCTTTCATTATAATGGTTGATCATAGATGCTGTTTGTTAAATCATATTGGGATACATGGAATATATATTCTCATATCA TTGTAAACTTGGCATGTCATCACAGTTGTTATGGCAGAGCGGCCTCTGGCTGTTGTTTTTGTCAATACCATTATTAACTG CTGCAATTTTGGCCGCTATGACTGGAAATCATGGCCATTGTGGTCACTATTCTTCACATGGGCATAAACTTGTATTCACA CCCCCTGTTGTGAGTTATTGAACCCATTTTTTTCTTCTTGTTTTTGTTAGTTTTTGGGCCTGATTTACCTTCCCGGAAGT AATATTAGGTTTCTGTTTGAGAAAATCCAAACAAACTGTGATTACTTCTATTTCGATGAACACCAACAGTGACCCCTTCC ATTTCCTCTTATGGACCCTGTGCGGCTGTGCCTGCCCGGCATCTTTTCAAGCCAACTCCAGTGATTTCCTACATGCCCAC TGCTCTTCTGCTTCATGGATCACTGCATTGCTTGGTCTATGTTCTTTCTTTGTTCTCCAACTCTCTTCCAATAAAGCTTG GTCTATGTTCTCTGTACTTTTATTTCCTGTCTTCTCTCACACTTTAAGTCCATATTGTGATTTGTGAATGATGAATGATC TTTCTATCTCTGTTCGAAAAAGTCTTCAATTTTGGGAAACTTCATGTTTCTTAACATTTATATATGTACAGTATAGGTAT TTTATCCACCTCACACTGTGATCTGGGATTGATAAACTATGCATATCCTATGCCTTCCTGAGGTTTTAACAGTTTATATC ATATTGAAATTTCTAAGACATGCAGTTAAACCCTTGATTTCATTTTTATGTATTCATAGGAGAACAATTGGTTACTTTTG CCTGTTGGTGGCGCGTGGGTATTCCAATTCACTTACCTTTTTCTTGCAATTACTGGATATTTTATAAGTACTGCTTATTT CTTGTGATTTAATGTCAAATGGAAACTGATAAGTATTGCTTATTTCTTGAGGTTCGAGCTTCTGCATTGTTTGTCCCGGA GTTGTCTGATCTTCAAGATGACCTTGAAAAGTACTTATTTGCTTATTCAATCCGCATGTCCCTACATCCTGAAGGATGCA TCATCAATGGAATGTCCTTCAGCTCTTGTCAGCTACATTGGAGGCATTGGATCATCCGTGCTAATGATATTGTAGTATCT GATGTCAATGGAGAAGCTGTTATAGGAATGGTACAAGTCCCGTTTCCCCCTTTCTTTCCTTTTCTACCTTGTGCTGTCTA TTTAATAAACTTGTATTTTTCCATATTGCAGCATTAATGCTCCATATTCTCCTTTGTCTCCCACTTTCTCAACCCACTTT CATATATAGCAAAATCAAATGATCAACTGTATTTTAAAATAGGCAAGCAAATGCAATACAAGAGTAAAGCAATAAAGGAG AAAACAAGAAAGAGTTGGTATACCTATGGCTCTTTTAAAACAATTGAAATTTCAACTCAAATCCTAATTCTAATATAAAG AGTAGAAGAACAAATATGTGAGCCAAAGAGGAAGAGGATAGAGGTTTTTGGAAGGGGTTGGTACGGTGTGCAACTGTGAG GACGAGGCACCATTTGGTGAGACTGACATTGGGTTATTGGGCTTGGTTTCAGTTCAAGGGTGGTCTGAAAAATTGTCGGT TTGAGGTTTGGCAGGTGTGTTGCAGTGGTTAAGTGGAGTTCGGGGTCGTTGGTGGACTACGGGTGGCTATGTGATTTGGA GGCAGGTTTTGTGATGGAGAAGTTTCAGTACAGTGGCTATGAACTCTATGAAGTTCACGGTGTGGCTGGGTGAAATGGTG GAGCGGTGAGTCATGGCGGATAGGGTGTTAGGGAAGAGTTGGGGGTTGGGCACTGAACTGTTTTACGCGGCAGTGAGGGG GCTGAGAATGGTTGCTGGTCTCTGTGTGGATGGAGGTCGAGAGTGATTCTTCGTGATGTGGAGGTTGGAAAAATAACATT TTTCCTAATTTCCTTACCAATCAATGTTATCTAGGATTTTATGATGTAGCTTAGTTGATGCAGGTGGGTTTAGAGAATGT GAGAGGAAGGTAAACAGGGTAGACCGCTGCTACAGTATGAGAAAACAGGGTCACATGTGCTATATATATAATTTTGTAAA ATCTTCTGATTTGATTAACAATTTCATGATTACGATTTTAACTACTTGGTAAGAACTTAGTGCATGGTCTTCGGCTCTTC GCTTTGATTTTACAAATTCAGGTCCAAAATTACATGGAACAGTTATATTATTGCATTGTAACTGATCAAGGTCTATTTAC TGGATATTAGTGTAAATGTTTACCTGTATTTTGCTGTGTTAAATATTACGACCAGAAGTTTCTCTTCCAGCAGGGAATCA ATTTTAGAATTTCCAGAAAATTATATAATGATGCTCTATAATTGCCTTGCTATGAGATGATATTTCTAGCTTAAAGTCAT GTAGAGTTCTGGAGCTCTGATGTTTGGTACACATTGTTCGAGTGCATCCAAGTGATGATGCTAGCTTAGTTTACCTGGTG TTCTATAAATATAAGACATCCTGACTTATAGTTGTATGAATTATTCAAATTAATTCGTTCTATGAATCTATCTTTGCAGT TCCCACTTTTACGTCCAGGTGCTGAAGAATTTGTTTATCAGAGTTGCACATATCTTCCAACATCATCAGGTTCCGTCGAA GGCTCTTTTACATTTGTACCTGGCAGGTATGCATTTAAATTTTTTCCCCTTGTCATTATTGTTGGTGGTGATAAGTGATT TGGTTATATATGGTTAGTTACACAAAGTGGGAGAATATGTGAATTGGGGGTTGATGAGCTTTTATGACAAATATAACTGA AACTAATTTTTTGATACATGAATTTATTCTTCTTTGTGATTTGGGTTTTGTAAAGGCTGACTATATGTACAAGAGTGTTT GTATTTGTGTGTTTCTGGCCTGGGTCGGTTGTGGAGAGGGATGTTGAATATACATGGAGTTGTCCACAAAAGTTTGAGGT CTATGGTGTCTTGCAGTTTAAATGGGGCTGTGTTAAATGTTGTTTCCACAGCTATGTGGTATCAACTACTAGAGTTAGCA TTGTTTGTTTACCTGATATGAAATGGTAAGCAGTATTTCATGACTAGCTATTGGGAGTACTTCAATGACAACAACAAAAG TCACATCTCAATAAGTGAGGTCAACCATATAGATCACCCGACGCCATAGCGCTCGATCTAAGACCAAATTTTGTGGGATG TTATTGATCTAAGATCACTTTTAACAATATCTTCCGATGTCCTTTTTAGCCTCCATCTATCCCTCTTCATAGGACTAAAA ACCATATTATCAACCCTTCTCACCAATGCCTCCTAAGGTCTTCTTTGTACATGTCCGTACCACCTTAACTTGATTTTCTT GTCATATCTCTAGTCAATGTGAGACTTCTCAACACACTCCCTCATGCCTAAGACAAGACATGTGAAGTGTGGGATATAAA CAGGAATGAACATCTGCAGATGACTCATAGTATGTGGTCTCCACTTAACAAATCTAGGATAAACTCTGATACCATATTAA AATTTGGGAGGCCTAACTCAGCCCAAAAGCTAGCTCAAGAGTTGACTTCTCAAGACGTGTTATTTCTAGTGTGGTCACTC ATCCATCTTAACTTTCTCATATTTGCTACTCTAACTTTTTCCTTTCTTATTTTGGTGAGCTGTTAGCTTCGTGGGTAAAT GCTTGTATCTTTGGGATATGCCCTCCGGAACTACAGCTATCATTCTATCCTTTGTTTATCCATGGATGATGTGGGGGTAT CCACCTTCCAAGCATCTAAACTCATGCATCTAACAGCTGTCAAGTAATTAAGTTCAATGCCTATCCAAAAAAAAAAGTAA ATAATTTCAATTGTTATGGTCAATAAGCTAATGTTTATTGTCTTTCTTTTTTGTGTGATTTCAGATTGGCAAACCCAAAA GGAGACTCTTTCCTAGCCACAGTGGACCGCTTCCCTATTCAGCTTCCAGACTATATTTTCTGATTTTGATTTTTAGTAGG GTTAGGATTAAAGTGTTCTAATGGCAATACTGCTCTGTGATTTGCCAGTATGCAATGCATTATGTTTCTTTCGTGTGATT TTCTTGGTTGTTGTGAGAGTTTATGTTGGTCTTGCACAATTTTTCTCTATATTTTATCTATCTAGTTATGATACATTCAC ACCAAAGTTTCTCTTACATTTCAATTCCACTAATTTTTTTCTTCTTATTTCTCTTTCTTTTCATCTCATATCACCTATCA TATTACTCATTTCTCTCTTATCTTTTTATCTCACCCTAGATGTGAGTGGAATTTAACACATCATCTTATTTGTAAACTGC GACTCTCAAGGACAGTTTCACTCATGTTGCAGCAGTGCTTCCGTTCTCACATGTTTGAGTAGGTTGAGACTTAGGACGAG AGAGGGAGGAACAATGGGAGAGAAAGGGAGCGCCTGAGTTGGAACGTTGAAGCCCGATGTGTGGTGGGTGACCCATGCTG TGGTGGTTAGCAGTGGTCGTCAGTGGGCTTGAAACAACTTAAAATCCTAACCTGTAGTTCATAATATATTTTTTCATTGT CTAATATAGGAATCCAATGTGGGTGTATCGTTTCTTGTCTTCTGTTGCTGCATATATTATTGTTATTTAAAGCATCTTTT ATTTGTACTGATATTAACCTTCTCAAGTTTTAAAAATTTTGGCACATCATTTCGTAGAATATTTACCACTGAACTTTGGT TGTACTTCTTTAACCACCAAGTTGATGTGGTTGCGTATTATTTTTTATAAAGGAGGACGGAACCTCCAAAATTTTATTAA GAGCCCTCACTTATGGCGGAGGAATACCATTGTGATAGGATTACACATAAAGAAACATAACAAAAAAGCAAAAACTAGGA GCAAAATCAACCAAAAACAAGTAAGTTTCTCC
CDS sequence (LotjaGi3g1v0500000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGGGGTTGGAAACGGTGGTTGATTTGGCGATTCACGATGTTCTGAGGAGGCTCAGCCCTGAAGACATTGCCAGAGT CGCATGTGTGAGCAAGAAGTTGAGGTCTCTAGCCTTCGATGATGACTCTCTTTGGCTCACAATCTGCATCAGTGAACTCG ATTTGCATCAGCCTCTTGATCATCTCGGAAACCCTCTTCCTTCCTTCAAGGCAACTTATCAAGCTTGGAGAGAAGCTTTT GCTATGTATCCTTGGTCTCTTGTTAAGCGTGTAAAACAGTGCTGGGACAAATTAAAGACCTGGCTGGTTAATAATTTTCC AGAAGCTGAGGCCACTCTTTGTAAAGGTGCATCTGAAGCTGAGATACTAGAGTTGGAGAATGTCTTAGAAGTGAAATTAC CTCTTCCTACAAGGATCCTTTACCGCTTTCATAACGGGCAAGAAATTGCAAATGGAGATCTAGAATCTGATACATTTGGC AGTTCATTGGGTCTAATTGGTGGCTACTCCTTCTATAGTCATTTGGTAAATGTTTATCTATTACCTTTACGTCAGGTAAT CCTAGAAACTCAGAACTTAACCCGTCACTTAGGCTTTTTAAGAAGATCCAAGTATGTTCTTGTGGCTGCTTCGTCCACAC AAAATGAGAAGTTGTTTTTCCTCAACTGTATCGATGGTCAACTGTATGTCGGAACCAGGACTTTTTTTACCAGTGAAGAC TTGATCCCTTGTGTACCTCATAATCTGATTAGTTTGCACGGGTTGAATAATGAACAGCAACAAGATGCCATGCTACTATG GTTTGAAGAACATGGTCGCCGTTTACAACAGGGCTTTATCAAACTTCATGAAGAGGGAAATAACAGAAGCATTAATCTTT TCCCAGAAGAACCCCCTCTTTGTTCAACGGCTATAACCAATGGCGTGCAGGTTCGAGCTTCTGCATTGTTTGTCCCGGAG TTGTCTGATCTTCAAGATGACCTTGAAAAGTACTTATTTGCTTATTCAATCCGCATGTCCCTACATCCTGAAGGATGCAT CATCAATGGAATGTCCTTCAGCTCTTGTCAGCTACATTGGAGGCATTGGATCATCCGTGCTAATGATATTGTAGTATCTG ATGTCAATGGAGAAGCTGTTATAGGAATGTTCCCACTTTTACGTCCAGGTGCTGAAGAATTTGTTTATCAGAGTTGCACA TATCTTCCAACATCATCAGGTTCCGTCGAAGGCTCTTTTACATTTGTACCTGGCAGATTGGCAAACCCAAAAGGAGACTC TTTCCTAGCCACAGTGGACCGCTTCCCTATTCAGCTTCCAGACTATATTTTCTGA
Protein sequence (LotjaGi3g1v0500000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMGLETVVDLAIHDVLRRLSPEDIARVACVSKKLRSLAFDDDSLWLTICISELDLHQPLDHLGNPLPSFKATYQAWREAF AMYPWSLVKRVKQCWDKLKTWLVNNFPEAEATLCKGASEAEILELENVLEVKLPLPTRILYRFHNGQEIANGDLESDTFG SSLGLIGGYSFYSHLVNVYLLPLRQVILETQNLTRHLGFLRRSKYVLVAASSTQNEKLFFLNCIDGQLYVGTRTFFTSED LIPCVPHNLISLHGLNNEQQQDAMLLWFEEHGRRLQQGFIKLHEEGNNRSINLFPEEPPLCSTAITNGVQVRASALFVPE LSDLQDDLEKYLFAYSIRMSLHPEGCIINGMSFSSCQLHWRHWIIRANDIVVSDVNGEAVIGMFPLLRPGAEEFVYQSCT YLPTSSGSVEGSFTFVPGRLANPKGDSFLATVDRFPIQLPDYIF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 48 | 48 | 9.471 | ||
| PANTHER | 2 | 444 | 443 | 3.2E-219 | – | |
| Gene3D | 7 | 97 | 91 | 9.1E-7 | – | |
| SUPERFAMILY | 12 | 80 | 69 | 4.58E-11 | ||
| Pfam | 14 | 50 | 37 | 9.1E-7 | ||
| SUPERFAMILY | 94 | 198 | 105 | 4.05E-7 | – | |
| Gene3D | 301 | 443 | 143 | 2.0E-37 | ||
| ProSiteProfiles | 303 | 444 | 142 | 26.079 | ||
| SUPERFAMILY | 305 | 444 | 140 | 5.23E-28 | ||
| Pfam | 326 | 416 | 91 | 4.8E-25 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0500000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…