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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0500700 |
| Transcript ID | LotjaGi3g1v0500700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc finger family protein; TAIR: AT4G12240.1 zinc finger (C2H2 type) family protein; Swiss-Prot: sp|Q9HBE1|PATZ1_HUMAN POZ-, AT hook-, and zinc finger-containing protein 1; TrEMBL-Plants: tr|A0A0L9T4Z6|A0A0L9T4Z6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0500700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:91889196..91891741) extracted from Lotus japonicus Gifu genome v1.2.
TTGCTGCCTAGCCACACTGCTAGGAAGACTTTCGACACAAGGAGCCGTTACCATGGTCCCACGAACCATCGACTCACACT TGTGGGACTCCAACTCCGCACTTGAATTCTCAACAATTTTGAGTATATCTATGACCCTGTTTGGAATAGCTTATTTGAGC TTATCTGATAGCATAAACTCTTATGTCAGTGTTTGGGAGAGCTTATGCAAACAGCTTATGGTCTACCATAAGGTGTTTTG AGCTTATTTTCATAAGCTATTAAGGATAGCATATGAAAAAAGAGTTTATGCTTATATATAGTTTATTTTCAATTTATTTC AATAAATAGCTTATGAATAAGCACTTATGTCAAAATTAAGTTGTGTTTCTTTTTTTTTTTTTGGTCAAAATTAAATTGTG TTTTCAAACGGGGCCAGATCTGTTTAGAATAGCTTATGAAAAGAGGTTTATGCCAAATTATAACGTATTTTCAACTCTTT TTTGTATTTTCAACATATTTAAATAAATTTGTTAAAATAATTTATAAATAAATATTAATTCATAATGGGCTCAGCCCAAA AAGGGTTACACATGTGGCCGCTTATTAATGAAATCATTTTCTTTTGACCAAAAAAAAAAAGAAACTGGGGCTCACCAAAA ATTGGAAAACAGCGATGACGACGAGGGTGGAGTTTTGCAGCGGCAGTACGCGGCCTTCGCAGAGACTGCAGAGTAGTTCA GGTGCCATTACTTTTTCAATTGAAATTGAAATTATTCGTCCTAAAATTGCATCTTGCATTGGTTTGCCCTTTTGGGTTAT AATTTGTTTAATTCAGCACTGCACTAAACTAGCTGAATTATTCACTTCACTTTATTGGATTCCTTGGTTCCCTTGGAGGT CATTTGATTTGTAGAATAGAGAGTCCATTTCCTATGATTTCAATCTCAAAATTTCGTTGCATCTTCCACACACTAGAAGC CACAAGAAAACAAGTATATGTTGCATTGAGAAGTTGTCATTCTAGGTCTGAATGGGTTCAGAGGGGTTTGGATAACTTGG CACCAAATGAGAAGCCAAAGAGGGTTGGGCTTTTCTGGGACTTGGACAATAAACCCCCCAACAAAATCCCACCTTATGAA GTTGCCAATAAGCTCAGAATAGCTGCATCTTCCTTCGGGGTTGTTCGCCATATGGTGGCTTATGCAAACAGTCACACTTT TAGCCATGTCCCTCAGCCAGTCAGGGAGAGGAGGAAGGAGAGGGCGCTGTTGAATCGGTTAGAGAATAAGGGTGTTATCA AGCGAAACGAGCCGTATCTTTGTCGGGTTTGCGGGAGAAAATTCTATACTAATGAAAGGCTTGTTAACCATTTCAAGCAA CTGCATGAGAGTGAGCACAGGAAAAGGATGAACCAGATTGAGTCAGCCAAGGGGAACAGGAGGGTCAAGTTGGTGGCTAA GTATTCTATGAAAATGGAAAAGTATAAGAAGGCTGCAAGGGCTGTTTTGACTCCGAAAGTGGGGTATGGTTTGGCAGACG AGCTGAAACGGGCGGGGTTTTGGGTACAAACTGTGTTGGATAAACCAGAAGCTGCTGATCTTGCGTTGCAAAGTCACATG GTAGATATGATGGATCATCGGCGAGTTGAGTGTGTGGTTCTTGTATCTGATGATTCTGATTTTGTCGATGTAATAGAAGA AGCAAAGCTTAGATGTCTCAAAACGGTTGTCATTGGGGATACTCCTGATGGAGTCCTGAAGAGGACTGCCGATGCTGCAT TTTCTTGGGAGGAAATTCTGATGGGGAAGGCTAAAAAGGAGGCTGTGTCAGTTGTTGAAAACTGGAAAGATCGTGATATC TTAAAAAGGTTAGAGTGGACATATAATCCTGAAGTGGATAAAAAGAAATTCAATCTGAATGATACGGTTGCTGAAACATC TGAAGATGATGATATCATAGATATCGGTGATGAAGTTGATGATGACCATGAGGATGATAGAGGTTCTTGGTGGGAATTAG ATTCTGACGATGATGTCTCAACTGGACAGTTAGACAAATTATCTACCATGTCTGTGAGAAGGTGAAGCTCATTTGTCCTT CTACTTCCCAAAATTTCCCTGTGCAAAAATAATGTTTGGGTCATCAATTTGTGAGATGACATTGTAACTTAGAAGTTGAG GATGGATGTGGTAGTTACTTTGAAAATGAAATTCTTGTTTCCTCTGTTTTCCATTCTTAAGCCTACTGCTTTGTTTATTT CATTTTGCTTAGTTATCTGCTGTGATATTCCATTCAACCCTAGATACTTATTCTTAAAATCACTAAGCAGATATTTGTAG GTATATGGTTGTGAAATAATAGTGTAGCAGCTGAGAGTTGGCTCTCCTGAGTATGATCATAATCATATTGGATTGTTAAT GAACTCAACCAATTCACGTTTGAGTCATTGTTACAAAATCTTGCTTCTCGGTTGATATGTTGGGATGTGTGTTTTCCCCG TTTGCGCAATGCAAACAGAAAACCAAATGGGCACCAAGATTAACTGTAGGTAAAGTAATCTCAACT
CDS sequence (LotjaGi3g1v0500700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTTCAATCTCAAAATTTCGTTGCATCTTCCACACACTAGAAGCCACAAGAAAACAAGTATATGTTGCATTGAGAAG TTGTCATTCTAGGTCTGAATGGGTTCAGAGGGGTTTGGATAACTTGGCACCAAATGAGAAGCCAAAGAGGGTTGGGCTTT TCTGGGACTTGGACAATAAACCCCCCAACAAAATCCCACCTTATGAAGTTGCCAATAAGCTCAGAATAGCTGCATCTTCC TTCGGGGTTGTTCGCCATATGGTGGCTTATGCAAACAGTCACACTTTTAGCCATGTCCCTCAGCCAGTCAGGGAGAGGAG GAAGGAGAGGGCGCTGTTGAATCGGTTAGAGAATAAGGGTGTTATCAAGCGAAACGAGCCGTATCTTTGTCGGGTTTGCG GGAGAAAATTCTATACTAATGAAAGGCTTGTTAACCATTTCAAGCAACTGCATGAGAGTGAGCACAGGAAAAGGATGAAC CAGATTGAGTCAGCCAAGGGGAACAGGAGGGTCAAGTTGGTGGCTAAGTATTCTATGAAAATGGAAAAGTATAAGAAGGC TGCAAGGGCTGTTTTGACTCCGAAAGTGGGGTATGGTTTGGCAGACGAGCTGAAACGGGCGGGGTTTTGGGTACAAACTG TGTTGGATAAACCAGAAGCTGCTGATCTTGCGTTGCAAAGTCACATGGTAGATATGATGGATCATCGGCGAGTTGAGTGT GTGGTTCTTGTATCTGATGATTCTGATTTTGTCGATGTAATAGAAGAAGCAAAGCTTAGATGTCTCAAAACGGTTGTCAT TGGGGATACTCCTGATGGAGTCCTGAAGAGGACTGCCGATGCTGCATTTTCTTGGGAGGAAATTCTGATGGGGAAGGCTA AAAAGGAGGCTGTGTCAGTTGTTGAAAACTGGAAAGATCGTGATATCTTAAAAAGGTTAGAGTGGACATATAATCCTGAA GTGGATAAAAAGAAATTCAATCTGAATGATACGGTTGCTGAAACATCTGAAGATGATGATATCATAGATATCGGTGATGA AGTTGATGATGACCATGAGGATGATAGAGGTTCTTGGTGGGAATTAGATTCTGACGATGATGTCTCAACTGGACAGTTAG ACAAATTATCTACCATGTCTGTGAGAAGGTGA
Protein sequence (LotjaGi3g1v0500700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MISISKFRCIFHTLEATRKQVYVALRSCHSRSEWVQRGLDNLAPNEKPKRVGLFWDLDNKPPNKIPPYEVANKLRIAASS FGVVRHMVAYANSHTFSHVPQPVRERRKERALLNRLENKGVIKRNEPYLCRVCGRKFYTNERLVNHFKQLHESEHRKRMN QIESAKGNRRVKLVAKYSMKMEKYKKAARAVLTPKVGYGLADELKRAGFWVQTVLDKPEAADLALQSHMVDMMDHRRVEC VVLVSDDSDFVDVIEEAKLRCLKTVVIGDTPDGVLKRTADAAFSWEEILMGKAKKEAVSVVENWKDRDILKRLEWTYNPE VDKKKFNLNDTVAETSEDDDIIDIGDEVDDDHEDDRGSWWELDSDDDVSTGQLDKLSTMSVRR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 38 | 370 | 333 | 2.4E-166 | – | |
| PANTHER | 38 | 370 | 333 | 2.4E-166 | – | |
| SUPERFAMILY | 127 | 153 | 27 | 6.16E-5 | ||
| ProSiteProfiles | 128 | 156 | 29 | 11.739 | ||
| ProSitePatterns | 130 | 151 | 22 | - | ||
| CDD | 138 | 269 | 132 | 4.67506E-59 | – | |
| Gene3D | 141 | 290 | 150 | 4.9E-6 | – | |
| Pfam | 199 | 280 | 82 | 3.4E-8 | ||
| MobiDBLite | 339 | 383 | 45 | - | – | |
| MobiDBLite | 339 | 354 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi3g1v0500700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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