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LotjaGi3g1v0501600.2

Overview

Field Value
Gene ID LotjaGi3g1v0501600
Transcript ID LotjaGi3g1v0501600.2
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Chitinase; TAIR: AT3G54420.1 homolog of carrot EP3-3 chitinase; Swiss-Prot: sp|P27054|CHI4_PHAVU Endochitinase PR4; TrEMBL-Plants: tr|I3SA35|I3SA35_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0501600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:92003563..92004486) extracted from Lotus japonicus Gifu genome v1.2.

ATGCTCCACGATTTGCGGTAGCCTTTGTCATGATGATGATGATGGTTCCCAAATTTGTGAGAGCCCAAAGTTCAGTAGCT GACATAGTCACACCAGAGTTCTTCAATGGCATAATTGATCAGGCTGATGCTAGTTGTGCAGGGAAGAATTTCTACTCACG AGATGCTTTCCTCAATGCTCTCAATTCCTACAACCAATTCGGTAGCCTTGACTCTTTGGATGATTCTAAGCGTGAGATTG CAGCTGCTTTTGCCCACTTCACCCATGAAACAGGACGTTAGTATTCCTTCTATTTCTCTTCTAAATATATACTAACACTT GAACTATATCTTCTCGAGTGACATAACCCCTGCAGAGAAATCTTGGTCATACAAAATATTTTTCTTAACATCTTTTACAC GCACAAATATTTACCCAATAGTCATGAATTTGTAAACTACCATGATTTTTTTTTTGGGCTTATACTATGATTAATGAATG ATTAATTGATACAATACACATTGCCACATGGATGCAGATTTTTGCTACATAGAAGAGATTGATGGCGCATCAAAGGACTA TTGTGACGAAACCAACACTGAATACCCTTGTGCACCTAACAAAGGCTATTATGGGCGTGGACCAATCCAACTATCATGGA ACTTCAATTATGGACCAGCAGGGAAGAGCAACGATTTCGATGGATTGAATGCTCCAGAGACAGTGGCCAATGACCCTGTT GTGTCCTTCAAGACAGCACTGTGGTACTGGATGCAATTTGTGCGCCCTGTCTTGAGCCAAGGGTTTGGTGCAACCATTAG AGCTATCAATGGCCAACTTGAATGTGATGGTGCGAACTCCAACACAGTTCAAGCTCGAGTTAATTACTATACCCAATATT GTTCACAACTCGGTGTTGCTCCTGGGGATAATCTTACTTGCTAA
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0501600.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGATGATGATGATGGTTCCCAAATTTGTGAGAGCCCAAAGTTCAGTAGCTGACATAGTCACACCAGAGTTCTTCAATGG CATAATTGATCAGGCTGATGCTAGTTGTGCAGGGAAGAATTTCTACTCACGAGATGCTTTCCTCAATGCTCTCAATTCCT ACAACCAATTCGATTTTTGCTACATAGAAGAGATTGATGGCGCATCAAAGGACTATTGTGACGAAACCAACACTGAATAC CCTTGTGCACCTAACAAAGGCTATTATGGGCGTGGACCAATCCAACTATCATGGAACTTCAATTATGGACCAGCAGGGAA GAGCAACGATTTCGATGGATTGAATGCTCCAGAGACAGTGGCCAATGACCCTGTTGTGTCCTTCAAGACAGCACTGTGGT ACTGGATGCAATTTGTGCGCCCTGTCTTGAGCCAAGGGTTTGGTGCAACCATTAGAGCTATCAATGGCCAACTTGAATGT GATGGTGCGAACTCCAACACAGTTCAAGCTCGAGTTAATTACTATACCCAATATTGTTCACAACTCGGTGTTGCTCCTGG GGATAATCTTACTTGCTAA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0501600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MMMMMVPKFVRAQSSVADIVTPEFFNGIIDQADASCAGKNFYSRDAFLNALNSYNQFDFCYIEEIDGASKDYCDETNTEY PCAPNKGYYGRGPIQLSWNFNYGPAGKSNDFDGLNAPETVANDPVVSFKTALWYWMQFVRPVLSQGFGATIRAINGQLEC DGANSNTVQARVNYYTQYCSQLGVAPGDNLTC
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SignalP_GRAM_POSITIVE
SignalP-TM
1 12 12 - –
PIRSF
PIRSF001060
3 59 57 4.7E-12
IPR016283
PANTHER
PTHR22595:SF134
8 57 50 1.9E-99 –
PANTHER
PTHR22595
8 57 50 1.9E-99 –
SUPERFAMILY
SSF53955
15 192 178 3.94E-62
IPR023346
Gene3D
G3DSA:1.10.530.10
15 67 53 1.6E-9 –
CDD
cd00325
20 192 173 2.86017E-66 –
PIRSF
PIRSF001060
58 192 135 2.7E-58
IPR016283
Pfam
PF00182
58 137 80 3.6E-27
IPR000726
PANTHER
PTHR22595
58 192 135 1.9E-99 –
PANTHER
PTHR22595:SF134
58 192 135 1.9E-99 –
Gene3D
G3DSA:3.30.20.10
68 117 50 9.3E-27 –
Gene3D
G3DSA:1.10.530.10
118 192 75 4.6E-25 –
ProSitePatterns
PS00774
126 136 11 -
IPR000726
Pfam
PF00182
145 192 48 4.1E-10
IPR000726

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004568
Molecular function Chitinase activity Catalysis of the hydrolysis of (1->4)-beta linkages of N-acetyl-D-glucosamine (GlcNAc) polymers of chitin and chitodextrins.
Subterm of
GO:0005975
Biological process Carbohydrate metabolic process The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
Subterm of
GO:0006032
Biological process Chitin catabolic process The chemical reactions and pathways resulting in the breakdown of chitin, a linear polysaccharide consisting of beta-(1->4)-linked N-acetyl-D-glucosamine residues.
Subterm of
GO:0016998
Biological process Cell wall macromolecule catabolic process The chemical reactions and pathways resulting in the breakdown of macromolecules that form part of a cell wall.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0501600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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