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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0503900 |
| Transcript ID | LotjaGi3g1v0503900.3 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | CASP-like protein; TAIR: AT3G50810.1 Uncharacterized protein family (UPF0497); Swiss-Prot: sp|Q10EJ2|CSPLU_ORYSJ CASP-like protein 5C1; TrEMBL-Plants: tr|I1LJI7|I1LJI7_SOYBN CASP-like protein; Found in the gene: LotjaGi3g1v0503900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:92212467..92215395) extracted from Lotus japonicus Gifu genome v1.2.
CTTCTAGTCATTCAATTCCTGAATTCATTTTAGACAGATGCTATCATGTCCTGTCCCTAGCATGAATAACGACCGTTCAA ATCCATACAAGAAATATATAAAAAAACAAACGAACGAAGAAATAAATAAGAAACAAAAAGAGGATCAAATCTAGCAAAAG AACCGATATTTTATCATACTTTTTGAGCTTTGAATATATCTCATCTCAAAATATTTTAATCTTCTCTGCATACCAAAAGG CCTATTTGCACCTTGAGTAGAGAAGGCAAAAACGTTTCTGCTATTAACAGAAAAAATTTAGAGGACTTCACCCTATACTA TTTATGCCTAGAAAGTTTATCTATTTAGCGGCGTGATTACTTGCCACCGAAAACTAAGTAGCCCCATGTGTCAACTCCAT CTTCAAAACTAAAACAACTACGCCATTGCTCAATCATTCAGACCACAAAAGCCTTTGTACTATCTCCAAATTCCACCTAA CAATAATTTTCTGGAAACCTATCATGAAGCTTCTGTTTGATAGAGAAATGCCTTCATTGTCATAAAGTGCAACCAAGCAA GCTCCTTACATAGAGGAATTTTCTTCTTCTATTCATTAGCTTAGCTTGTTTGACACTTGGCACCAGGGGAAAAAGGGTAA GGAATTTAGCATGAATCTTGGGACTTGATATCATATATATAGATCATGTTTTTAAACTTTTACATGAAAAGATTCAGGCT TGAAAGAGAATTATGATAGCAGCATATCACAAGGGAAGAGCAAAATCCAAAAGTAGAATTGGTATAGTACCCTGTAAACC CCATACAACAATTTCATGGATGAATTTCCTGGCTCAGTAGGCACCAGCGCCAGCTTGAGCCTGAGATTAGGCCAGACCAT ATGCTCATCTGCCTCACTTCTTTTCATGTCTTTGGGAGTTGAATTCTACAGCTACACATCCTTCTGGTATTTTCTTTTTC CTCATCTTCCCCTTTGTAATTCTAATCTTATGAAATTAACATGTGTTGGTTTGGTTTTTCTGGCTTGATCTTCTAAGATT ACTTCTCCATAAGATTCTGCTATGTCTCTAATGCACTTTTTTTAATATATAAGCTACTCATAAATCATCTAACCTGTAGT TCATTCAGCTGATCATACGTCTTATTCTATAGCATAGTAAAAAGAATATTTAATTTTACGCCGGAGATGATAGAAGCTGA TCAAACATCAATTTAAGTGAATTTGTTGATTCTTCTGTTAATTAACTGATTGATTTTTGTGCTCATTATCCATGTCAAGC TTTCTGGTAACAATTATGGGTTTGGTAATACCTTGGAGTTTCACGTTAGCAGTGGTTGATGGGTACTCAACTCTGGTAAA ATGCCCCGTTCGTCAACCAGGAATACTGTTGATTATCATTGTGGGAGACTGGGTATGTAATTTCTCTGCACGGTGCTATT ATTTGACTTGTAGCATGTTTGGATCAGTTTTTTTTCCTCAGAATCAATTTTGGAATCTGGAAGCTATACACAGTTCCCTC AGAATCAATTTTGGAATCTAAAAGCTACTCACACAAATTTCTTTCTAGAATTGGTTAAGGATTTCCAAACATGCACAATA CTGGCAACCATGTATTAGTAACTCTTAAGTTTATTTGTTACACAGGTGTTATCAACCCTAACATTAGCAGCAGCTTCCTC AACAGCAAGTGTGGTAGATCTCCTGCTGAACTCCGACGGGTCTTTTTGTCCTATAAAGTTTTGCTGCAGGTACAGGATAT CTGCAGTTATGGCCTTCCTGACATGGTCTCTATCTTTGGCATCCTCTCTTTTTAACCTTTGGCTATTACCCTCTTTGTGA TTCTCATTTGATTCCCCTGTGAAAATATTAGATTAACCATTGTTTATTTGTAATTTTCTTTTCGATTTAGCATGATATAC CATAGGGAACATTTTTTGTGAATGATGTATGATTACAGAACTCATAACATGTAAATGAGAAAGTTTAGAGTACAGAGATG CTCAATGTTATACTGCACACAAGAGCACAAGGATGTCAACTTAAGAAGACACTTCTATGTCCAATACTTATACTGTGGTC CATGGACAATAGAATTAGAAGAGGGGGTGGGAAGAGAGTCTCTTCAAGCGACAGTTACTCAAGGAGTCTAGTGAATATCA TTGTTGTGTTTCATGAAGAAGATCACTGTCTGCAGTTCTGCAGTTTGCTAATCTTTTCACCTTGGAAGGTTTAGGCTCCA ATCATGTCTTTCACCATTACCTACTGGCTCCTGACACCAAGTCAACAAGTGGTCAATTTGCAGGGAAGTCACATGTATAT ACGAAATCAACAACAAATCAAGCAGTATTACATTTTGATCACTAAACCGGCCTCAGATGTAAAAGGGACTTCCTTTCTTT TTTGCGATTGAAAAAAGCACCATAGAACCCTCCCAGATGGAATATATCATTTGGAAATGTATTCCTTTCATTAGTATTCA TAAATCAACTTTGTTTGCCTAAACTAGTTGGTAGGTGTTGTAAAAGAAGATGATTAACAGCGCAAACACGCTCAACTGAT GATGATGCTACATCATGATTGCATGCATCAATAAAAGAATCTATAACACCTATTTTCTAATTAAAGAATGAATGATCATC CAATAAACCTCCAACTTTCCACACATATTCAGATATAAAATTCCCATGCAGCAGAACCATCAGCACAAGACAGCAAAATA TCTGTCATGACCTAGAATCCTAAGTCGCAATCAGCGCACAAACTACTGACAAGCTTGTTTCACATAAAAATATTTTCCAA ACAATTTTCTCATAATTTTATAAAAATTCGACAGCCTCCTATATTTTCAACCAAAATTACAGAACCTGTCAAAGGAGATT CACTACAACCAGAATTTCAAGAAAATATAAATTCTAAAGTCTAAACTCT
CDS sequence (LotjaGi3g1v0503900.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGAATTTCCTGGCTCAGTAGGCACCAGCGCCAGCTTGAGCCTGAGATTAGGCCAGACCATATGCTCATCTGCCTC ACTTCTTTTCATGTCTTTGGGAGTTGAATTCTACAGCTACACATCCTTCTGCTTTCTGGTAACAATTATGGGTTTGGTAA TACCTTGGAGTTTCACGTTAGCAGTGGTTGATGGGTACTCAACTCTGGTAAAATGCCCCGTTCGTCAACCAGGAATACTG TTGATTATCATTGTGGGAGACTGGGTGTTATCAACCCTAACATTAGCAGCAGCTTCCTCAACAGCAAGTGTGGTAGATCT CCTGCTGAACTCCGACGGGTCTTTTTGTCCTATAAAGTTTTGCTGCAGGTACAGGATATCTGCAGTTATGGCCTTCCTGA CATGGTCTCTATCTTTGGCATCCTCTCTTTTTAACCTTTGGCTATTACCCTCTTTGTGA
Protein sequence (LotjaGi3g1v0503900.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDEFPGSVGTSASLSLRLGQTICSSASLLFMSLGVEFYSYTSFCFLVTIMGLVIPWSFTLAVVDGYSTLVKCPVRQPGIL LIIIVGDWVLSTLTLAAASSTASVVDLLLNSDGSFCPIKFCCRYRISAVMAFLTWSLSLASSLFNLWLLPSL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 36 | 36 | - | – | |
| PANTHER | 1 | 151 | 151 | 1.5E-80 | – | |
| PANTHER | 1 | 151 | 151 | 1.5E-80 | – | |
| Pfam | 8 | 136 | 129 | 2.3E-23 | ||
| Phobius | 37 | 58 | 22 | - | – | |
| TMHMM | 37 | 59 | 23 | - | – | |
| Phobius | 59 | 77 | 19 | - | – | |
| Phobius | 78 | 105 | 28 | - | – | |
| TMHMM | 79 | 101 | 23 | - | – | |
| Phobius | 106 | 125 | 20 | - | – | |
| Phobius | 126 | 149 | 24 | - | – | |
| TMHMM | 127 | 149 | 23 | - | – | |
| Phobius | 150 | 152 | 3 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0503900.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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