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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0504100 |
| Transcript ID | LotjaGi3g1v0504100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT2G15980.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9XIM8|PP155_ARATH Pentatricopeptide repeat-containing protein At2g15980; TrEMBL-Plants: tr|A0A0R0HG21|A0A0R0HG21_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0504100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:92221391..92225838) extracted from Lotus japonicus Gifu genome v1.2.
TGCAGACAAATTTTACCCTAAAAATTTGTTTTTCCCCCCAAACCAGACAAAACAGATTCACAAGCTATGGTGTGATTTGT CAATGGCGATTCAAGCTCAACTAGTTAAACAATTACCCCAAATTCTCAATCCCAAACCCTTATCCCTCTTCTTCTTCTCC TCTTCATGCTCCCAAAATCACCAAAGCGTGGTGGTAACAACCGCAGTTTCCATCCTCACCAATCAACGTTCCAAGTCCCG TTGGGGCTATCTCCGATCAGCGTGCTCCGACGGCATCAACCCCGATGAGTTTTCCGAAATCGCCCTCCACCTCAAGAACA AACCCCACCTCGCTCTGAGCTTCTTCCAATGGACCAAATCGGAATCCCTCTGCCGCCACAACCTCGCCTCTTACTCCACC ATCATCCACCTCCTCGCACGTGGCCGCCTGAAATCACACGCCTCCGACGCCATCCGCACCGCCCTCCGCGCTCCCGACGA CGACGAACACCGTTGTTCCGATTCCCCTCCTTTGAAACTCTTTGAGACGCTTGTCAAAACCTACCGAGAGTGTGACTCTG CTCCGTTCGTGTTCGATTTGTTGATCGAAGCATGTTTGGAATCGAAGAAGAGTGTTTCGCCTTCGATTGAAATTGTGAGA ATGTTACTCTCACGCGGGATTAGCCCCAAAGTTAGCACGTTGAATTCTCTGATTTCTAGGGTTTGTAAAAGTCGAGGGGT GGATGCAGGGTACGCGATTTACCGGGAGTTTTTCCGGTTAGACGAGGAAAAAATGGAGATTTTGAAAAGGGGTTCTGGTT TTAGAGTGATCCCTAATGTGCATACTTATAATGCATTGATGCTGTGCTGTTATCAGGATGGTTTAGTGGAGAAGGTAGAG GAAATTTGGCATGAAATGGGTGAAATGGAGTGTGATCGCAATGCTTATAGCTATAGTGTGTTGATGGCTGCTCTTTGTGA ACATGGGAGGATGGAGGATGCTGAGAAGTTGTGGGAAGAAATGAGAGAGGAGAAAATTGAGCCGGATGTAGTTAGTTATA ATACCATGATTGGTGGGTTTTGTAAGGTTGGAGAGGTTGGAAGAGGTGAAGAATTTTTCAGAGAAATGGGATTGTCTGGT ATTGAAGGTACAGCTTCAACTTATGAGCATCTTGTCAGGGGGTATTGTAATGTTAGGGATGTTGATTCGGCTGTTCTTGT TTATAAGGATATGTCTAGGAGGGATTTCAGGCCTGATGCTTCAACGCTTGACATGTTGATTGTGTTACTTTGTGATAAGG GAAAGGTTCAGGAAGCTCTGGAGTTTTTAAAGCATGGTGTTGGTAAATTTGATTTACATCCCTTGGAAAAGAGTTATGAG GCCTTGATAAAGGGGTTATGTTTTGAGGGGAGGATGGAAGAAGCATTGAAGCTTCAGGCAGATATGGTGGGAAAAGGGTT TCGACCTCATTCTGAAATATATGGCGCTTTTATTGATGGGTATATTAGACAAGGGAACGAAGAAATGGCTGGAGCTTTGA GGAAAGAAATGCTGCAATCTCAGATACAGAGCTAACAGAATATCTCCTGTTTGCCACTTAGGGTGAACATAATTAGTTTT TCATATAGGTTCTTGCTGGGTGAAAAAATGAACTGTATACTGATCTGTTGTTTATGTCTTCTGAATCTATTCACAATAAC GGATTGAAGACAAGTCTGGTGAGCTTTTCTTGAAATTCTGACAATGATAATCAACGGTATTCCTGGTTGACGGATGCGGC ATTTTTTTTTACCAGAGCTGAGTACAAATCAACCAATGCTAATGTGACACTCCAAGGTATTAGTACCAAACCCATAATAA TTACCATATAGTTTGGACATGGATAATGAACACAAAAATCGACCCGTTAATTAACAGAAGAATCAACTAATTCACTTAAA ATGGTTGTCTTCTCAACTTTAAGACGTGATCATATTTGAAGTAAAATTAAATATTTGTACTATTCTATAGAATAAGATGT GTGATAAGTTGAATGAACTCCAGGTTAGATGATTTATGAGTAGCTTATATATTAAAGCAAAGGTGTATTAGAGACATAGC ACAATCATAATCTCAGGGAGAAGTAATCTTAGAAGATGAAGCCAGAAAAACCAAACCAACATATGTTAAAAGATGTTAAG TAGAAAGAGAGGAGGAAGAAGTCATGTATACGATGATTGATGTGATTGATAGAGGGCAAAAATAGTGTCCGGTTTTTTCT CATCAAATTGATGGTGATTTATTTTTATTGAACCACTCTTGCAGGCAAAGTCATAGTAGCATAGAGGATGACAAAGCAAT TCTTGCACCGTAATCGATACTCCTATACTTCGGAAGATGAATTTAACTCAATGGGGGAGAATCGAAAGGGGGAGAGGAGG TGATAGAAATTACCAGAAAGCTGTGTATCTGTAGAATTCAACTCCCACAGACATGAAAACAAGTGTTAAAGATGAGAATG TGGTCCGGGCTATGATAGTGGGAGAGAATTTGTGACCAACTTGGTTCGAAGTGCAATGGCTGGTGGTAAAAGCCCAAGAT GTAAGGCACTATTAGTGTCTTAAGAATGCCAACATCTCAGATATGCTATCTTTCCCTGACAGATTTTGATAGAATAATAT TTTAAAGAGAGTTCTTAGTAATACCCATCAGCCAATCTTGATGCCATTAGGCTGTATCGTTTTGATTCATGTTTTATGTT TCTATCTATCAAATGTTATGTCATTATTCTCATCCTTTGTACTATATGAATCATGTAGTATTAATACACCAAGTGTAAAA GCAGTAACCTTTGTTGAGAGATGTCTCTGTCTAGCACAAGAAAGGAAAAATATTAAAAAGGTTTTGAACTGCACCGAAAA GGAACAAAGTGTTGAGGAAAAAGTTTTCTAGAAATGGATGTTTCTCATGTACATGAGGCAACCGATTAGGTGTGTTTTTT AAACTATCTTTGTTTTCCAAAGGATAGGATAATGTGCAGTTGAAAAAAAACATTATTCTTCATGTAGTACTGATTGGTAT TTACTCTTTTCATTCATATTGTGACACTTACTCATGTATGGTTAGTTATCCAAACTATTTTTAGTTTTTGCTTTGTCAAC ATGGACCATTTGATGATTGAGATTGGGACTGTGAATAAGTAAAAGAAAAAACTTAGAAGAAAACTCTCATATATTGCCAT GAGACTAATAGAATCACTTGTTATTGTTGGAAAAAAAAGTGAGTTTTTATTTGAACTATTTTTGTTTTTTATCTCTTTCC CTTTGTTTCTACTTTTAAATTGAAAATTTTTATGCAAATTTTAAAAGTGATTCGCCAAACCAAACAAAGGTTAGTTCTAA ACCGGATTTTATGCAAACTAAATTTAATTCAAAACTAGGTAGTTCTGGATAGGCTTTTGTCCTTGGGAACACTTCAAATG ACTGTTTTTGCATTCTCATGTGTAAATAATAATAATATTCCAACTTAATTGCACTGAAATCTTAATTTCTCCCCATTTCA CTTCTGCAGAAAAGGAAGGCCGAGACAAGCAATGATCCTTCTGTTTCCAAGTGAGTTAATATGAGACGATGAGAGGCAGC AGAATTAGATCGAATAAGTTGTTATTGAATGTGGTCCAGAATTAGGCGCTTGCAACTTGAAAAATCTCAACCGATCGGTG AATATCATAGTTCAAAAACATCTATTCTCTATAGGGAGAGACCTAGCTTGGCTGCAACCCCAAGTTCATAGAATCAAGCC TTCTATCATTTGAAATAGAAATACAATAACCAAAAGAAATACAATAATTATAAAAGGAGTCAGCACATCTGCTCATAATG TTCAAATCACTCGGTTGGAATCAGCTTGGCTCTGCAAGAAAATAATAAAATAAGAAAGAAATTTTTTTTATCGGTACAAA ATGCAGAGAAGGAATGCGACAATCTTCAATATGTTCGCCAATTCAACAAATTAGCCTTGGTGCAATAAGGAGGAAAGGAG AAAAAGGAAGATCCATCAAAAGCATATGAATGAATGTGTTTTTGATGCGCAAGTACATCCATGTGTGACACCATATGATT GACAAAGAGACATCAGAAGTAGTATCCCAACACCATATGAAATAAAGTGATGACAAAACCTTAAATAGAAAATCGACTGA ATTCAAATTAGCATATTTTCACTTTAAGAGTCCTTTATGAGTGTGGTACATATGGATTATCCCACCATGTTAATTTAACA GTGTCAGTAACAACCTCCATTCAGTCCATTGAATCCATTATCAAATGGAAAAGAAAAAAACAACTTGTTTATTAATTGGG ATTTGGAAGGAAAAAGAATGGACCATGAGCTAGTGTAGTCACATTGCACTCTTTCCTTCTCGAATCTTATGTCGTGAATC ACAAGTGTAAGCCACAAAGAAATTTATTCTCATTCTTATTATGTTGCA
CDS sequence (LotjaGi3g1v0504100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGATTCAAGCTCAACTAGTTAAACAATTACCCCAAATTCTCAATCCCAAACCCTTATCCCTCTTCTTCTTCTCCTC TTCATGCTCCCAAAATCACCAAAGCGTGGTGGTAACAACCGCAGTTTCCATCCTCACCAATCAACGTTCCAAGTCCCGTT GGGGCTATCTCCGATCAGCGTGCTCCGACGGCATCAACCCCGATGAGTTTTCCGAAATCGCCCTCCACCTCAAGAACAAA CCCCACCTCGCTCTGAGCTTCTTCCAATGGACCAAATCGGAATCCCTCTGCCGCCACAACCTCGCCTCTTACTCCACCAT CATCCACCTCCTCGCACGTGGCCGCCTGAAATCACACGCCTCCGACGCCATCCGCACCGCCCTCCGCGCTCCCGACGACG ACGAACACCGTTGTTCCGATTCCCCTCCTTTGAAACTCTTTGAGACGCTTGTCAAAACCTACCGAGAGTGTGACTCTGCT CCGTTCGTGTTCGATTTGTTGATCGAAGCATGTTTGGAATCGAAGAAGAGTGTTTCGCCTTCGATTGAAATTGTGAGAAT GTTACTCTCACGCGGGATTAGCCCCAAAGTTAGCACGTTGAATTCTCTGATTTCTAGGGTTTGTAAAAGTCGAGGGGTGG ATGCAGGGTACGCGATTTACCGGGAGTTTTTCCGGTTAGACGAGGAAAAAATGGAGATTTTGAAAAGGGGTTCTGGTTTT AGAGTGATCCCTAATGTGCATACTTATAATGCATTGATGCTGTGCTGTTATCAGGATGGTTTAGTGGAGAAGGTAGAGGA AATTTGGCATGAAATGGGTGAAATGGAGTGTGATCGCAATGCTTATAGCTATAGTGTGTTGATGGCTGCTCTTTGTGAAC ATGGGAGGATGGAGGATGCTGAGAAGTTGTGGGAAGAAATGAGAGAGGAGAAAATTGAGCCGGATGTAGTTAGTTATAAT ACCATGATTGGTGGGTTTTGTAAGGTTGGAGAGGTTGGAAGAGGTGAAGAATTTTTCAGAGAAATGGGATTGTCTGGTAT TGAAGGTACAGCTTCAACTTATGAGCATCTTGTCAGGGGGTATTGTAATGTTAGGGATGTTGATTCGGCTGTTCTTGTTT ATAAGGATATGTCTAGGAGGGATTTCAGGCCTGATGCTTCAACGCTTGACATGTTGATTGTGTTACTTTGTGATAAGGGA AAGGTTCAGGAAGCTCTGGAGTTTTTAAAGCATGGTGTTGGTAAATTTGATTTACATCCCTTGGAAAAGAGTTATGAGGC CTTGATAAAGGGGTTATGTTTTGAGGGGAGGATGGAAGAAGCATTGAAGCTTCAGGCAGATATGGTGGGAAAAGGGTTTC GACCTCATTCTGAAATATATGGCGCTTTTATTGATGGGTATATTAGACAAGGGAACGAAGAAATGGCTGGAGCTTTGAGG AAAGAAATGCTGCAATCTCAGATACAGAGCTAA
Protein sequence (LotjaGi3g1v0504100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAIQAQLVKQLPQILNPKPLSLFFFSSSCSQNHQSVVVTTAVSILTNQRSKSRWGYLRSACSDGINPDEFSEIALHLKNK PHLALSFFQWTKSESLCRHNLASYSTIIHLLARGRLKSHASDAIRTALRAPDDDEHRCSDSPPLKLFETLVKTYRECDSA PFVFDLLIEACLESKKSVSPSIEIVRMLLSRGISPKVSTLNSLISRVCKSRGVDAGYAIYREFFRLDEEKMEILKRGSGF RVIPNVHTYNALMLCCYQDGLVEKVEEIWHEMGEMECDRNAYSYSVLMAALCEHGRMEDAEKLWEEMREEKIEPDVVSYN TMIGGFCKVGEVGRGEEFFREMGLSGIEGTASTYEHLVRGYCNVRDVDSAVLVYKDMSRRDFRPDASTLDMLIVLLCDKG KVQEALEFLKHGVGKFDLHPLEKSYEALIKGLCFEGRMEEALKLQADMVGKGFRPHSEIYGAFIDGYIRQGNEEMAGALR KEMLQSQIQS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 72 | 223 | 152 | 1.1E-12 | ||
| ProSiteProfiles | 100 | 130 | 31 | 5.02 | ||
| PANTHER | 144 | 416 | 273 | 2.7E-66 | – | |
| ProSiteProfiles | 160 | 195 | 36 | 7.509 | ||
| ProSiteProfiles | 196 | 230 | 35 | 6.511 | ||
| Gene3D | 224 | 309 | 86 | 1.1E-18 | ||
| ProSiteProfiles | 245 | 279 | 35 | 9.843 | ||
| TIGRFAM | 247 | 280 | 34 | 2.2E-5 | ||
| Pfam | 248 | 276 | 29 | 7.2E-5 | ||
| ProSiteProfiles | 280 | 314 | 35 | 13.691 | ||
| TIGRFAM | 282 | 316 | 35 | 3.2E-11 | ||
| Pfam | 287 | 328 | 42 | 9.3E-14 | ||
| Gene3D | 310 | 407 | 98 | 3.3E-24 | ||
| ProSiteProfiles | 315 | 349 | 35 | 11.718 | ||
| TIGRFAM | 317 | 348 | 32 | 2.6E-7 | ||
| ProSiteProfiles | 350 | 384 | 35 | 10.972 | ||
| TIGRFAM | 353 | 386 | 34 | 1.7E-7 | ||
| Pfam | 353 | 397 | 45 | 9.6E-8 | ||
| ProSiteProfiles | 385 | 420 | 36 | 7.859 | ||
| Gene3D | 410 | 489 | 80 | 1.2E-12 | ||
| PANTHER | 420 | 487 | 68 | 2.7E-66 | – | |
| ProSiteProfiles | 421 | 455 | 35 | 10.797 | ||
| Pfam | 424 | 453 | 30 | 1.6E-4 | ||
| TIGRFAM | 424 | 455 | 32 | 1.4E-4 | ||
| ProSiteProfiles | 456 | 490 | 35 | 7.969 | ||
| Pfam | 459 | 486 | 28 | 0.026 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0504100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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