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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0504500 |
| Transcript ID | LotjaGi3g1v0504500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Non-symbiotic hemoglobin 1; TAIR: AT2G16060.1 hemoglobin 1; Swiss-Prot: sp|Q9FVL0|HBL1_MEDSA Non-symbiotic hemoglobin 1; TrEMBL-Plants: tr|Q3C1F4|Q3C1F4_LOTJA Nonsymbiotic hemoglobin; Found in the gene: LotjaGi3g1v0504500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:92242512..92245846) extracted from Lotus japonicus Gifu genome v1.2.
TTATTTTGAAGCCAATTTAATGCCAACATGTCAATAACTTGTGCCAAAAGGAAAAATGAAAACGACTCATACTTGTGCCA CGGGACTCATGTTAAATAGTGTGAAACGGATCTTGTGTTGTTTTTGTTCCTTGATTCTTGCCACAAGAAACACCTACCTA GCTTTTGGGCACCTTGAATGGTTACTCTACTCACCCTAGCCTAATCTTAGTGTGAATTAGAGGGAAATGGAATCAGATCG TGCATGTACTTAATGAAAGGTGAAATGCAACAAATAAATTATAAATAAATTAACTCTTTTACAAGATTGTGAATCAACAA ATCTTGTGCAACATGGCAACCAAAAAAATGGAGTATTGACTCACCATTGCCATGAAGAAAAGAACCAACAATGAATCCCA CTGAAAAAGAAGCAGTACATGAATTTTGGTCACGGCCATGAAGAATATATTCTTGGGGAGAAGCTTATGATGCAACTAGC TGGTGCCATCAAATTTAAAATGAGCTCATCTTCTTAGACTCTCATCCAGAAGCTTATGATGCAACTTCATCTTCGTTTTG GAAATTAAATTCTGAAAAAACCACAACATTGCCCTATCTCCTACATCACTTATTATTATTATTTTATTCACCAAAAAAAA GGTGGCAGGCCCATATATACTTGACAAAGTTCTTTTTTTTGTGGGTCTTCAAACACTTGGCAGAGTTCATTTCGACAATA ATAGATCATTCAAATGATGGGCCTTTCAATTGATGGCTACTACTTGCATACACTTCACACCCAAAAAAGAAAACACTTGA TGAATAATCAATGGCTGTCCAGAAGAAAGTTGATAAGTTCATGGATGACGCAGGAAATTGTCAACAATTCAATTCAACCC ACGTGACTGACTCATGTTGAACTCTGAAACCACTCTCTTCTCGCCGCATAGCACATAGTTTTTTGGGCACCATGTTTAAT TCCATTCCACGTGGTTTCCTACTCATAATTTGATTCAAATCCAAACACGATAATAAACTCTTCATTGCCATGAAGGGCCA ACTTTCATCTTCAATAAAACAACTATAAATACTTTTCACCAAACAAGAGTAGTAATCACATCAATTCCACCATTTTCTCA CTTCACTTCCATCGCAATTCTCAAACAAATTAACAACATGTCCACCCTTGGGAGCACATGTTTCACTGAAGAGCAAGAAG CTCTTGTGGTCAAGTCATGGAGCGTGATGAAGAAGAATTCTGCTGAACTGGGTCTCAAGCTTTTCTTGAAGTAAGTCATT TAATTTCATCAACATTATAAGTTCATGGCATATATAGTTGTATTTTCATTTTTGTCCTTAGACAACAATGTGCTATTTAG AACAATTGAATTGATAATAAAAATTGTGTCTTTGTAGAATATTTGAGATTGCTCCATCAGCTCAGAAATTGTTCTCTTTC TTGAGAGATTCAAAAGTTCCTTTGGAGGAGAACCCCAAGCTCAAGCCTCATGCCATGTCTGTCTTTGTCATGGTAACCTT ACTTCCTTTCACTCTGTCTCCATTCACCATTTGAATGAATGATAAATACTATGTTTAGATTAACTACTCTTTTCTCTTTC ATCAGAATCTACCAAGGAGCTTCTCATGATTTTGGTTACAAAATAAATTGTAGAAGAATTTTCGAATACGAAATCAGATA AATTAAGAAGCTTTATTTTGTTTTTGTTATTGCAGACTTGTGAATCAGCAGCTCAACTGCGGAAGGCTGGAAAAGTCACT GTGAGAGAATCAACCTTGAAAAAGCTAGGTGCTACCCATTATAAATATGGAGTAGTAAACGAGCATTTTGAGGTATATAT ATAAAATTTCAATTAGTATGTTTGAGAAAGCATTGTTTATTTGAAAGTGTCAACATATACAAGATTGAAAATGACATTTG CTATATTAACTTTTACATCAAGTTGTATAAAACAATGTAATCTTGCATATGGAGTGCTTTTTGTATTTGATGGGGCATAT GTATAATTTATTCTTTGGTTTTGTAAAGGTTACAAAGTTTGCACTACTGGATACCATAAAAGAAGCTGTACCTGAAATGT GGTCACCAGAGATGAAGAATGCATGGGCACAAGCTTATGATCAGCTGGTCGGTGCCATTAAATCTGAAATGAAGCCATCA TCTTCTTAGACTCAATATCTTCCAGCTCATGCACTTCCTGTACTTCCTAATTAAGTTTGATATTTGATAGAGTTACCCGG GTCCCCTGTTCACAAAGCGCTAGTGTTTGGGTTTATAATTTTCTTTTGTATGTATATATACAATAATACTTGATTAATAT TGCTAATGGGGATGCTAGGTTGTAAAGTGTTTGTATTCAACAATTCTGTAATTGAAAGTAATTGTGTAAATTGTAGTGTT TATGTAGTTATTTACTTATTTGATATTGAGGTGGTTGGTTCACTTAGTACGTACCACTAAAGACTTTCGTCCAATAGAGC ATACACAACTTCTTTGTAAAAAATGAATTACAACTACATTATGTAATTGCAGAGCTGTGTCAGTGTATGCTAAATTCCTA ATAGTTCTAAAGCTGAATATTCTTTTTTTCCCCTCTATTTTAACAGAAGACAATAAAATACACTCAAGATAAGTTTCTTA GCTTCACTTTTCTTTCCCCCTATCAGACACTCCACAATTTGTTCTTTACTTTCTTATCAAACTAAAAGTTAATAGTCCAA ATACAGAGAATTTAAACAATGAACAAAAATTAAAAAAAAAAAAAGTTTATGTCATTCCACATTGATCTATGTGAAGCAAT GCCATGATGTCCGCTTTGTCCTTAAAGCCCTCTAGGCATACATGAAAGGCTTCCATGAGTAAGGCAATTTGCATGAGAAA CAGAAGATGATTTCAGCATTGAATTGGACCAATTGGTAGCCTCCAAATGAACTAGAGCTGCATTAGCCTTGATGGCTAGT GCACACAACAACTGCAGAGAAAGTGGTATGTGGGATTTGGAGAGTGGAAACAAGAAATATATCTGACCCAAATGAAGCTC TTCATTTGGTTTCACATGAGGCAATAGTGAACCAACATGCATAGACTCTGAGCTACAGAGGAAGCAGTTTTGGTTCTGGG ACAGAACACGTTCTGCTTTTATGGGCTTTTTGAATTGCTTTAGCTTACCGTCCAAGTGAATAATGCTCACGGTGGTTTTC CATCTAGAGTTTCCACCTTTGGGGGTGAATTGAGAGGATGAACATGTACCCATATGCTTTTCTGCGTGTTACTGCTTTGT GTGTCAGTGGGACAATGGAAACAGAGAAAACAGGGGAAACAATGGAAATAGAGAA
CDS sequence (LotjaGi3g1v0504500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCCACCCTTGGGAGCACATGTTTCACTGAAGAGCAAGAAGCTCTTGTGGTCAAGTCATGGAGCGTGATGAAGAAGAA TTCTGCTGAACTGGGTCTCAAGCTTTTCTTGAAAATATTTGAGATTGCTCCATCAGCTCAGAAATTGTTCTCTTTCTTGA GAGATTCAAAAGTTCCTTTGGAGGAGAACCCCAAGCTCAAGCCTCATGCCATGTCTGTCTTTGTCATGACTTGTGAATCA GCAGCTCAACTGCGGAAGGCTGGAAAAGTCACTGTGAGAGAATCAACCTTGAAAAAGCTAGGTGCTACCCATTATAAATA TGGAGTAGTAAACGAGCATTTTGAGGTTACAAAGTTTGCACTACTGGATACCATAAAAGAAGCTGTACCTGAAATGTGGT CACCAGAGATGAAGAATGCATGGGCACAAGCTTATGATCAGCTGGTCGGTGCCATTAAATCTGAAATGAAGCCATCATCT TCTTAG
Protein sequence (LotjaGi3g1v0504500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSTLGSTCFTEEQEALVVKSWSVMKKNSAELGLKLFLKIFEIAPSAQKLFSFLRDSKVPLEENPKLKPHAMSVFVMTCES AAQLRKAGKVTVRESTLKKLGATHYKYGVVNEHFEVTKFALLDTIKEAVPEMWSPEMKNAWAQAYDQLVGAIKSEMKPSS S
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 6 | 159 | 154 | 1.2E-100 | – | |
| PANTHER | 6 | 159 | 154 | 1.2E-100 | ||
| Gene3D | 7 | 155 | 149 | 5.0E-57 | ||
| SUPERFAMILY | 7 | 157 | 151 | 6.47E-44 | ||
| CDD | 9 | 157 | 149 | 8.29217E-96 | – | |
| ProSiteProfiles | 9 | 157 | 149 | 28.097 | ||
| PRINTS | 10 | 27 | 18 | 1.5E-44 | – | |
| Pfam | 13 | 121 | 109 | 2.1E-20 | ||
| PRINTS | 35 | 55 | 21 | 1.5E-44 | – | |
| PRINTS | 63 | 91 | 29 | 1.5E-44 | – | |
| ProSitePatterns | 63 | 74 | 12 | - | ||
| PRINTS | 128 | 154 | 27 | 1.5E-44 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Oxygen binding | Interacting selectively and non-covalently with oxygen (O2). | ||
| Molecular function | Heme binding | Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. |
Expression pattern of LotjaGi3g1v0504500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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