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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0504600 |
| Transcript ID | LotjaGi3g1v0504600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Non-symbiotic hemoglobin 1; TAIR: AT2G16060.1 hemoglobin 1; Swiss-Prot: sp|Q9FVL0|HBL1_MEDSA Non-symbiotic hemoglobin 1; TrEMBL-Plants: tr|Q3C1F3|Q3C1F3_LOTJA Nonsymbiotic hemoglobin; Found in the gene: LotjaGi3g1v0504600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:92246168..92248745) extracted from Lotus japonicus Gifu genome v1.2.
CCTCACACCACACACGCATGTGAAATCCTAATAAACAGGAATAAAATAACTCTCCATTGTCACAAAGGGACACTGAATCT CACTATAAAAACGGTACACTACAAGTGAAGAACATCATCACCGATTTTCTCATCTCTACAATTTCATCAACAAATAAATA TCTTAGCATCATGGCAGAAAACACAACCACCATTGCTTTCACGGAAGAGCAAGAAGCTCTGGTGGTGAAATCATGGAACG CTATGAAGAAAGATTCTGCAGAACTGAGTTTCAAGTTTTTCTCCAAGTAAGCCAACATTTTTATCAACTTACTCTTTGAT TATGTATATTACAAAATGTTAATTTTTTGAACTGATAGATGAATTTGATCTTGTTAGAATACTTGAGATTGCTCCACCAG CTAAGCAATTGTTCTCATTCTTGAGGGATTCAGAGGTTCCCTTGGACCAAAACCCCAAGCTCAAACCGCATGCTATGTCT GTCTTTCTCATGGTAAGCTAATTTCATGAGATATTGTAGTAATTACATCAAAATAAATCAAGAATAAATATTACAATATA CTATTCTAACAGTAATATTGGAAATTCTTGAGATATAGCAGAATATGGTATGGAGATACTATTGAAACATTGGTACAACT CTAGTCCTAAAGGAAGTAATCACAATCGTTAATTGAGAAATCAATAGCTGAGATTCTTTTATGGTGTTACCTAAGTTATC TCCACACCCGGTAGCCGCGAGTCTAATATTTCACCTTACTGTTAACACACTAAGTGGTAAAAGTTGAGATTTTAAGATCA CGGTTTGTTATAGATGTGAGTATAAAATCACAATCCGAATAAATTGTGATTACTTATTTTGTCGAGTCAAATCCATGTAG ATATATGGTATAATTGTTCTAGTTATCTTTGAGATGAGAACATCTACATCTTTGGGGCTAGTTCTCTAGCAAAGTTTTTT TTTTCACTCAAACATGAGACAATCAAACATTATCACTTGAATGAATCGGTCATTAATTCAATTTGTGTTTAGTTTTCAAT TCACACGCATTATGAGTTAATTTCAATGGAAAAACATGAATTCCAATTAAGCAATTGTGACATGAACTCCTTATTTTTGT TGATCTCAACTTGAATCCAAAAACTTATATGAAATATTGAAATAGTTGTACCAATATCTATCTATGTGATATATATCTTT CATATTAATATCTTGATATTATAACCTGATATGATGAGACTATAGCTGGACCAATATATAAAGCATATCTTTAGAGCTAC TTCGTTTATTGAGACTATCATGATTTTGTCACCACTTACCATTTGGATGAATATAAAAAAGGAAAGAAAAAGCTATGTCT TCTATGATCAATTTTGTTGTTGTTGACTTGTTGTTATTGCAGACCTGTGAATCTGCTGCTCAATTGCGGAAGGAAGGTAA AGTTACCGTGAGAGAATCAAACTTGAAAAAGCTAGGGGCTACCCATTTCAAAAAAGGTGTAATTCCGGAGCATTTTGAGG TAAATTAAATAAACTTTCAATCAGTATTAAGGTTGACAAAGCACTATTGTTGATTTGTAACAACAATCATATTTGACTAA ACACCTGAGCATTTCCTTTGACGTTTTCAACCTCGGAAAGTCGAATCCCACATTCTAAGACAGATTAAAGTATTAAACAA ACGTTTTAGACATACTACATATTCCCTATTTTTCTATTTATCTCATTTTTCTCATCACACCATAAGTCTATCATTTTTCT TTCTTCTCTTCGTTCATCTCGCCTCTTAATATTGGTGTCTACACGCAAAATAGGTGTAGATGAATCACTCTCCTTGTGAG AATTAATATATGCAGATGGAAAAATGACATCTGCTGATATTGAAATTAAATAATCACTGATGATAGAACTCAGATTCCAT TTGATTGTATGAGACTGGCAGGAAACAGAAATAATATGACAGGGGAAAAACATGTGCATATCTCTGCACGCTACATTATT TAATCTTGCATTGTGACTGGTTCTGTTTTCTGATGGAATTTTTAATAATACAGAGCAATTTCCTAGGAAGAGTAATGTAT AGTTTAATTATACTTTGATCTTGTGATTAAAGGTAACAAAGCAGGCCCTTTTGGACACCATAAAAGAAGCAGTGCCTGAA TTGTGGTCACTAGAATTGAAGGATGCTTGGGCAATCGCTCATGATCAGCTAGCCAGTGCCATCATAGCTGAAATGAAACC AGAGTCTTAGACTCTTTTTTCAACCCTTTGCTCTCAGTTTCAATAAAATTGATGGGGTTTGTATGAACAAAATGTACTAC TTATTGTTGCTTTGGGGCTGTGTCTGTATAATGTTGAAATTTGTTCAGAACTCATGATTCAGCAATTGAATATATATTTG AATGTGATTATTATTTGCACCTGAGTTCCACATCTTCCTAAAGTGATAAAGAAATAAAAGGAGGAGATATGAAAGTTATG GTTTGTGAACTTATATTTATAAAACGCTCACTATCAAGTAACATGTTTATTAACTTATGTCTTTTTCATTTCGATAAATG TTAATGAAATCATTACAC
CDS sequence (LotjaGi3g1v0504600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGAAAACACAACCACCATTGCTTTCACGGAAGAGCAAGAAGCTCTGGTGGTGAAATCATGGAACGCTATGAAGAA AGATTCTGCAGAACTGAGTTTCAAGTTTTTCTCCAAAATACTTGAGATTGCTCCACCAGCTAAGCAATTGTTCTCATTCT TGAGGGATTCAGAGGTTCCCTTGGACCAAAACCCCAAGCTCAAACCGCATGCTATGTCTGTCTTTCTCATGACCTGTGAA TCTGCTGCTCAATTGCGGAAGGAAGGTAAAGTTACCGTGAGAGAATCAAACTTGAAAAAGCTAGGGGCTACCCATTTCAA AAAAGGTGTAATTCCGGAGCATTTTGAGGTAACAAAGCAGGCCCTTTTGGACACCATAAAAGAAGCAGTGCCTGAATTGT GGTCACTAGAATTGAAGGATGCTTGGGCAATCGCTCATGATCAGCTAGCCAGTGCCATCATAGCTGAAATGAAACCAGAG TCTTAG
Protein sequence (LotjaGi3g1v0504600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAENTTTIAFTEEQEALVVKSWNAMKKDSAELSFKFFSKILEIAPPAKQLFSFLRDSEVPLDQNPKLKPHAMSVFLMTCE SAAQLRKEGKVTVRESNLKKLGATHFKKGVIPEHFEVTKQALLDTIKEAVPELWSLELKDAWAIAHDQLASAIIAEMKPE S
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 159 | 157 | 2.0E-99 | – | |
| PANTHER | 3 | 159 | 157 | 2.0E-99 | ||
| SUPERFAMILY | 6 | 158 | 153 | 8.34E-40 | ||
| Gene3D | 8 | 155 | 148 | 2.5E-52 | ||
| ProSiteProfiles | 9 | 158 | 150 | 26.716 | ||
| PRINTS | 11 | 28 | 18 | 3.3E-41 | – | |
| Pfam | 14 | 123 | 110 | 8.3E-19 | ||
| PRINTS | 36 | 56 | 21 | 3.3E-41 | – | |
| ProSitePatterns | 64 | 75 | 12 | - | ||
| PRINTS | 64 | 92 | 29 | 3.3E-41 | – | |
| PRINTS | 129 | 155 | 27 | 3.3E-41 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Oxygen binding | Interacting selectively and non-covalently with oxygen (O2). | ||
| Molecular function | Heme binding | Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. |
Expression pattern of LotjaGi3g1v0504600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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