Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi3g1v0507500 |
Transcript ID | LotjaGi3g1v0507500.1 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Ras-like protein; TAIR: AT3G18820.1 RAB GTPase homolog G3F; Swiss-Prot: sp|P31022|RAB7_PEA Ras-related protein Rab7; TrEMBL-Plants: tr|I3SNX3|I3SNX3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0507500 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:92459027..92462996) extracted from Lotus japonicus Gifu genome v1.2.
AAAAAATGTGTGTAATGTAATGTAACAATTATGAAAAGCGAATCCTATTATTGGGCCTGATGTGCATCAATTACAGCTGT CAGCATTGGAATATTCCGCAGTGCATACAAAGAAAGTTAGAGCGAGCGAGGAACAAGAGTAGACTCGAAACTCGAAAAGA GAGAAAGAGGTTGGTTTCGCCGGCGTTGAACACTAAAGAAAAGCGGTTAACTCTTCCTTTCTCCTCCTCCGATCTGCACG ACCATGCCTTCCCGGAGAAGAACCTTGTTGAAAGTCATCATTCTCGGTGACAGCGGGTAATTCAATTCAAATCCCCTTCC AATTCTAGGGTTTCCGCTGCAGATCCCTTTATGCTTCACTCCAATCACTCAATTCCTCACATGAATTTTCCCTCTTCTGC TTGTTTTTGTTTGGATCATGTCAATCGTAGCGTAATTCACTTCAAATCATGCTTAGTTCATTTTCAGTTACTGAGATTTA TCGTTGTTGATGATTTGCAGGGTTGGGAAGACTTCTTTGATGAACCAGTATCCTTGGTTTCTTCTTCAGAAACTCCTTAT TCTTCGCAATTAGGGTTTATGCTTTGATTATGTGTGGACTTTGTGTGTGTTTTCCCTTGACCTGTGTATTTTAGATATGT GAATAGGAAGTTTAGCAATCAGTACAAGGCTACCATTGGAGCCGATTTCTTAACCAAAGAAGTGCAGTTTGAAGATAGGC TTTTCACCTTGCAGGTTTGTGAATCGATCACGCTGTGTTGTGCTTAGCTTGTTTTTGCAATCACAGGCCAGATTTAAAAT TAGCAAAGCGTATTTTTGTTGTTGTTGTTGTTGTTGATGTTGGAGTATTATCTTTCTGATATATGCTGCTTATGCTGAAG CGTTCTTAGGTCGTAAATCTTAACCTCTGAAGTGAATAATGTTGAACTAGTTGAAGTTGGATAGTGTTGATTGCCTGTAG AGCAGAGCATCTAGTTACAAATGCATCACATGCACATGCCTAGTGGTGTCTTGGGTTAAGTTTATTTACTATGTGCTTCT TTTAATGTCTGAAAGCGTAAAATTCAAAGTGTCTTGAAACCTTTTTTTTCTAATACGGGCACGTGCACCAGATGTTAGGT AGTGCAAGATGGTGATTCCTATCATGTCTGAGAAATCATTTATTCCCCTGTTGATTTCAGATTATGATAGAATTTGTTGG ACATGTTACTTTCAAATGAAGTGCATTTTTCACCAGTTATCTCAATGTGGACTCTATAGTATTCGTGTACACTGTATGGA AATCTGATACATGGCTTTAATGAATTTTAAACTTAAGCATTTGTGATGTATACATTGAATCTGATGGGATAGAGAACGAA ATCTATTTAAATAATAACTATATTCTGAGTGATTAATGGTCAAATCTTTCTGTTTCTCTCATAAGAGCCTCTAGAGAGTC TATACGGTGGAAGACTAGTACTGAGTTGGCTGTTTTAGTTTTCTGGGTATTACACTATGAGTGGATTCATGTGTCAGCAT ATTACACACTTTGCAGTGACTGAGCTCTCTATGTAACTCTGTTCCTTGTGGAGTTATTATGTTTTTCCTATTCTACATCT CATATCAATCTCTGTTTTATATTGAAAGTATTAAGTTGCAATAGTTGAAGGTTTCTTTTCTTTCATTTTGATTATTAATA GTTTTAACCTTTACAGATTTGGGATACAGCTGGCCAGGAAAGATTCCAAAGCCTAGGAGTTGCTTTCTATCGTGGTGCTG ATTGCTGTGTTCTTGTATATGATGTTAATTCAATGAAATCATTTGACAACCTTAACAACTGGAGGGAAGAATTTCTCATT CAAGTATGTTTGTGCTTCTCTCTACATAGATGTCTCTATTTTATCTATCATTACAAGCTATGTTGTAGACATTTTATAAT TTACGAAATCCGTGATCGTTTTGACAGGCTAGTCCTTCCGATCCAGAGAATTTTCCTTTTGTTGTTATAGGAAACAAGAT AGATATTGATGGTGGGAACAGTAGAGTGGTATGTGTTCTACCCCTTACGTTTGCTATCTCTCAAAAGCTTTTATGCATCA GATGCACTCACTTGTAAAATACCTAGACATATACCGTTGAACAATGAACACAAATATGTTCTTGTGCGCAGGTTTCAGAA AAGAAGGCTCGTGCTTGGTGTGCATCAAAAGGAAATATCCCTTATTTTGAGACATCTGCCAAAGAAGGTATTAATGTTGA AGAAGCATTCCAATGCATAGCGAAGAATGCCCTGAAAAGTGGGGAAGAGGAAGAACTGTAAGTTCTTGAACATGCACATC TTTTCTTTCATTCATATATGTTAAATCAATGCGGTACAAATACATAAAATGATATCTCTCATTATGTAATGGTGTTCATC GGATTGGGGGAGCATAGTTGGTCCTATTAGTGTTCTTACATTATATATGTTGTCTCTTTGAATCTGAACATATGTGTATG ATTAATGTTAAGTTATGCTGACAAACCATTTGCTTTGGCATACATTATTAGTTGCTAGCTGATATTATTTGTGAAGTGCG TGCTTCTGCTTTTTTTTGTTGGCAATTGGCATTGGCATCATAAATTTTGGTTGTCATTGAGCAGCTTTCTTGAGCCTTGT AGGTTCTGCAACAAAACAGTACATATAATAGGAAGAGTAATTGAACAGTTTTTTTTTTTCCAATAATCTCACTACTCAAT GTGATACTATAACAACTGATCTTAGAATTGTGCCCTGTGAATGGGTATCAGTTTATATTTCAATTGCAGTATTATTTGAT AGCTACTCAGATTATGGGTCTCTTTATTGCTTGAAAGTTGATTTGTTCCTATGTTACTGATACATGTTTTTTTGGTTTTT TTCCCCATGTGGTAATTGGTGCTTATTGAAGATATCTGCCAGACACTATTGATGTTGGAAACAGCAGTCAACAGCGGGCA TCAGGATGCGAGTGCTGAATGTATAGATTTTCTTTTCAATACAAAAAATAAGTTATATTACTTAAATGTGATTCCGTCTA GACATTGCTGTCTATGAGGCTTTCATTGTACATTCCTCAAGAAACAAATTGGTCCTATGTTATCTGTTGGGTGCATGTTT GGTTTGTGTTCATCAATCTTGTAAGGTGTTCCGTTATTGTGAAGTAACTGTGTGAGACCATTCCGAAGTTATTTATTTCA TTGCCTATTTTTCTTAACCTGCATAAACAATAATTTGTAAGTCTATTCTTCATCACTATACAACAAACTCATGTGTATCC ATTGTGGTTATTGTCGCTTTACATTAGTGTGGCTTGAACGTTGAAGTAAAGAAATGCACCCATTCTCTTCCAACACTGGT GAATCCCTTGCATGATCAAATCCGAGTACTTGGTGCCAACATCATCGGAGAACCTCAATTGCGACCCCGGAGGAACAAAA TCACCATCGAGCATTAGTCCAAGAGAATGCTCCAAGAGCGTGGAAATGGAATCATGCTTGATGACTGGAGGATTAAAATT GTCAATTCACCGTGGTGGTGAAGTGGAAACAAGGTGGCACAATAGCTTAGTAAGTGTGAAGTTTTGCCAACGCAATTCAA ACAAATTCCAATCATGTAAAAACGAAACCAAACATCCTTAATTTTGAGAAAACGAACATCAACAATCTGAACCTTTTTAA GCTGCTAAAGATAAAGACTCCAATGACAAGTATGATTTCTTAACTTTAGAGTAGAGGTGGGAAGAGCAGGGGAAAGAGAG CTTTTTTTTTTCCACCCCGGTCAACAAGGGGAAGCTATCTTATATTTCGCATGAAGTGGGCACAATAAAACTAGCGAAGA AATAAAGTGGCACTGGACCTCAGCACTTCACTCGTTTTGAGTTGGTGAGATGTTATTATGTTAAAAGAATGAAGAAAATT GGTGTGCCCAGTCAAAGACAATCTTTAAAGTATCAACTTTACTCCCTTGC
CDS sequence (LotjaGi3g1v0507500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCTTCCCGGAGAAGAACCTTGTTGAAAGTCATCATTCTCGGTGACAGCGGGGTTGGGAAGACTTCTTTGATGAACCA ATATGTGAATAGGAAGTTTAGCAATCAGTACAAGGCTACCATTGGAGCCGATTTCTTAACCAAAGAAGTGCAGTTTGAAG ATAGGCTTTTCACCTTGCAGATTTGGGATACAGCTGGCCAGGAAAGATTCCAAAGCCTAGGAGTTGCTTTCTATCGTGGT GCTGATTGCTGTGTTCTTGTATATGATGTTAATTCAATGAAATCATTTGACAACCTTAACAACTGGAGGGAAGAATTTCT CATTCAAGCTAGTCCTTCCGATCCAGAGAATTTTCCTTTTGTTGTTATAGGAAACAAGATAGATATTGATGGTGGGAACA GTAGAGTGGTTTCAGAAAAGAAGGCTCGTGCTTGGTGTGCATCAAAAGGAAATATCCCTTATTTTGAGACATCTGCCAAA GAAGGTATTAATGTTGAAGAAGCATTCCAATGCATAGCGAAGAATGCCCTGAAAAGTGGGGAAGAGGAAGAACTATATCT GCCAGACACTATTGATGTTGGAAACAGCAGTCAACAGCGGGCATCAGGATGCGAGTGCTGA
Protein sequence (LotjaGi3g1v0507500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPSRRRTLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPENFPFVVIGNKIDIDGGNSRVVSEKKARAWCASKGNIPYFETSAK EGINVEEAFQCIAKNALKSGEEEELYLPDTIDVGNSSQQRASGCEC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Gene3D | 2 | 188 | 187 | 1.1E-67 | – | |
ProSiteProfiles | 3 | 206 | 204 | 32.742 | – | |
SUPERFAMILY | 5 | 182 | 178 | 1.39E-56 | ||
PANTHER | 6 | 205 | 200 | 1.7E-109 | – | |
PANTHER | 6 | 205 | 200 | 1.7E-109 | – | |
SMART | 6 | 179 | 174 | 3.0E-27 | – | |
TIGRFAM | 9 | 172 | 164 | 4.9E-27 | ||
SMART | 9 | 179 | 171 | 6.0E-95 | – | |
CDD | 9 | 182 | 174 | 2.45196E-134 | – | |
PRINTS | 9 | 30 | 22 | 1.4E-40 | – | |
Pfam | 10 | 177 | 168 | 1.4E-56 | ||
SMART | 11 | 179 | 169 | 1.6E-13 | – | |
SMART | 14 | 201 | 188 | 1.1E-5 | – | |
PRINTS | 32 | 48 | 17 | 1.4E-40 | – | |
PRINTS | 50 | 72 | 23 | 1.4E-40 | – | |
PRINTS | 116 | 129 | 14 | 1.4E-40 | – | |
PRINTS | 154 | 176 | 23 | 1.4E-40 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of LotjaGi3g1v0507500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…