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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0507500 |
| Transcript ID | LotjaGi3g1v0507500.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ras-like protein; TAIR: AT3G18820.1 RAB GTPase homolog G3F; Swiss-Prot: sp|P31022|RAB7_PEA Ras-related protein Rab7; TrEMBL-Plants: tr|I3SR51|I3SR51_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0507500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:92460630..92462548) extracted from Lotus japonicus Gifu genome v1.2.
ATGCTTAGTTCATTTTCAGTTACTGAGATTTATCGTTGTTGATGATTTGCAGGGTTGGGAAGACTTCTTTGATGAACCAG TATCCTTGGTTTCTTCTTCAGAAACTCCTTATTCTTCGCAATTAGGGTTTATGCTTTGATTATGTGTGGACTTTGTGTGT GTTTTCCCTTGACCTGTGTATTTTAGATATGTGAATAGGAAGTTTAGCAATCAGTACAAGGCTACCATTGGAGCCGATTT CTTAACCAAAGAAGTGCAGTTTGAAGATAGGCTTTTCACCTTGCAGGTTTGTGAATCGATCACGCTGTGTTGTGCTTAGC TTGTTTTTGCAATCACAGGCCAGATTTAAAATTAGCAAAGCGTATTTTTGTTGTTGTTGTTGTTGTTGATGTTGGAGTAT TATCTTTCTGATATATGCTGCTTATGCTGAAGCGTTCTTAGGTCGTAAATCTTAACCTCTGAAGTGAATAATGTTGAACT AGTTGAAGTTGGATAGTGTTGATTGCCTGTAGAGCAGAGCATCTAGTTACAAATGCATCACATGCACATGCCTAGTGGTG TCTTGGGTTAAGTTTATTTACTATGTGCTTCTTTTAATGTCTGAAAGCGTAAAATTCAAAGTGTCTTGAAACCTTTTTTT TCTAATACGGGCACGTGCACCAGATGTTAGGTAGTGCAAGATGGTGATTCCTATCATGTCTGAGAAATCATTTATTCCCC TGTTGATTTCAGATTATGATAGAATTTGTTGGACATGTTACTTTCAAATGAAGTGCATTTTTCACCAGTTATCTCAATGT GGACTCTATAGTATTCGTGTACACTGTATGGAAATCTGATACATGGCTTTAATGAATTTTAAACTTAAGCATTTGTGATG TATACATTGAATCTGATGGGATAGAGAACGAAATCTATTTAAATAATAACTATATTCTGAGTGATTAATGGTCAAATCTT TCTGTTTCTCTCATAAGAGCCTCTAGAGAGTCTATACGGTGGAAGACTAGTACTGAGTTGGCTGTTTTAGTTTTCTGGGT ATTACACTATGAGTGGATTCATGTGTCAGCATATTACACACTTTGCAGTGACTGAGCTCTCTATGTAACTCTGTTCCTTG TGGAGTTATTATGTTTTTCCTATTCTACATCTCATATCAATCTCTGTTTTATATTGAAAGTATTAAGTTGCAATAGTTGA AGGTTTCTTTTCTTTCATTTTGATTATTAATAGTTTTAACCTTTACAGATTTGGGATACAGCTGGCCAGGAAAGATTCCA AAGCCTAGGAGTTGCTTTCTATCGTGGTGCTGATTGCTGTGTTCTTGTATATGATGTTAATTCAATGAAATCATTTGACA ACCTTAACAACTGGAGGGAAGAATTTCTCATTCAAGTATGTTTGTGCTTCTCTCTACATAGATGTCTCTATTTTATCTAT CATTACAAGCTATGTTGTAGACATTTTATAATTTACGAAATCCGTGATCGTTTTGACAGGCTAGTCCTTCCGATCCAGAG AATTTTCCTTTTGTTGTTATAGGAAACAAGATAGATATTGATGGTGGGAACAGTAGAGTGGTATGTGTTCTACCCCTTAC GTTTGCTATCTCTCAAAAGCTTTTATGCATCAGATGCACTCACTTGTAAAATACCTAGACATATACCGTTGAACAATGAA CACAAATATGTTCTTGTGCGCAGGTTTCAGAAAAGAAGGCTCGTGCTTGGTGTGCATCAAAAGGAAATATCCCTTATTTT GAGACATCTGCCAAAGAAGGTATTAATGTTGAAGAAGCATTCCAATGCATAGCGAAGAATGCCCTGAAAAGTGGGGAAGA GGAAGAACTGTAAGTTCTTGAACATGCACATCTTTTCTTTCATTCATATATGTTAAATCAATGCGGTACAAATACATAA
CDS sequence (LotjaGi3g1v0507500.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTTGCAGGGTTGGGAAGACTTCTTTGATGAACCAATATGTGAATAGGAAGTTTAGCAATCAGTACAAGGCTACCAT TGGAGCCGATTTCTTAACCAAAGAAGTGCAGTTTGAAGATAGGCTTTTCACCTTGCAGATTTGGGATACAGCTGGCCAGG AAAGATTCCAAAGCCTAGGAGTTGCTTTCTATCGTGGTGCTGATTGCTGTGTTCTTGTATATGATGTTAATTCAATGAAA TCATTTGACAACCTTAACAACTGGAGGGAAGAATTTCTCATTCAAGCTAGTCCTTCCGATCCAGAGAATTTTCCTTTTGT TGTTATAGGAAACAAGATAGATATTGATGGTGGGAACAGTAGAGTGGTTTCAGAAAAGAAGGCTCGTGCTTGGTGTGCAT CAAAAGGAAATATCCCTTATTTTGAGACATCTGCCAAAGAAGGTATTAATGTTGAAGAAGCATTCCAATGCATAGCGAAG AATGCCCTGAAAAGTGGGGAAGAGGAAGAACTGTAA
Protein sequence (LotjaGi3g1v0507500.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MICRVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMK SFDNLNNWREEFLIQASPSDPENFPFVVIGNKIDIDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK NALKSGEEEEL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 171 | 171 | 29.372 | – | |
| SMART | 1 | 165 | 165 | 5.1E-17 | – | |
| Gene3D | 3 | 170 | 168 | 8.1E-62 | – | |
| PANTHER | 4 | 166 | 163 | 4.5E-92 | – | |
| PANTHER | 4 | 166 | 163 | 4.5E-92 | – | |
| TIGRFAM | 5 | 158 | 154 | 1.8E-23 | ||
| Pfam | 5 | 163 | 159 | 9.4E-52 | ||
| SMART | 5 | 165 | 161 | 9.1E-82 | – | |
| CDD | 5 | 168 | 164 | 7.83892E-124 | – | |
| SMART | 5 | 165 | 161 | 1.7E-11 | – | |
| SMART | 5 | 171 | 167 | 0.0027 | – | |
| SUPERFAMILY | 5 | 164 | 160 | 2.34E-50 | ||
| PRINTS | 18 | 34 | 17 | 1.4E-28 | – | |
| PRINTS | 36 | 58 | 23 | 1.4E-28 | – | |
| PRINTS | 102 | 115 | 14 | 1.4E-28 | – | |
| PRINTS | 140 | 162 | 23 | 1.4E-28 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of LotjaGi3g1v0507500.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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