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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0509600 |
| Transcript ID | LotjaGi3g1v0509600.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Rer1 family protein; TAIR: AT2G21600.1 endoplasmatic reticulum retrieval protein 1B; Swiss-Prot: sp|O48671|RER1B_ARATH Protein RER1B; TrEMBL-Plants: tr|I3SMX1|I3SMX1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0509600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:92670055..92672715) extracted from Lotus japonicus Gifu genome v1.2.
ATGGAAGGAACTGGAGGCAGCAGTGCCTCTGCTGCTGCACCCGTGAACCAATGGTGGCTGGAATTTTCAAAGATGTTCCA GTATTATCTCGATAAATCTACCCCGCACACTACGTATAGATGGATTGGGACCGTGGTTATCGCCTCGATCTATGTTTTGA GGGTTTTTTATGTCCAGGGATTTTACATTGTGTCTTATGGATTGGGAATCTACCTGCTCAACCTCTTGATTGGGTTTCTT TCACCTTTGGTTGATCCTGAGGTCGAGCATTCTGATGGCCCTTTGCTGCCTACTAAAGGCTCCGACGAGTTCAAACCCTT CATTCGCCGCCTTCCTGAGTTTAAGTTCTGGTAATTTAGGAATTTTGTTATAGTTGTAGGTGTATTAGTTTAGTTAACAT ATTAATGCTGCATTGTCACTGATTGAATCTGGGGTTTCGTGTTCATATTGGCTTGCTGCTTATTCGTACTCGGTCTTTTT ATATGTGAGATTCAACATTCTGTGATTTCTTTTATGTTAATTTATCATCCTGTTGTAACTGATATGACTCCATCATTTCT GAACTCCATTTGAGTATTTGGAAGGTAATAGCTGTCTAGAAAATGTCTCCCCAATTTAGCTAATCAGTTGCTCCCCACTT CCACTGCATGTCAGCATTCGTAATCAGTTCACCATCTGCATTTGGCTGCTAGTTTTTGGTCTTTGCACGTGGCAGTAGAT GCATACACGGAAGTGATCTTTTCTTTCTTGAAGGGGAAAATCTATTACTGTCTTCCCTACGCTATTCATGCCACCACCTT TCCCAAAAATGTATACCGCACTTAAAAGTACAGACTTAAAAATGTGGTATGAAAAAAATGTAAAAATGCATATGGCAATA TAAAGTGTGGTGTGCATTTTTTTCCTTACCGCAACTTAAAAGTGCGGTCTACATTTTTTTATATGGCATCTTAACACGTG GTATGCATAGGGATGGCATGAATAGGTGTGGGGATGACATCAATGGATTTTCCCTTCTTGAAGATGTATCTTTAAACAAA CTTCCTTAATCACATTATTTTCTATGGAACGAACTGCCACTTAAATATCATATTGACGTGTCAATTGAAAACTTAGGTAC GTATCTGCTTCATATTGATATGCATCATTCAATTTGTTTGTGTTGGTCGTCAGATGTTTGTGTTGGTTGTCAGATGATTG TGTTGGTTTGTCATTTTTATTTTATTTTTTTCTTTTGCAATTTGATTTCTTAACTTAGTCCAACTGTCACTTCTAAAGCT CATTTTGTCTCATCAATCAGGTATTTTTAAAGTTTTGAGACAAAGAACTATATGGCCTTAACTATGAGGGCAGTTTTTCC TTGTCAAAGAATTTCACACTTCCTCAACAGCTTGATTTTAATAATCCAAATGACTAAAAGGATTTTAGAACATTAAAAGA TATCTTATAATATCTTGATCGTATTTTAGAGTAATTTAAATTATTTATCAGGATTTTTTTATCTCCTAATTTATATGTCT ATGTTACCTTATTTAATTAGGATTAGGAGTCTACCATTAGTATAAATAAAGGCAACTGCTTTGCCTTTTGTAAGATCACA CTCAATATAGTTTATTGATACAACTTTATTTTCCGTATTCCCTTAAACTCTTTCTTTACATTGAAGACTAAACCTTATAA TTTCACCCTCTTTCTATACCTTAAAAGACTAAGCCCTGTAATTTCTTAATTTATATAGGGGGCTGTACGTACATGATATA TGTGCAGGTACGAACTAGGTGCTCATAAAATGGGGCACACATCCTTTGAAGAGTACAAATTTCCATAATAATTTAGTATT CAAGTGTTATATCCCCCTCCCCGGCCCTAAATTTTTATACTGCATCTTTCAAATAGGCATCGTTAATTTTGCTCATTGTA TTCCCCCTTTCCCAAATTTTATGGCCGTCTTTGCATGTGAATATCCCATTACCCTTGATGATATCTGATGTCATGTTACG GAACAAATCTTGTTTGAATGGATATTACATTGTGGTATGACTGTAATGTCCTCACAAATAAGGATTTTTATATTCAGCAA CTTTGATGCTGTGACCGAGTTTATTTGTACAGGTCAGCTTCCCTGAATAGGATAGTTCTAATTATGCGCTAAAACTTTAT ATTTATTTGACACATAATGTAATTTACAATGTTGACTTGCTAAAGCCGTCCTGTTTCTGTTGGGAAACAGTTTAAAGGAA TCTTCGTTGATGTAAGAGAATAGTGATATTTTATTATTGTTATGGCTGCAGGTATTCTTTCACAAAGGCTTTCTGCATAG CTTTTGTGATGACTTTCTTTTCTGTATTTGATGTTCCTGTCTTCTGGCCAATATTGCTCTGTTACTGGATCGTTCTGTTT GTCCTAACAATGAGGCGCCAAATTGCACACATGATCAAATACAAATATATTCCATTGAACCTTGGAAAGCAGGTATTCTT ATGCTTAATTTTCCTTTCATCATATTTGTTTGTACACCAAGTCCTGAAGAAGCAAAGTTTGATTTATTTTGTGTTATTCG CATGGAAGATAACAGTATTAATGTATTATTGTTTTAATATGTTACAGAAGTACGGTGGCAAGAAATCTTCTGCAAGTAGC AGCGGCTCTCGTGCAGACTAA
CDS sequence (LotjaGi3g1v0509600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGGAACTGGAGGCAGCAGTGCCTCTGCTGCTGCACCCGTGAACCAATGGTGGCTGGAATTTTCAAAGATGTTCCA GTATTATCTCGATAAATCTACCCCGCACACTACGTATAGATGGATTGGGACCGTGGTTATCGCCTCGATCTATGTTTTGA GGGTTTTTTATGTCCAGGGATTTTACATTGTGTCTTATGGATTGGGAATCTACCTGCTCAACCTCTTGATTGGGTTTCTT TCACCTTTGGTTGATCCTGAGGTCGAGCATTCTGATGGCCCTTTGCTGCCTACTAAAGGCTCCGACGAGTTCAAACCCTT CATTCGCCGCCTTCCTGAGTTTAAGTTCTGGTATTCTTTCACAAAGGCTTTCTGCATAGCTTTTGTGATGACTTTCTTTT CTGTATTTGATGTTCCTGTCTTCTGGCCAATATTGCTCTGTTACTGGATCGTTCTGTTTGTCCTAACAATGAGGCGCCAA ATTGCACACATGATCAAATACAAATATATTCCATTGAACCTTGGAAAGCAGAAGTACGGTGGCAAGAAATCTTCTGCAAG TAGCAGCGGCTCTCGTGCAGACTAA
Protein sequence (LotjaGi3g1v0509600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEGTGGSSASAAAPVNQWWLEFSKMFQYYLDKSTPHTTYRWIGTVVIASIYVLRVFYVQGFYIVSYGLGIYLLNLLIGFL SPLVDPEVEHSDGPLLPTKGSDEFKPFIRRLPEFKFWYSFTKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQ IAHMIKYKYIPLNLGKQKYGGKKSSASSSGSRAD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 1 | 190 | 190 | 6.8E-87 | ||
| Phobius | 1 | 37 | 37 | - | – | |
| PANTHER | 6 | 191 | 186 | 1.0E-139 | ||
| Pfam | 21 | 180 | 160 | 1.9E-73 | ||
| Phobius | 38 | 57 | 20 | - | – | |
| TMHMM | 38 | 57 | 20 | - | – | |
| Phobius | 58 | 62 | 5 | - | – | |
| TMHMM | 62 | 84 | 23 | - | – | |
| Phobius | 63 | 84 | 22 | - | – | |
| Phobius | 85 | 115 | 31 | - | – | |
| Phobius | 116 | 134 | 19 | - | – | |
| Phobius | 135 | 139 | 5 | - | – | |
| TMHMM | 138 | 157 | 20 | - | – | |
| Phobius | 140 | 157 | 18 | - | – | |
| Phobius | 158 | 194 | 37 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi3g1v0509600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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