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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0513900 |
| Transcript ID | LotjaGi3g1v0513900.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | SH3 domain-containing protein 1; TAIR: AT4G34660.1 SH3 domain-containing protein; Swiss-Prot: sp|Q8VWF1|SH3P2_ARATH SH3 domain-containing protein 2; TrEMBL-Plants: tr|A0A1J7HPY7|A0A1J7HPY7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0513900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:93113171..93120398) extracted from Lotus japonicus Gifu genome v1.2.
ATTAATCTCGCCTTGTACTTGGGTCCTGAGCAATTCCCCTCAATCTTCAACTTATACACCTATTTGTTTTTTAGTTTTCT TTTACCTCTCGAGAACTCTACCAACTCAAAAGTCTGGTTCTCATACAAAGATTACATTTCTTCCTGCATTGCTATCCGGT ATCCACCACTCCTCCTTGTGGTCATCCATCATTGTTTCTTCATTAGACTCTGGCTCTCCCCCATCAGTAGAGTAAGTCAC ACATATTCCGTTGCAAAGATACTTGTTTTGGTGGTTTAGGTATCCTAATGGACCTTCTTAATTGGGGCTCTTGAATATCT TGTTATTCGTCATGATTATCTTTAGCCATATCATTATTGGTACCACTATTTCTGTTACCACCAGCTACTTCTTCAATTGA ATTTCGCTATCAATTAGAGGTTTATTTTTTTCATCCCTAACATCTTATTGCATCTCCCCCTTTGTACCAAAAAAAATCTT ATTGCAACTCCCCCATAATGCTTTAGAAGAAGAGCTAGGTCTAGGTCCAAGTTGACCGGAGAGTAAGGCCTCGTTTGGAA GAGTTTATTTAAGCTTATCTGATAGCATAAGCTCTTATGCTTGTGTTTGAGAGAGCTTATACAAACAGCTTATGGCCTGC CATAAGTTGTTTTGAGCTTATTTTCATAAGTCATTCATGATAGCTTATGAAAAAAAACTTATGCTTATATATTGCTTATT TTCAATTTATATCATAAGCGCTTAATTAAGTTGTGTTTCCAAACGAGGCCTAAATCATGAATGCAGTTTTAGTATTCGCT TTATGGACAAACTCATATTAGAGAAGTATTATCCAACAAGCTAGAAAAATAATCCAACAAGCTAGAAATTGATTATTATG ATTTAAGTTGATAATTTTTGTTGCTGGAAAATTCCTAACAAGTTGAAATAAAAATTCAAGAAACATTTACATCAAGGTGG AACTATCTAAATGATATTTTTTTTACTCACAAAATTTGAATTTGTATCATTTAATGAAATTAAATATGTACTGCTTGAAT TAATCAAGTATTGGTTTGGTTTCTTTTTCCTTTTTTATTTGACTTCAATAATATTTGAATCATGAAATATTTGATCTTAG AAAATATAAATAATATAGAAGTTAATATCATTATTTTTCAGAAGGTGAAAAAATATTATTCGAAATAAACAAGCTTCTCC GCGATGGATTGAAAGCCCAGTGAATGAATGCATAATATAGCGTTGGTTGATGTGAGACTGAAGCGGTTAGATTCAATTCA TTTGAATGGATGCAATCAGAAAGCAAGCTTCCAAGCTTCGTGAACAAGTCGCTCGCCAACAACAGGTTCCGTTCTCCCAG ATCTCGCGTTTTCTCCTTCATTTCTCTTCGTTTTCCTTCAATCTGTTACGCATCTAGAAATTGTTGTTACCGTGAAGATG AATCGCCACTGTGTTGGATCTAATCGAGTTTCGCACTCGCATTGCATAAATCAATATAGAATTGCTTTAATCTGAACTTC AATTTTTAGCTGATTTTGAAATCACCGAGCGATGATGAGTAATTGCGCGTATTTGCAGATTGCAATTTCACTATTTATGT TCATGTGAATTGTAATAGCAGTGATGATCGAGTTTTAGTTGATTTATTTTTATTATGTTCTTGTTTCTGAAATGTTCCTT CGTTTTGATTTGATTTGATTTGATTTGATTGATTCCTGTTTTATCAAGGCGTTGATGAATTTTTTTGAATGATTGCTGTT TAGGCTGTGCTGAAGCAGTTTGGGGGTGGCGGTTATGGAGGTTCGGATAATGTGGTTACCGATGAGAGAGAGCTACACTT ACACCAGAAACTCGAGAAACTTTACATTTCGACGCGGGCGGGGAAGGTTAATTGCTTCTTCAATGCTTATCCTTTGTGTT TTATTTATATTTCATTTAAATTAATCTACTCACTGAGGCTGATAGATAATGGTACCTGTTGTGTTTTCAGCATTATCAAA GGGATATTGTGCGCGGTGTAGAAGGTTATATTGTTACGGGGTCGAAGCAAGTTGAAATAGGTAAGTGATAGTAGTTAGTT AAAGCTTTTATGGAAGTTTATTGTATTTTGGTTTGCGTTAAATATTGTTATTGAGTTCCTGTATTTTATTATTCAACAGG AACAAAGTTTTCAGAAGATAGCAGGAAATATGGTGCGGAAAATACATGTACCAGTGGTAGTACATTGAGCAGAGCTGCAC TGAGTTATGCACGAGCCCGTGCCCAAATGGAGAAGGAGCGCGGAAACTTACTAAAAGCTCTCGGTACACAGGTACTAGAT ACGTGTTCGATATGTTTTTTTAGTGTGTTTAGTGTTTTGTTTTGTATGAGTCCATCAAGCTGCTAGTAATTTAAGGGGTT GTTTGATTCAAATGAAGGAAGGGTAAGGGAGGGGAGGGATTTTAAATCTTATCATGTCTGGTTAAGAGGAGGGGAGGGAA GGGTTTTAGATGTATAACTTGTATATTATGAATCAGTAGTTTGTACAATTACATGGATGAACTTATATAATAGTTCATGA ACACTAGAGGGGCTGGGAACTAAGCTGAACCATAACCGATTCTGCTATTCAGTAAAAAGTAACTATACTACTAACTAACT TTCCCTTTTAACAAACTAACAATTTGACTAGTATAGGTAATACTCCCCCTTAATATGTTGAGAAAATGTTTTTGATCCCC ATCTTGGATAAGAGTAATCTAAAAGTAGGCAATGGCAATGCCTTAGTCAATATGTCTGCTAGTTGCTGTTGTGTCCTAAC ATGAACAAGCCGAATCAAACCCTCATTAACCTTCTCACGAACAAAGTGACAATCAAGCTCGATATGCTTTGTGCTTTCAT GGAATGTGGGGTTTGAAACAATGTGTCTTGCTGCCTGGTTATCACAGTAGACAGCAGTGGAACCAGTTTGAATCTGAAAA TCCTGGAGTAAATAATGTAGCCATGTGAGCTCTGAAGTTACAGCTGCCAAGGCACGATATTCAGATTCTGCAGAAGATTT ACTAACTGTTATTTGTTTCTTGGACCTCCAAGAGATAGGAAGGAGAGTCACCAAGGAAGATACAGTAATCTGTTGTAGAA CTTCTAGTATCAACACATGTTGCCCTTATGGTACCTCAAAAGGTAATGCACTGCCTCTAAATGTGGGTTCGAGGCTGTGG CAAGTATTGGCTCAATTTGTGGACAGTAAAAGCAATATCTGGCCGAGAGAGAGTGAGATAGAGCAACCTGCCAACCAACC TTCTGTATAAGCTGTTGTCAGGGAGCAAATCTCTGTCAGAAATGTTCAATTTAAGCTGAGGTTGCATAGGAAGAGTTGTA GGTTGAGAACCTAGAATACTAGTGTCTTCCAAAAGAGATAGAGTATACTTTCTTTGGGAAAGAAAAATCCCAGCCTGTGT TCTTGCAATTTCCAGACCAAGAAAATAATGTAGAGTGCCCAAGTCTTTCAGCTTGAAATGATCTTGCAATTCTGATTTGA GGGAAGAAAGTAGTTGTTGATTTACACAAGCTACGAGTCTATGATGATATCATCAACATAGACTAGTAATGCTACAAAAG CAGCTCATGTATTCTTTGTAGAAAGTGATTAGTCTGCCTTGGATTGTTTGAATCCCAATTTTACAGAATTGTAGCAAACT TGCTGAACCACCGTCTTGAGGCCTGCTTTAACCCATAGATAGACTTCTGAGTTTGCAAACCTTTCTATGATTTCCTTTTG TCTCCCCCTGAACATGATAACCAAGAGGTAGATCCATGTAAATTTCCTCAAGTAATTCACCATTCAAAAATACATTGTTG ATGTCTTGCTAAAGACCACCCTTTGATTGCTGCCAAAGATAATAGGAGTCTCACTGTTGTAAGCTTTGCCATTGGTGAGA ATGTTTCAAAGTATAGACGAGCTTGTTGAGTGTACCCTTTAGCTACTAAGCGTGCCTTATGCCTCTCAATTGTGCCATCA GAATTGAATTTGCTTTTATAGACCCTTTGCAACCTATTGAATGTTTCTGTAAAAACTAACTATACTAACTAACTTTCACT CTTAGCAAACTAACAACTTGACTAGTATAGGTAATAAAGGGAGGGGGAATAACCCCTTTCTTGTTTGGTTTAGGAGGGGA GGGGAGGGATTTTTAAACCTATTTACTTTTATTGCCTTACTTCTTTTGATAAAGTAAACTTATGGAAGGACCTTTTTGTC CATGGAAATATTTCCCCTCAAATGCCCCCCACTTGGTCCCCTCCATTCCCCTGCCATCCCCTCCTAAAAATTGAATCAAA CAAGATAAGTTTAAAAAAATCCATCTCCTCCTCTCCATTCCCCTCCAACCAAACACTATGTTAAGGTTGCAGGGTTGAAA TCTGACTCACACAAGTAATGATGGGGATTTTCCGAATACTGAACTGTTTTACTAAACATGAAAGGGATTTAGAGATAAAT CTATTAATCTACTGAAAATTGAATGTGTGAAGCCAGGCCCTAGTCCAATGTTTTTTTGAAAGTCTAGTCCAATGTTAAAT TGAACTTAATAGCCATTCTTGTACATATATCAAGTTCATCTATCTCATACTTGGAAATAAAATATATGCTCCATGCTGAT AGGTTGCAGAGCCCTTAAGGGCAATGGTGGTGGGAGCTCCATTGGAGGATGCCCGACATCTTGCTCAACGTTACGATAGA ATGCGACAGGAAGCTGAAGCCCAGGTTTTCTGGAATTTATCTTTCATTTCATTTTCCATATGTCACCCAATTTTTGTAGT CTTTGTCTTCTTCATTTCAATAGGTTTAATTAATGATTTTATTGTCTTATCTTGACTTGTAATTACTCTGTCATTTGAAC CTAGACAGGCTATTGAAGTTTCTAAACGCCAGGCAAAAGTAAGAGAAATGCCAGGCAATGCAGAGAATGCTATGAAATTA GAAGCAGCTGAAGCAAAGCTACAAGACCTGAAGACAAACATGAACATATTGGGGAAGGAAGCAGCGGCAGCATTGTCTGC TGTTGAAGCACAGCAACAAAGATTAACTCTTCAGCGCCTTATAGCTATGGTATTGCAGCCTTTCCTTATGATTCTGCAAC TCTTCAATTTAATGGAATCTTGGACCTAAGTAGTAATAAATCATAACTTTTACTTAATCCTGCATTTTATTTCCTACTTA TGAAGGTTGAGGCGGAGCGTGCCTATCATCAGATAGTCTTACAAATTCTTGATCAGCTTGAGGGAGAGGTAAGCACCCAT ATCACTTGATCATTTAACCATTATATTCATCATAGAGAAGTAAAATATGCCAGCTGGAAGATGGGTAATTTTCTTTTGTT ATAAACACATGATTTTGTGCTTTGTGTATTGATAGATGATATCAGAACGACAGCGAATTGAAGCCCCTCCTACTCCTAGT GTGGATCACAGCATGCCGCCGCCCCCATCATATGAAGAAGTGAATGATGTCTTTGCTTCTCAGGCACATAATGGAACAAC AGATAGCATGGGTTACTTCTTAGGAGAGGTTTTTAAGAGATTCTTTCTTATACACAGTGTTACACAGGCAGACATTTAAA ATTATATAACAAGTGTCTGCTTTCTCCTTTTGTAACTTCTACTCTTCTTGCAGGTTTTATTTCCATACTCTGCTGTGTCT GAAGTGGAGTTGAATCTATCAGTTGGTGATTATGTTGTTGTACGAAAGGTTCATAACTTACTGAACTTAACTATAACTTT AGCTGTCTTTGGTCCCCCTTCCCCCAAAACCACCACCTTCTCTCTCTCTGGTTGGGAAGGGTGCTTCTTATGGATTACTT TGTATTTTCAACCCATCATTTTACCAACTATTTGGTATGAGGGAAATAAAGGGGAGAGGGGTTTTGATAAAAAGCTCTTG CATGGTTTTAGAGGTTCTGAGGGGAGGGAAGGGAAATGTGAGAGTAAAATATCTTTCATTATACTTTTTTTAATTTCAAA ACGGTCCTTATATGACACACACACACACACACACTTCTAAAAGGACAAAATAATAAACTTGGTTTTCCCTACCCTTCTTT TACACCAAACAAGTTATTTTCCCTCCTCTCCCCTTTAACCAAATTACCAAACCAAAAAGGAGTCTTCCTTTTCCCTTCCC TTCACATCCCCACCTCTCATTTTGACCAAACCGTCTCTTAGGGTAACAAATCAATACAATTTCAAAACTGATACTGGAAT AATCTAGACCAACTATTATTTAGTACTGAAGACCTTATCCTATCAAAGCTTAAACCTAGGATACAATGGTAACCTGATAT GAAGTCAGAACATTACTTTACTTAAGTTCTCACTGATTCAACATTGAATGATTTTTGGTGGTGAATCTATTCATTATGTG GCATATGTATTCCCATTCAAACTGTTGCTGCGGACATGATAGTGGCTAGCTTTTTATTTTTGGTCCACATACTATTAGCT AGCATGAAATCTTTGTTTTTCAAGCTGGTCTGATTTTCGTACGGCCCCAATACGATTGTTGTGGTTTTTACAGGTGTCAA ACAGCGGATGGGCCGAGGGTGAATGCAAAGGGAGAGCAGGTTGGTTTCCATTTAGTTACATTGAAAGAAGGGAGCGGGTT CTGGCAAGCAAGGTGGCCGAAGTGTTTTGAACTTTTTGTTCGGTTGGGTTGGTTTATAAACCTAGGGATTTTGTATGTGT GTATGTTGTGGTTTTGTAAATCAATTTGATTTGTGAATTGTGATATAGGTGCCAACTTTTTCATTGTTTTTATCAATTAT ATTTTTCAAACATGAATATGAATGCTTTACTCACAATATCTACATATTTTGTTGCATTCAACCTGTTTCCCTCCGAACAT TTTTCTCCCCTTGTCACTTATTTTTAAATCATTGTGTAGTTTAATTAACTTCTATTTTTCAAAATCCGCTTTCAATTTAT AGCCATGGCTTAAATTTTACCTTGTTTTTTCATCCGGGGCAGGGTGTTAGGGGTGGGGATTGAGGATGCAAGTACTCATT CTGCTACATGTCCCGGAGTTATTCCATTGGATTGTCCGTCAAAGAACAAAACTCGCTTTTTGTTTTGTCAAACAGTAACT TAAAAAAGGGATATATATTGGATTGTACTGGAATAATTTTGGAAAAAAATGACTGAATATAATACATTTGCGTTGTTATT GTATTACAAGGTCTAATGCATATTAAAC
CDS sequence (LotjaGi3g1v0513900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGCAATCAGAAAGCAAGCTTCCAAGCTTCGTGAACAAGTCGCTCGCCAACAACAGGCTGTGCTGAAGCAGTTTGG GGGTGGCGGTTATGGAGGTTCGGATAATGTGGTTACCGATGAGAGAGAGCTACACTTACACCAGAAACTCGAGAAACTTT ACATTTCGACGCGGGCGGGGAAGCATTATCAAAGGGATATTGTGCGCGGTGTAGAAGGTTATATTGTTACGGGGTCGAAG CAAGTTGAAATAGGAACAAAGTTTTCAGAAGATAGCAGGAAATATGGTGCGGAAAATACATGTACCAGTGGTAGTACATT GAGCAGAGCTGCACTGAGTTATGCACGAGCCCGTGCCCAAATGGAGAAGGAGCGCGGAAACTTACTAAAAGCTCTCGGTA CACAGGTTGCAGAGCCCTTAAGGGCAATGGTGGTGGGAGCTCCATTGGAGGATGCCCGACATCTTGCTCAACGTTACGAT AGAATGCGACAGGAAGCTGAAGCCCAGGCTATTGAAGTTTCTAAACGCCAGGCAAAAGTAAGAGAAATGCCAGGCAATGC AGAGAATGCTATGAAATTAGAAGCAGCTGAAGCAAAGCTACAAGACCTGAAGACAAACATGAACATATTGGGGAAGGAAG CAGCGGCAGCATTGTCTGCTGTTGAAGCACAGCAACAAAGATTAACTCTTCAGCGCCTTATAGCTATGGTTGAGGCGGAG CGTGCCTATCATCAGATAGTCTTACAAATTCTTGATCAGCTTGAGGGAGAGATGATATCAGAACGACAGCGAATTGAAGC CCCTCCTACTCCTAGTGTGGATCACAGCATGCCGCCGCCCCCATCATATGAAGAAGTGAATGATGTCTTTGCTTCTCAGG CACATAATGGAACAACAGATAGCATGGGTTACTTCTTAGGAGAGGTTTTATTTCCATACTCTGCTGTGTCTGAAGTGGAG TTGAATCTATCAGTTGGTGATTATGTTGTTGTACGAAAGGTGTCAAACAGCGGATGGGCCGAGGGTGAATGCAAAGGGAG AGCAGGTTGGTTTCCATTTAGTTACATTGAAAGAAGGGAGCGGGTTCTGGCAAGCAAGGTGGCCGAAGTGTTTTGA
Protein sequence (LotjaGi3g1v0513900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDAIRKQASKLREQVARQQQAVLKQFGGGGYGGSDNVVTDERELHLHQKLEKLYISTRAGKHYQRDIVRGVEGYIVTGSK QVEIGTKFSEDSRKYGAENTCTSGSTLSRAALSYARARAQMEKERGNLLKALGTQVAEPLRAMVVGAPLEDARHLAQRYD RMRQEAEAQAIEVSKRQAKVREMPGNAENAMKLEAAEAKLQDLKTNMNILGKEAAAALSAVEAQQQRLTLQRLIAMVEAE RAYHQIVLQILDQLEGEMISERQRIEAPPTPSVDHSMPPPPSYEEVNDVFASQAHNGTTDSMGYFLGEVLFPYSAVSEVE LNLSVGDYVVVRKVSNSGWAEGECKGRAGWFPFSYIERRERVLASKVAEVF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Coils | 1 | 21 | 21 | - | – | |
| PANTHER | 4 | 371 | 368 | 5.1E-244 | – | |
| PANTHER | 4 | 371 | 368 | 5.1E-244 | – | |
| Gene3D | 44 | 271 | 228 | 4.8E-12 | ||
| SUPERFAMILY | 45 | 258 | 214 | 1.67E-23 | ||
| Coils | 149 | 176 | 28 | - | – | |
| Coils | 186 | 213 | 28 | - | – | |
| Coils | 220 | 240 | 21 | - | – | |
| SUPERFAMILY | 265 | 359 | 95 | 8.53E-16 | ||
| Gene3D | 292 | 369 | 78 | 5.8E-15 | – | |
| ProSiteProfiles | 302 | 361 | 60 | 19.613 | ||
| SMART | 305 | 360 | 56 | 8.7E-13 | ||
| Pfam | 309 | 357 | 49 | 9.8E-12 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0513900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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