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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0513900 |
| Transcript ID | LotjaGi3g1v0513900.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | SH3 domain-containing protein 1; TAIR: AT4G34660.1 SH3 domain-containing protein; Swiss-Prot: sp|Q8VWF1|SH3P2_ARATH SH3 domain-containing protein 2; TrEMBL-Plants: tr|A0A1J7HPY7|A0A1J7HPY7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0513900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:93113729..93118873) extracted from Lotus japonicus Gifu genome v1.2.
TTAGCTGATTTTGAAATCACCGAGCGATGATGAGTAATTGCGCGTATTTGCAGATTGCAATTTCACTATTTATGTTCATG TGAATTGTAATAGCAGTGATGATCGAGTTTTAGTTGATTTATTTTTATTATGTTCTTGTTTCTGAAATGTTCCTTCGTTT TGATTTGATTTGATTTGATTTGATTGATTCCTGTTTTATCAAGGCGTTGATGAATTTTTTTGAATGATTGCTGTTTAGGC TGTGCTGAAGCAGTTTGGGGGTGGCGGTTATGGAGGTTCGGATAATGTGGTTACCGATGAGAGAGAGCTACACTTACACC AGAAACTCGAGAAACTTTACATTTCGACGCGGGCGGGGAAGGTTAATTGCTTCTTCAATGCTTATCCTTTGTGTTTTATT TATATTTCATTTAAATTAATCTACTCACTGAGGCTGATAGATAATGGTACCTGTTGTGTTTTCAGCATTATCAAAGGGAT ATTGTGCGCGGTGTAGAAGGTTATATTGTTACGGGGTCGAAGCAAGTTGAAATAGGTAAGTGATAGTAGTTAGTTAAAGC TTTTATGGAAGTTTATTGTATTTTGGTTTGCGTTAAATATTGTTATTGAGTTCCTGTATTTTATTATTCAACAGGAACAA AGTTTTCAGAAGATAGCAGGAAATATGGTGCGGAAAATACATGTACCAGTGGTAGTACATTGAGCAGAGCTGCACTGAGT TATGCACGAGCCCGTGCCCAAATGGAGAAGGAGCGCGGAAACTTACTAAAAGCTCTCGGTACACAGGTACTAGATACGTG TTCGATATGTTTTTTTAGTGTGTTTAGTGTTTTGTTTTGTATGAGTCCATCAAGCTGCTAGTAATTTAAGGGGTTGTTTG ATTCAAATGAAGGAAGGGTAAGGGAGGGGAGGGATTTTAAATCTTATCATGTCTGGTTAAGAGGAGGGGAGGGAAGGGTT TTAGATGTATAACTTGTATATTATGAATCAGTAGTTTGTACAATTACATGGATGAACTTATATAATAGTTCATGAACACT AGAGGGGCTGGGAACTAAGCTGAACCATAACCGATTCTGCTATTCAGTAAAAAGTAACTATACTACTAACTAACTTTCCC TTTTAACAAACTAACAATTTGACTAGTATAGGTAATACTCCCCCTTAATATGTTGAGAAAATGTTTTTGATCCCCATCTT GGATAAGAGTAATCTAAAAGTAGGCAATGGCAATGCCTTAGTCAATATGTCTGCTAGTTGCTGTTGTGTCCTAACATGAA CAAGCCGAATCAAACCCTCATTAACCTTCTCACGAACAAAGTGACAATCAAGCTCGATATGCTTTGTGCTTTCATGGAAT GTGGGGTTTGAAACAATGTGTCTTGCTGCCTGGTTATCACAGTAGACAGCAGTGGAACCAGTTTGAATCTGAAAATCCTG GAGTAAATAATGTAGCCATGTGAGCTCTGAAGTTACAGCTGCCAAGGCACGATATTCAGATTCTGCAGAAGATTTACTAA CTGTTATTTGTTTCTTGGACCTCCAAGAGATAGGAAGGAGAGTCACCAAGGAAGATACAGTAATCTGTTGTAGAACTTCT AGTATCAACACATGTTGCCCTTATGGTACCTCAAAAGGTAATGCACTGCCTCTAAATGTGGGTTCGAGGCTGTGGCAAGT ATTGGCTCAATTTGTGGACAGTAAAAGCAATATCTGGCCGAGAGAGAGTGAGATAGAGCAACCTGCCAACCAACCTTCTG TATAAGCTGTTGTCAGGGAGCAAATCTCTGTCAGAAATGTTCAATTTAAGCTGAGGTTGCATAGGAAGAGTTGTAGGTTG AGAACCTAGAATACTAGTGTCTTCCAAAAGAGATAGAGTATACTTTCTTTGGGAAAGAAAAATCCCAGCCTGTGTTCTTG CAATTTCCAGACCAAGAAAATAATGTAGAGTGCCCAAGTCTTTCAGCTTGAAATGATCTTGCAATTCTGATTTGAGGGAA GAAAGTAGTTGTTGATTTACACAAGCTACGAGTCTATGATGATATCATCAACATAGACTAGTAATGCTACAAAAGCAGCT CATGTATTCTTTGTAGAAAGTGATTAGTCTGCCTTGGATTGTTTGAATCCCAATTTTACAGAATTGTAGCAAACTTGCTG AACCACCGTCTTGAGGCCTGCTTTAACCCATAGATAGACTTCTGAGTTTGCAAACCTTTCTATGATTTCCTTTTGTCTCC CCCTGAACATGATAACCAAGAGGTAGATCCATGTAAATTTCCTCAAGTAATTCACCATTCAAAAATACATTGTTGATGTC TTGCTAAAGACCACCCTTTGATTGCTGCCAAAGATAATAGGAGTCTCACTGTTGTAAGCTTTGCCATTGGTGAGAATGTT TCAAAGTATAGACGAGCTTGTTGAGTGTACCCTTTAGCTACTAAGCGTGCCTTATGCCTCTCAATTGTGCCATCAGAATT GAATTTGCTTTTATAGACCCTTTGCAACCTATTGAATGTTTCTGTAAAAACTAACTATACTAACTAACTTTCACTCTTAG CAAACTAACAACTTGACTAGTATAGGTAATAAAGGGAGGGGGAATAACCCCTTTCTTGTTTGGTTTAGGAGGGGAGGGGA GGGATTTTTAAACCTATTTACTTTTATTGCCTTACTTCTTTTGATAAAGTAAACTTATGGAAGGACCTTTTTGTCCATGG AAATATTTCCCCTCAAATGCCCCCCACTTGGTCCCCTCCATTCCCCTGCCATCCCCTCCTAAAAATTGAATCAAACAAGA TAAGTTTAAAAAAATCCATCTCCTCCTCTCCATTCCCCTCCAACCAAACACTATGTTAAGGTTGCAGGGTTGAAATCTGA CTCACACAAGTAATGATGGGGATTTTCCGAATACTGAACTGTTTTACTAAACATGAAAGGGATTTAGAGATAAATCTATT AATCTACTGAAAATTGAATGTGTGAAGCCAGGCCCTAGTCCAATGTTTTTTTGAAAGTCTAGTCCAATGTTAAATTGAAC TTAATAGCCATTCTTGTACATATATCAAGTTCATCTATCTCATACTTGGAAATAAAATATATGCTCCATGCTGATAGGTT GCAGAGCCCTTAAGGGCAATGGTGGTGGGAGCTCCATTGGAGGATGCCCGACATCTTGCTCAACGTTACGATAGAATGCG ACAGGAAGCTGAAGCCCAGGTTTTCTGGAATTTATCTTTCATTTCATTTTCCATATGTCACCCAATTTTTGTAGTCTTTG TCTTCTTCATTTCAATAGGTTTAATTAATGATTTTATTGTCTTATCTTGACTTGTAATTACTCTGTCATTTGAACCTAGA CAGGCTATTGAAGTTTCTAAACGCCAGGCAAAAGTAAGAGAAATGCCAGGCAATGCAGAGAATGCTATGAAATTAGAAGC AGCTGAAGCAAAGCTACAAGACCTGAAGACAAACATGAACATATTGGGGAAGGAAGCAGCGGCAGCATTGTCTGCTGTTG AAGCACAGCAACAAAGATTAACTCTTCAGCGCCTTATAGCTATGGTATTGCAGCCTTTCCTTATGATTCTGCAACTCTTC AATTTAATGGAATCTTGGACCTAAGTAGTAATAAATCATAACTTTTACTTAATCCTGCATTTTATTTCCTACTTATGAAG GTTGAGGCGGAGCGTGCCTATCATCAGATAGTCTTACAAATTCTTGATCAGCTTGAGGGAGAGGTAAGCACCCATATCAC TTGATCATTTAACCATTATATTCATCATAGAGAAGTAAAATATGCCAGCTGGAAGATGGGTAATTTTCTTTTGTTATAAA CACATGATTTTGTGCTTTGTGTATTGATAGATGATATCAGAACGACAGCGAATTGAAGCCCCTCCTACTCCTAGTGTGGA TCACAGCATGCCGCCGCCCCCATCATATGAAGAAGTGAATGATGTCTTTGCTTCTCAGGCACATAATGGAACAACAGATA GCATGGGTTACTTCTTAGGAGAGGTTTTTAAGAGATTCTTTCTTATACACAGTGTTACACAGGCAGACATTTAAAATTAT ATAACAAGTGTCTGCTTTCTCCTTTTGTAACTTCTACTCTTCTTGCAGGTTTTATTTCCATACTCTGCTGTGTCTGAAGT GGAGTTGAATCTATCAGTTGGTGATTATGTTGTTGTACGAAAGGTTCATAACTTACTGAACTTAACTATAACTTTAGCTG TCTTTGGTCCCCCTTCCCCCAAAACCACCACCTTCTCTCTCTCTGGTTGGGAAGGGTGCTTCTTATGGATTACTTTGTAT TTTCAACCCATCATTTTACCAACTATTTGGTATGAGGGAAATAAAGGGGAGAGGGGTTTTGATAAAAAGCTCTTGCATGG TTTTAGAGGTTCTGAGGGGAGGGAAGGGAAATGTGAGAGTAAAATATCTTTCATTATACTTTTTTTAATTTCAAAACGGT CCTTATATGACACACACACACACACACACTTCTAAAAGGACAAAATAATAAACTTGGTTTTCCCTACCCTTCTTTTACAC CAAACAAGTTATTTTCCCTCCTCTCCCCTTTAACCAAATTACCAAACCAAAAAGGAGTCTTCCTTTTCCCTTCCCTTCAC ATCCCCACCTCTCATTTTGACCAAACCGTCTCTTAGGGTAACAAATCAATACAATTTCAAAACTGATACTGGAATAATCT AGACCAACTATTATTTAGTACTGAAGACCTTATCCTATCAAAGCTTAAACCTAGGATACAATGGTAACCTGATATGAAGT CAGAACATTACTTTACTTAAGTTCTCACTGATTCAACATTGAATGATTTTTGGTGGTGAATCTATTCATTATGTGGCATA TGTATTCCCATTCAAACTGTTGCTGCGGACATGATAGTGGCTAGCTTTTTATTTTTGGTCCACATACTATTAGCTAGCAT GAAATCTTTGTTTTTCAAGCTGGTCTGATTTTCGTACGGCCCCAATACGATTGTTGTGGTTTTTACAGGTGTCAAACAGC GGATGGGCCGAGGGTGAATGCAAAGGGAGAGCAGGTTGGTTTCCATTTAGTTACATTGAAAGAAGGGAGCGGGTTCTGGC AAGCAAGGTGGCCGAAGTGTTTTGA
CDS sequence (LotjaGi3g1v0513900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGAGTAATTGCGCGTATTTGCAGATTGCTGTGCTGAAGCAGTTTGGGGGTGGCGGTTATGGAGGTTCGGATAATGT GGTTACCGATGAGAGAGAGCTACACTTACACCAGAAACTCGAGAAACTTTACATTTCGACGCGGGCGGGGAAGCATTATC AAAGGGATATTGTGCGCGGTGTAGAAGGTTATATTGTTACGGGGTCGAAGCAAGTTGAAATAGGAACAAAGTTTTCAGAA GATAGCAGGAAATATGGTGCGGAAAATACATGTACCAGTGGTAGTACATTGAGCAGAGCTGCACTGAGTTATGCACGAGC CCGTGCCCAAATGGAGAAGGAGCGCGGAAACTTACTAAAAGCTCTCGGTACACAGGTTGCAGAGCCCTTAAGGGCAATGG TGGTGGGAGCTCCATTGGAGGATGCCCGACATCTTGCTCAACGTTACGATAGAATGCGACAGGAAGCTGAAGCCCAGGCT ATTGAAGTTTCTAAACGCCAGGCAAAAGTAAGAGAAATGCCAGGCAATGCAGAGAATGCTATGAAATTAGAAGCAGCTGA AGCAAAGCTACAAGACCTGAAGACAAACATGAACATATTGGGGAAGGAAGCAGCGGCAGCATTGTCTGCTGTTGAAGCAC AGCAACAAAGATTAACTCTTCAGCGCCTTATAGCTATGGTTGAGGCGGAGCGTGCCTATCATCAGATAGTCTTACAAATT CTTGATCAGCTTGAGGGAGAGATGATATCAGAACGACAGCGAATTGAAGCCCCTCCTACTCCTAGTGTGGATCACAGCAT GCCGCCGCCCCCATCATATGAAGAAGTGAATGATGTCTTTGCTTCTCAGGCACATAATGGAACAACAGATAGCATGGGTT ACTTCTTAGGAGAGGTTTTATTTCCATACTCTGCTGTGTCTGAAGTGGAGTTGAATCTATCAGTTGGTGATTATGTTGTT GTACGAAAGGTGTCAAACAGCGGATGGGCCGAGGGTGAATGCAAAGGGAGAGCAGGTTGGTTTCCATTTAGTTACATTGA AAGAAGGGAGCGGGTTCTGGCAAGCAAGGTGGCCGAAGTGTTTTGA
Protein sequence (LotjaGi3g1v0513900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMSNCAYLQIAVLKQFGGGGYGGSDNVVTDERELHLHQKLEKLYISTRAGKHYQRDIVRGVEGYIVTGSKQVEIGTKFSE DSRKYGAENTCTSGSTLSRAALSYARARAQMEKERGNLLKALGTQVAEPLRAMVVGAPLEDARHLAQRYDRMRQEAEAQA IEVSKRQAKVREMPGNAENAMKLEAAEAKLQDLKTNMNILGKEAAAALSAVEAQQQRLTLQRLIAMVEAERAYHQIVLQI LDQLEGEMISERQRIEAPPTPSVDHSMPPPPSYEEVNDVFASQAHNGTTDSMGYFLGEVLFPYSAVSEVELNLSVGDYVV VRKVSNSGWAEGECKGRAGWFPFSYIERRERVLASKVAEVF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 5 | 361 | 357 | 3.0E-234 | – | |
| PANTHER | 5 | 361 | 357 | 3.0E-234 | – | |
| Gene3D | 34 | 261 | 228 | 4.5E-12 | ||
| SUPERFAMILY | 35 | 248 | 214 | 1.55E-23 | ||
| Coils | 139 | 166 | 28 | - | – | |
| Coils | 176 | 203 | 28 | - | – | |
| Coils | 210 | 230 | 21 | - | – | |
| SUPERFAMILY | 255 | 349 | 95 | 8.01E-16 | ||
| Gene3D | 282 | 359 | 78 | 5.5E-15 | – | |
| ProSiteProfiles | 292 | 351 | 60 | 19.613 | ||
| SMART | 295 | 350 | 56 | 8.7E-13 | ||
| Pfam | 299 | 347 | 49 | 9.4E-12 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0513900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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