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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0514000 |
| Transcript ID | LotjaGi3g1v0514000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | GATA transcription factor; TAIR: AT3G51080.1 GATA transcription factor 6; Swiss-Prot: sp|Q9SD38|GATA6_ARATH GATA transcription factor 6; TrEMBL-Plants: tr|A0A151RII0|A0A151RII0_CAJCA GATA transcription factor; Found in the gene: LotjaGi3g1v0514000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:93123797..93126072) extracted from Lotus japonicus Gifu genome v1.2.
CTAGTAGTCGCATATTTAAATTCAAAACAGGTACAATTTGTAATAAAATACAAAGATAATTATAAACCAATACCTCAACG CTTGTTTCGCCCACGAACCTGTTTATCTGCTTCCAAACCAAACGAAACTCCTCTGCGGTTTCCATTCTTTGTCTTCTCCA CTTTCAATTTTTTTCATCAGGTAAAACAAAATAATTAAATCCATATAGCAACGAAAACATTAATTTTACGACTGTTTGAA ACCCTGTTTTGATATTAATATAGTTTAATTTGCGTGTTGCAGGTAGAAAACCTAGGAAAAAAATGGAAGTTGCGGTGGCG AAAGCGTTGAAACCGAGTCTTCAGACAGAGTTTGTTTTCTCCCAGGAAATTCGCAACGAGATTTTGTGCCTGAACGCAAA CAACGTTGTTGTCGGTGAGGATTTTTCTGTCGATGATTTGCTTGACTTTTCCAATGGAAAAGAAATGGATGATTATGAAG AGGAGGAAGAGGAAGAGGAAGAAGAGAAAGGTAGCACCGTCTCAGGAGGATCACAGGACCGAATAGAAGAAGATAGCAAT TCCAATTCCACCGCCGCCGGTGACTATGACTCCATTTTTGCCGGCGAATTGGCGGTTCCGGTGAGTTCTTTTATTTTTCC TTTTAAATTTTTTTTTTTATTTCATGTAATAATTCAATTCAATAATTCATGACCCATTTTGGGCTTTCACAGGCTGATGA TGTGGCGGGCCTGGAGTGGGTTTCTCACTTTGTCGACGATTCTCTCCCAGAGCTTTCTCTTCTGTATCCTGTCCGGGCCG AGCAAACACGGGCCCGGGCCGAACCGGAAGCTAGACCAGGCTCAGACCGAGCCCCTTTCCCTTTCCGCACCAAGCCGAGA ACTACCAGGACTCGAAAGCCCATTGGTCACGTGTGGTCGTTTAACCCCATGGGGTTTTCCTCGATGGCGCCACCTCTCTC CGGCGAGGGGTTCCGTCAGCCGCCGATGAAGAAGCAGAAGAAAAAGCCCGAAGCCCAGGACCATACAGGTGGGCCTCAGT TTCAGCGAAGGTGCAGCCACTGCCAAGTGCAGAAAACACCCCAGTGGAGGGCCGGCCCGCTGGGCCCGAAAACACTATGC AATGCTTGCGGCGTCCGGTTCAAGTCCGGTCGGCTTTTTCCGGAGTATAGACCGGCCTGTAGCCCAACTTTCTCTGGTGA AATTCACTCTAACAGCCATCGCAAAGTGCTGGAGATGAGGAGAAGGAAGGAGACGGCTGAACCGGTTTCCGGTTTGGATC AGGCTCGAATGGTTCAGAGTTTTTGAAGTAGTTTAGCCTAGACTAGGTTTAGGTGAACTAACCGGTCTAGCCCGGTTCGT TTTTTGTAACATAGTGAATTTACTTTAGTGGTAGTCAGCGAGCTAGGCAGGTAAAACGGACATTAGGAAAAAAGCAGTGA TTTGATTGTTTGTGTCCCATGTTTCCTGGCGCTGTTAATTTATTTGAATGAAGAGAGTTTTTAATGTGAGGCCATCTTGG CCTTCTAAATTCAAGTTGTGGGTACTTTGATATTTTATTTATTTGCTACTCTTTCAAACACATGCAGTTGCTTTCAAACT CAGTTGGTTTTGATTGAATAATTCAACTAAGTTCAGCAGGAGTGTGATTCTGAGTATGAGTGCATGCATATGACTATGAG TGATGGATGTATGTGTAAGAGAGAGAAAGGGAAGGTGCGGTAGGGAGTGATTGAGGCATTAAAGTTGGGTGTGGCATTAA TTTGAGACCACCGAAGCTGTGATAGTGCCAAATGGAGTGGTCATGTGGGATCAGTGGTCATATCTTTGGTAAGCTGTGTT AGACCACCGAAGTTATGTTAGTGTCTCATTTTTTCAACACTCAAACTATATTGACATTTTTTCCCATAACATTAGTACTA GAGTTATTAAGTGAGTTTGGATTTTTATTGAGGTTAATGGGGAACACGTTAGAGTGATCGACGATGGGGTAAATTTTGAT CCAAGTTTAATTTAAGTGACAAATTATGGTTTCTTTGTTGATTTTTTGAGGTAAGTAGAATCATGTCAGGCATCAACCAG TTAACGTAAATCAAATACGCATCTATTATGCTGTTTTTTCTTTAGATTTGTTTGGTTGAGAAGAGAAAGAGATAAGAGAA GAGTGGAGATAAGATAAGTAAAGAAAAAAATGTGAAAAAAAAAAAAGATTTCATAAATTGTTTGGTATGATAAAAAGAGT AGCGAAATAATGTGGTGGCGTAAATTTAAAGAGAGG
CDS sequence (LotjaGi3g1v0514000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGTTGCGGTGGCGAAAGCGTTGAAACCGAGTCTTCAGACAGAGTTTGTTTTCTCCCAGGAAATTCGCAACGAGAT TTTGTGCCTGAACGCAAACAACGTTGTTGTCGGTGAGGATTTTTCTGTCGATGATTTGCTTGACTTTTCCAATGGAAAAG AAATGGATGATTATGAAGAGGAGGAAGAGGAAGAGGAAGAAGAGAAAGGTAGCACCGTCTCAGGAGGATCACAGGACCGA ATAGAAGAAGATAGCAATTCCAATTCCACCGCCGCCGGTGACTATGACTCCATTTTTGCCGGCGAATTGGCGGTTCCGGC TGATGATGTGGCGGGCCTGGAGTGGGTTTCTCACTTTGTCGACGATTCTCTCCCAGAGCTTTCTCTTCTGTATCCTGTCC GGGCCGAGCAAACACGGGCCCGGGCCGAACCGGAAGCTAGACCAGGCTCAGACCGAGCCCCTTTCCCTTTCCGCACCAAG CCGAGAACTACCAGGACTCGAAAGCCCATTGGTCACGTGTGGTCGTTTAACCCCATGGGGTTTTCCTCGATGGCGCCACC TCTCTCCGGCGAGGGGTTCCGTCAGCCGCCGATGAAGAAGCAGAAGAAAAAGCCCGAAGCCCAGGACCATACAGGTGGGC CTCAGTTTCAGCGAAGGTGCAGCCACTGCCAAGTGCAGAAAACACCCCAGTGGAGGGCCGGCCCGCTGGGCCCGAAAACA CTATGCAATGCTTGCGGCGTCCGGTTCAAGTCCGGTCGGCTTTTTCCGGAGTATAGACCGGCCTGTAGCCCAACTTTCTC TGGTGAAATTCACTCTAACAGCCATCGCAAAGTGCTGGAGATGAGGAGAAGGAAGGAGACGGCTGAACCGGTTTCCGGTT TGGATCAGGCTCGAATGGTTCAGAGTTTTTGA
Protein sequence (LotjaGi3g1v0514000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEVAVAKALKPSLQTEFVFSQEIRNEILCLNANNVVVGEDFSVDDLLDFSNGKEMDDYEEEEEEEEEEKGSTVSGGSQDR IEEDSNSNSTAAGDYDSIFAGELAVPADDVAGLEWVSHFVDDSLPELSLLYPVRAEQTRARAEPEARPGSDRAPFPFRTK PRTTRTRKPIGHVWSFNPMGFSSMAPPLSGEGFRQPPMKKQKKKPEAQDHTGGPQFQRRCSHCQVQKTPQWRAGPLGPKT LCNACGVRFKSGRLFPEYRPACSPTFSGEIHSNSHRKVLEMRRRKETAEPVSGLDQARMVQSF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 302 | 302 | 1.3E-144 | – | |
| PANTHER | 1 | 302 | 302 | 1.3E-144 | – | |
| PIRSF | 13 | 302 | 290 | 5.6E-81 | ||
| MobiDBLite | 51 | 93 | 43 | - | – | |
| MobiDBLite | 54 | 69 | 16 | - | – | |
| MobiDBLite | 74 | 93 | 20 | - | – | |
| MobiDBLite | 140 | 164 | 25 | - | – | |
| MobiDBLite | 185 | 220 | 36 | - | – | |
| Gene3D | 214 | 265 | 52 | 3.4E-12 | ||
| ProSiteProfiles | 214 | 250 | 37 | 11.068 | ||
| SMART | 214 | 268 | 55 | 5.5E-14 | ||
| SUPERFAMILY | 217 | 277 | 61 | 6.18E-14 | – | |
| CDD | 219 | 276 | 58 | 2.02813E-15 | ||
| ProSitePatterns | 220 | 245 | 26 | - | ||
| Pfam | 220 | 253 | 34 | 1.6E-16 | ||
| MobiDBLite | 284 | 303 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. | ||
| Biological process | Positive regulation of transcription, DNA-templated | Any process that activates or increases the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi3g1v0514000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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