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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0515300 |
| Transcript ID | LotjaGi3g1v0515300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | V-type proton ATPase proteolipid subunit; TAIR: AT4G34720.2 ATPase, F0/V0 complex, subunit C protein; Swiss-Prot: sp|P0DH92|VATL1_ARATH V-type proton ATPase subunit c1; TrEMBL-Plants: tr|I1LPX0|I1LPX0_SOYBN V-type proton ATPase proteolipid subunit; Found in the gene: LotjaGi3g1v0515300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:93243771..93245059) extracted from Lotus japonicus Gifu genome v1.2.
ATGGAGGAAGGTATGGGAGCGGCGTATGGAACGGCAAAGAGTGGTGTCGGTGTGGCTTCAATGGGAGTGATGAGACCGGA GCTGGTGATGAAGTCGATTGTTCCTGTTGTTATGGCTGGAGTTTTGGGTATTTATGGACTTATTATTGCTGTTATTATCA GTACTGGAATTAACCCTAAGGCCAAATCTTACTACCTCTTTGATGGTTATGCGCATCTCTCCTCTGGTCTTGCCTGCGGG CTTGCTGGGCTCTCTGCCGGCATGGCTATTGGTATTGTTGGTGATGCTGGTGTCAGGTATGATGCTTCTGCCTCAGTGTG TTAGTATATGATGATCTATGATTGAACTTGAAACTGGTTTTTGGATCACCTGTTTTCCCCCCTAATTTACTCTGATTTAT AGAATTTCAATGACACTTGATGTTTGTATGCATTCTATCAGATGCAGTTGCAGAGATTAAGTGTGACTAGGGGGAGCCCA ATTTTTAAACAAAAAGTTACACACGCTCACTTTTTTTTTTGGCGAATTCACACACACACATATATATACACTTATTTATG TAACTATTAAAAATTATTTGTGAAAGTATTGATTATTGAACTTGTAGTATAACTGTATAAGTAGTAATGAAATCTATTTG ATCTACTTAGCAACTAAATTATCCCTCTCCCTTATATTTTGTTAGCTTGAAATACTGTGCTACCATCATCATCAATTACT TAGCCACTAGTCTATGATTATACTTACCGGTTTCATTTTCTCTTATTAATGAAAATGGTATATCAATCACAATATATAAG AATTTGCAATGTAAAATGAGTAATGACCCTCTAATCCTCTCAATTTTTCATTACAAGGTTGAGACAAACCATAACAGTAT TTTAATAATAGATCATATGAGGAATTTTTTTGTCTCACATAAATGTCTTCTTCAAGCTCTGCCACTAATAACATGAACAT AGGTCCCTGAGTTGTTACTGCAGAACTGTTTGCCTTTTGAATCATCAAATAGGGTATTAGTCTTGATGGAACTTATATTT CTGTTACTATGCTGTTTTTGTTGTGAATTTAATACTGAGGTATATCTTTTACAATAATATTAGTATCTAGTGAATTTCTT CCATTGAATAATTAATCATTTAATCTCCCTCTGCAGAGCCAATGCACAGCAGCCAAAACTTTTTGTTGGAATGATTCTTA TCCTCATCTTCGCTGAGGCTCTTGCCTTGTATGGTCTCATCGTCGGTATCATCCTCTCTTCTCGTGCTGGTCAGTCCAGA GCTGAGTAA
CDS sequence (LotjaGi3g1v0515300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGAAGGTATGGGAGCGGCGTATGGAACGGCAAAGAGTGGTGTCGGTGTGGCTTCAATGGGAGTGATGAGACCGGA GCTGGTGATGAAGTCGATTGTTCCTGTTGTTATGGCTGGAGTTTTGGGTATTTATGGACTTATTATTGCTGTTATTATCA GTACTGGAATTAACCCTAAGGCCAAATCTTACTACCTCTTTGATGGTTATGCGCATCTCTCCTCTGGTCTTGCCTGCGGG CTTGCTGGGCTCTCTGCCGGCATGGCTATTGGTATTGTTGGTGATGCTGGTGTCAGAGCCAATGCACAGCAGCCAAAACT TTTTGTTGGAATGATTCTTATCCTCATCTTCGCTGAGGCTCTTGCCTTGTATGGTCTCATCGTCGGTATCATCCTCTCTT CTCGTGCTGGTCAGTCCAGAGCTGAGTAA
Protein sequence (LotjaGi3g1v0515300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEEGMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACG LAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 32 | 32 | - | – | |
| Gene3D | 2 | 139 | 138 | 6.0E-54 | – | |
| PANTHER | 4 | 142 | 139 | 2.5E-90 | – | |
| Pfam | 4 | 53 | 50 | 2.5E-11 | ||
| PANTHER | 4 | 142 | 139 | 2.5E-90 | – | |
| TIGRFAM | 5 | 98 | 94 | 2.5E-44 | ||
| CDD | 5 | 57 | 53 | 7.42751E-23 | – | |
| PRINTS | 7 | 31 | 25 | 8.4E-59 | ||
| Phobius | 33 | 57 | 25 | - | – | |
| PRINTS | 33 | 57 | 25 | 8.4E-59 | ||
| TMHMM | 36 | 58 | 23 | - | – | |
| Phobius | 58 | 68 | 11 | - | – | |
| SUPERFAMILY | 64 | 133 | 70 | 7.85E-20 | ||
| CDD | 66 | 133 | 68 | 1.99212E-31 | – | |
| Phobius | 69 | 92 | 24 | - | – | |
| TMHMM | 71 | 93 | 23 | - | – | |
| Pfam | 74 | 132 | 59 | 2.3E-20 | ||
| PRINTS | 84 | 110 | 27 | 8.4E-59 | ||
| Phobius | 93 | 106 | 14 | - | – | |
| Phobius | 107 | 132 | 26 | - | – | |
| TMHMM | 108 | 130 | 23 | - | – | |
| PRINTS | 111 | 134 | 24 | 8.4E-59 | ||
| Phobius | 133 | 142 | 10 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Proton transmembrane transporter activity | Enables the transfer of a proton from one side of a membrane to the other. | ||
| Cellular component | Proton-transporting two-sector ATPase complex, proton-transporting domain | A protein complex that forms part of a proton-transporting two-sector ATPase complex and carries out proton transport across a membrane. The proton-transporting domain (F0, V0, or A0) includes integral and peripheral membrane proteins. | ||
| Cellular component | Proton-transporting V-type ATPase, V0 domain | A protein complex that forms part of a proton-transporting V-type ATPase and mediates proton transport across a membrane. The V0 complex consists of at least four different subunits (a,c,d and e); six or more c subunits form a proton-binding rotor ring. | ||
| Biological process | Proton transmembrane transport | The directed movement of a proton across a membrane. |
Expression pattern of LotjaGi3g1v0515300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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