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LotjaGi3g1v0521400.1

Overview

Field Value
Gene ID LotjaGi3g1v0521400
Transcript ID LotjaGi3g1v0521400.1
Lotus japonicus genome version Gifu v1.2
Description Myb transcription factor; TAIR: AT4G38620.1 myb domain protein 4; Swiss-Prot: sp|P81393|MYB08_ANTMA Myb-related protein 308; TrEMBL-Plants: tr|B7FIY9|B7FIY9_MEDTR Uncharacterized protein; Found in the gene: LotjaGi3g1v0521400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:93802226..93804025) extracted from Lotus japonicus Gifu genome v1.2.

CTACTTTACACCAACCTGAAGGTTACCCTTAGTTAATGTCTTCTAACTTGTTATATCACTAATGCAAATATAGTATAAAT ATAGCATCACATAGAGAGCCAACAGCCACTCCCTTTAACCTGTCTCACCAACTCACATCTAGAAGCAATTAGGGTCCTCT CCCTCTCTCCCCCTATCTCTCTCTCAATTTCTCTGTCCCCCAATCTCATTTGGGGTCAAAAGCCTATAAAAATCACACCC CAACTCCTTCCTCAGCTGGCTTTGTTGTTGCAGCAAAGATACAGAGACAAAGTTTCCAAATTTCAATTCCAATTACAGTT TTTTTGTTCCAAAAGTGAAAATAGAGCAACTCAACTCAGTGAGAGGGTGATCAAATATGGGAAGATCACCTTGTTGTGAA AAAGCACACACAAACAAAGGAGCATGGACCAAAGAAGAAGATGATAGACTCATTTCTTATATCAGAGCTCATGGTGAAGG TTGCTGGCGGTCTCTACCCAAAGCCGCAGGCCTCCTCCGGTGCGGCAAGAGCTGCCGTCTCCGGTGGATCAACTACCTCC GCCCGGACCTCAAACGTGGCAACTTCACAGAAGAAGAGGATGAGCTCATCATCAAACTTCACAGTCTCCTTGGCAACAAG TAAGCTCAAAATTTCAAACTTCCATCAAAACTAAACACACCCTTTAACTCCTTTATCAGTTTTCATCTTTTTCAACTTTC CACTGCAAAATCTTTAATTTGAGTACTTTTTTTCATAGGTGGTCTCTGATAGCTGGAAGATTGCCAGGAAGAACAGACAA TGAGATAAAGAATTACTGGAACACTCACATCAGGAGGAAGCTTTTGAACAGAGGAATTGACCCTGCAACTCACAGGCCTC TCAATGAAGTTGCACATGCTTCTCAGAATCAAGAACCTGGTTCTTCTCCTGCTACTGCTTCTGCTTCTGCTTCTGCACCC ACCACTATATCTTTTGCTTCCTCTGCTAAAACAAAGCAACATCAACAGCAACAAGAGACAAGCACTGGTAGTGGTGAACC AAGCATGGTGGTGAGAAGGTCCATGTCCATGGGAGTAGAACGTTGTCCTGATTTGAACCTTGAGTTAACTATTAGTCCTC CACGCCATCATGAGCCTGATGAAACAGGGGAGAGAAACATCTGTTTTGGATGCAGTTTGGGTTTGCAGAACAGTAAGGAT TGCAGCTGTGGAATTGGTAGCACTAGCAGTGGGGACAACATCAATGCTTCTTCTTCTTCTGCTGCTTATGATTTCTTGGG CTTGAAACCTGGTGTTTGGGATTACACAAGCTTGGAAATGAAATAAAAATGAGGCAATTTCTCAGAAATAGCTAGTGTTT GGAAGATAAGTTAAAGAATTGAGTCACTTGATTTTGAAATCTTTTAGCATGTACTGAATGCTTCTCACCAGAATTGATTC TCGCTTCAGAATCGGTGGTAGAAGAGTTTCTAGATATGCATTTTCTCTCCCTCTTTCTTTCTTTTCTTCTCTAATTTGTA TTTGTATAAATAACTAGTTGCTGATGCATAGCATATAAATGTATAGTACCAGTATAGCAGAACAGTATTCGCCATTTTTT TCCTTCATTTTTGTTGTTGTTGCTTTCGTCTGAATCTTCCTCTTTCCTGTTTATTCATGAATCTAGAAATAGGTTAGTAC TATTGATTCTTATTTTTTTCCCAAGGGATAATTAATTGAATGAGTAGGTGCTTATAAAGGTGTGTGCTTGCACAGATGTT TTGTTTGTAACTATTTATATAAATAATTATTAGTACATAC
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0521400.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGAAGATCACCTTGTTGTGAAAAAGCACACACAAACAAAGGAGCATGGACCAAAGAAGAAGATGATAGACTCATTTC TTATATCAGAGCTCATGGTGAAGGTTGCTGGCGGTCTCTACCCAAAGCCGCAGGCCTCCTCCGGTGCGGCAAGAGCTGCC GTCTCCGGTGGATCAACTACCTCCGCCCGGACCTCAAACGTGGCAACTTCACAGAAGAAGAGGATGAGCTCATCATCAAA CTTCACAGTCTCCTTGGCAACAAGTGGTCTCTGATAGCTGGAAGATTGCCAGGAAGAACAGACAATGAGATAAAGAATTA CTGGAACACTCACATCAGGAGGAAGCTTTTGAACAGAGGAATTGACCCTGCAACTCACAGGCCTCTCAATGAAGTTGCAC ATGCTTCTCAGAATCAAGAACCTGGTTCTTCTCCTGCTACTGCTTCTGCTTCTGCTTCTGCACCCACCACTATATCTTTT GCTTCCTCTGCTAAAACAAAGCAACATCAACAGCAACAAGAGACAAGCACTGGTAGTGGTGAACCAAGCATGGTGGTGAG AAGGTCCATGTCCATGGGAGTAGAACGTTGTCCTGATTTGAACCTTGAGTTAACTATTAGTCCTCCACGCCATCATGAGC CTGATGAAACAGGGGAGAGAAACATCTGTTTTGGATGCAGTTTGGGTTTGCAGAACAGTAAGGATTGCAGCTGTGGAATT GGTAGCACTAGCAGTGGGGACAACATCAATGCTTCTTCTTCTTCTGCTGCTTATGATTTCTTGGGCTTGAAACCTGGTGT TTGGGATTACACAAGCTTGGAAATGAAATAA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0521400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGRSPCCEKAHTNKGAWTKEEDDRLISYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIK LHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPLNEVAHASQNQEPGSSPATASASASAPTTISF ASSAKTKQHQQQQETSTGSGEPSMVVRRSMSMGVERCPDLNLELTISPPRHHEPDETGERNICFGCSLGLQNSKDCSCGI GSTSSGDNINASSSSAAYDFLGLKPGVWDYTSLEMK
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10641:SF1124
1 223 223 2.4E-100 –
PANTHER
PTHR10641
1 223 223 2.4E-100
IPR015495
ProSiteProfiles
PS51294
9 61 53 16.407
IPR017930
Gene3D
G3DSA:1.10.10.60
12 67 56 8.4E-18 –
SUPERFAMILY
SSF46689
13 108 96 1.87E-29
IPR009057
SMART
SM00717
13 63 51 3.2E-13
IPR001005
Pfam
PF00249
14 61 48 1.3E-14
IPR001005
CDD
cd00167
16 61 46 1.05845E-10
IPR001005
ProSiteProfiles
PS51294
62 116 55 29.411
IPR017930
SMART
SM00717
66 114 49 6.3E-18
IPR001005
Pfam
PF00249
67 111 45 2.3E-16
IPR001005
Gene3D
G3DSA:1.10.10.60
69 116 48 1.2E-21 –
CDD
cd00167
69 112 44 1.24843E-13
IPR001005
MobiDBLite
mobidb-lite
134 184 51 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0521400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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