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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0522700 |
| Transcript ID | LotjaGi3g1v0522700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cold shock protein; TAIR: AT2G21060.1 glycine-rich protein 2B; Swiss-Prot: sp|Q38896|CSP4_ARATH Cold shock domain-containing protein 4; TrEMBL-Plants: tr|A0A088FZS5|A0A088FZS5_CICAR Cold shock protein; Found in the gene: LotjaGi3g1v0522700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:93973522..93976345) extracted from Lotus japonicus Gifu genome v1.2.
CACAAAATAAAAATTAAATTAAAATAATAATTCAGCACCTGGTGACGTGGCAGTTCCGAACCCTAATCGCGAGTGGTGGA TCCTTTAAAAACGCACCACACCTCAGAACAAACGCTGCAACGAGGGTTTTGGTTTCTGTGTTGAGAGAACAAATCGAGAG TGAAAATGAGCGGTTCAAGGGTGAATGGGAAGGTGAAGTGGTTCAATGACCAGAAGGGTTTCGGATTCATCACCCCTGAC GATGGCGGTGACGATCTCTTCGTTCACCAATCGGAGATCAAATCCGAGGGTTTCCGATGCCTCGGTGAAGGAGAGGACGT CGAGTTCATCGTTGCTTCCGATCCCGATGGCCGCGCCAAGGCTATTGAGGTGACTGGCCCTAACGGCCAAGCTGTGCAAG GAACTCGCCGCGGAGGCGGTGCTGGTGGCGGTGGACGCGGAGGAGGCGGTTATGGTGGAGGCGGATATGGCGGAGGCGGT TACGGTGGGGGAGGACGCGGAGGTGGCGGATATGGAGGAGGAGGCGGATACGGTGGAAGCGGTGGTTATGGTGGTGGCGG TGGATACGGTGGCGGTGGACGAGGAGGTGGTCGCGGAGGCGGCGGTGGTGGTGCTTGCTACAACTGTGGCGAGGAGGGAC ATCTGGCTAGGGACTGCGGCAGCGGAGGAGGCGGCGGTGGAGGCAGGTACGGAGGCGGTGGCGGCGGAGGCGGTGGTGGC GGTGGAAGCTGCTACAGCTGCGGTGAATCTGGACATTTCGCAAGGGACTGTCCTTCCAGCACCCGTTGAAGCCTCTTCTG ATTTGTGGGTCGTTTTAATTATATTTTGAATCTTATTTTGAAGTTGTTATGTTATTGAACTTTTCGGTGGGTTTTCACGC TGGATCTATTCAGTTGTGAAAACTTTTAGGGTTTTTTATGTTATGGATAAGCGAATAGGAGTGTTGGGGGTGGGGGATTT TCTCTTTTTGGGTCGTTGAATGGTGTTGAAATCCTTTAAACATTGCTCTCTGTAAGCAGGATCTGCGTGAACCTATTTTT GCTATGATGGAACTTGTGATTTCGGTGTCATTTTGATGTTTTGGGTATTTTCTGATTCTGCTATTGTGGCGATTTCGTTT ATGGTGTTTGATTACTGTTAAATCGATTTAGAGTTTTATCAAATTGGCCATTGGTTGAGATCCTGCTCTGAATTAGGGTT AACTAATTGCCCATTGTTTGAGATGATCATTTGCTAGATAAACCTTGATCTGTCTTGTTAGCAGTTATTTTGTTATCCTA AAAGATCTCTGTCTGGTATCTTTTCTGTTTTCAATTCTGCATTCAGGCCCTTTTGAAAGCAAATGAATTTTGTTAGGCAT CCAGTTCTTTTATCAATGATCAACTATTACCATTACTGCTTCTGGAATGCTCTTCCTGTTGTTTACTTTTGGAACTTTGC ACCATTCAATTCCATTTGCCTTGATGATGGCATTGTTTATTCAGCTTGTTTTGAACCACTTTCTGAAATCTGGGAAGCCA CTCGTGGTAGCTTTTGGTGGAATGTGTATTCTGTTTTGTGTGAATTTTCCCAAAACATTTGTCATGTTTGGTTCCTTTTG AAAATCTTTGGTTCACAGATGGATTATGAATATTTCAGGGAAAGGATAAATTATATCTGTTTGATGAATCATCTGTTTGT TTTCAAATTGTTCCATTTTTTGAATTCCTATTTCATTCTATGTGCCTTAACATCATTTTTGGTTGACCAACCAGCAAACT TAAGATTTTGAAATGTCAAATGGTTTAGACACATTTCTAACTTCATGGATGACCTTTGATAAATTCGCACACTTTCTCTT ACATCTAGTTTCATTGATTCTTAACTGTGTAATCTCTCTTCTTTGGCTTTAATATTTCGTCCAATTACTATCGTTTCTGA ATTTTGTTGTTTATGAACTATTTTCTGTTTTTAAGATGTTCTTTGACTCTGATGGTCAATTCAATGGTATAAGTAGGTCT TTGGAGTCCCTATTCCTCTACACTGTCAACTTCTGCTTGTACTCTGTTTTCTTATCCAGAAAATTCCCGTTTCAATGATG CTTGAGTTGTGTGCCGCCTTGAATCTTCATCAGCATATTCCATTTTCAAAAGCACTATTTCATTTAACCATTATTTAATA TCGGAGAATACATGAAAATTTGTTTCCTATAGTTAATGTTGAAAACAAGTTGTTACCAAATATTTGTGAATCTGTAAAAT GTTTTTCATATAACATTGCTTTGAAACTGGGCATACTGTGTGCTGTGAGCTGATTTGTGTACTTCCATTTTACAATTGAG CTGTTTTTTGTAGTCAACAGATTTAGGAATGCTTCCATCCTCAAATGAGGACACAAACTACCACCCTATTTTGAAACTCT TCCATTTTTTTTCCTTCTTTACACTTGCAACTTTGCAAGGATTCTACTATTCAACATAGTAAGGACGTGGTTTATTTTTT GCTGGTTGCAAAAAAAAGTCTGGATATACACAACTTGGTGAGCACATGTTTGGATTTTTCCTATCTTCGTTATATTAAAC TCAAATGAGCAATGGACCCATTTTTGTTTTACGGTTGTCTAGGCACCTTTTCAGGTAATTGGAGTTTGGTAGGAGCATTT AACTTAAATTTATAATTTGAAATCGTTTGTACTATTGTCTATACTTTTGGCATTACCCCTTCTCAACCAACGCCTTTGCA CATATGTTTGTTCCTCACGTCTGTACTCCATACCTGAAATCCAATCGAGTGAAGGAGGTTATTGTCTTTGATCTGGTGTT TCCCCACTATCGATCATTTATATA
CDS sequence (LotjaGi3g1v0522700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGCGGTTCAAGGGTGAATGGGAAGGTGAAGTGGTTCAATGACCAGAAGGGTTTCGGATTCATCACCCCTGACGATGG CGGTGACGATCTCTTCGTTCACCAATCGGAGATCAAATCCGAGGGTTTCCGATGCCTCGGTGAAGGAGAGGACGTCGAGT TCATCGTTGCTTCCGATCCCGATGGCCGCGCCAAGGCTATTGAGGTGACTGGCCCTAACGGCCAAGCTGTGCAAGGAACT CGCCGCGGAGGCGGTGCTGGTGGCGGTGGACGCGGAGGAGGCGGTTATGGTGGAGGCGGATATGGCGGAGGCGGTTACGG TGGGGGAGGACGCGGAGGTGGCGGATATGGAGGAGGAGGCGGATACGGTGGAAGCGGTGGTTATGGTGGTGGCGGTGGAT ACGGTGGCGGTGGACGAGGAGGTGGTCGCGGAGGCGGCGGTGGTGGTGCTTGCTACAACTGTGGCGAGGAGGGACATCTG GCTAGGGACTGCGGCAGCGGAGGAGGCGGCGGTGGAGGCAGGTACGGAGGCGGTGGCGGCGGAGGCGGTGGTGGCGGTGG AAGCTGCTACAGCTGCGGTGAATCTGGACATTTCGCAAGGGACTGTCCTTCCAGCACCCGTTGA
Protein sequence (LotjaGi3g1v0522700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSGSRVNGKVKWFNDQKGFGFITPDDGGDDLFVHQSEIKSEGFRCLGEGEDVEFIVASDPDGRAKAIEVTGPNGQAVQGT RRGGGAGGGGRGGGGYGGGGYGGGGYGGGGRGGGGYGGGGGYGGSGGYGGGGGYGGGGRGGGRGGGGGGACYNCGEEGHL ARDCGSGGGGGGGRYGGGGGGGGGGGGSCYSCGESGHFARDCPSSTR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 2 | 83 | 82 | 8.8E-30 | – | |
| PANTHER | 3 | 123 | 121 | 3.1E-59 | – | |
| SUPERFAMILY | 4 | 71 | 68 | 3.64E-21 | ||
| ProSiteProfiles | 5 | 71 | 67 | 35.092 | – | |
| Pfam | 7 | 71 | 65 | 5.4E-25 | ||
| SMART | 7 | 72 | 66 | 8.5E-26 | ||
| PRINTS | 8 | 23 | 16 | 4.4E-13 | ||
| CDD | 8 | 71 | 64 | 1.37379E-24 | ||
| ProSitePatterns | 19 | 38 | 20 | - | ||
| PRINTS | 29 | 38 | 10 | 4.4E-13 | ||
| PRINTS | 44 | 62 | 19 | 4.4E-13 | ||
| PANTHER | 111 | 205 | 95 | 3.1E-59 | – | |
| SUPERFAMILY | 141 | 205 | 65 | 1.35E-10 | ||
| Gene3D | 147 | 174 | 28 | 2.1E-6 | – | |
| SMART | 150 | 166 | 17 | 3.1E-5 | ||
| Pfam | 150 | 164 | 15 | 5.7E-8 | ||
| ProSiteProfiles | 151 | 164 | 14 | 11.334 | ||
| Gene3D | 185 | 207 | 23 | 6.4E-8 | – | |
| SMART | 188 | 204 | 17 | 9.3E-6 | ||
| Pfam | 188 | 204 | 17 | 4.1E-8 | ||
| ProSiteProfiles | 189 | 204 | 16 | 11.482 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi3g1v0522700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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