Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0523000 |
| Transcript ID | LotjaGi3g1v0523000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Disease resistance protein (NBS-LRR class) family; TAIR: AT4G27190.1 NB-ARC domain-containing disease resistance protein; Swiss-Prot: sp|Q9T048|DRL27_ARATH Disease resistance protein At4g27190; TrEMBL-Plants: tr|G7KHA8|G7KHA8_MEDTR NB-ARC domain disease resistance protein; Found in the gene: LotjaGi3g1v0523000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:94011599..94014713) extracted from Lotus japonicus Gifu genome v1.2.
CCAGACATCATATAGCAATTGTATTCCATCTAAAGAAGAGGTAGCTTTTCATTTGATTGCTCAAGCCTTGGTTCAAAGTA ATTTACTGATTTAACTTTTATGGTGTGACTTGATCTCATTCTCTCAACCTTCCTTCAATTTCCTAACTTTCTCACTCACA TGCAATTGAAACATGCTATTTAGCTTTGATTGTCCACCTTCACTTTCTTCGGATAGATTGATGTATTTAGCTGCACATAG TAAGATGAGAAAAACAAACTGGTGTAATATTAAGATGTTATTTGATTTGATAGTATTTGCTTTTAGGAGATTTATTTTTT ATTTAGGAGATTAGGAGAGATATTGTACATGTAGCATCTGTAAATTGTAATTACTTAGTGTATTTGTATTCAAGTAATAA AATTATATTTTCTCCATATTTCAAGTAAAACAAAAAGGAGAAACCACTGCTTAAATGAATTGGTGCTTCCCCTTTTCAGA TTTACAGATTTAGCCACTGCTCTCTGGCCTCCTCTGCCTTCAAAAACATCTGATAAATCCCTTATTTTTCCCCTAAAGCC CCCAGACTTATATATTTCATTAGAATTTGAATTGCCAGTCCAGTACAGCTCTAAGCACCAACCCTACTAATGTATAAGCA TTGGAGCCTTTGTGCACCAGCTCTATTTAGCGCTAACTGCTGAGAAACCTGCAACAAATGAAAAATAAAGGACATTAAAA GTAGCCAAATTACAAATTAGGCTACCACTATAAAAATTTCTGAATGTTGATAAAACTAACCTAAGACCCTTCTCTAACTA TCTAAACTGACCACTAAAAAAATCCTACAAACTTAAGCAATTAAGCAAAAAGCCAACAACACATTGTTATAATCATGGGG GGATGGGGCAGAGCATAATTCTACTTGATGCTTAACTTTTCCAGAAATAATACTCCTTTTTTCCAAGAAGAAAACAATCC TTTATATTCATTTTGTTATGCTAAAAGAGAACTTGAGTTTAATTTCAAATATGCTACACTAAGCTTCCTATTATCCTCCT AAATGTCTGTGTCACTACAGCTAGGAGGATAAGAGGAAGCTGAATCAGGCTTGACCACATGCTTGCTTTCTGAATCATTA CAGCAAGTTCATCTCGCATTTTCAGGTGAATTAAACTGCTTTTTGTGGAGAAAATAATGGACTGGCTGTCGTGCTTCGCA TCTGCATTTGGAAAAGAGTTGGTATGCGGGGCAGTAGATGAATTACGTTATCCTTGCTGCTTCAACAAATTTGTGGAGGA CCTTCAACATAAAGAAAACAATTTGATCACAACTATAAATAGCGTTGAAGACCGTGCTAAACATGCTAAGAAGCAATCAA TGAAGACTGCTGATGTTTTGGATAAGTGGCTAAAGGAAGCTAACCCTCTCAAAGACAATGTGGAGGATCTACTGAAAGAA GCAAGAACAAGGAAGAGCAGCAATTGTCTTTGGCATTGTCCAAATTGGCTCTGGCGATACCGTTTAGGCAAGAAGTTAGC AAACAAAAAATATGACATTGAAAAATGTAATGAAGAAGGGATTAAGTGCATAGAACTTGAACGTGTTGCAACCCTTCCAA GCATGCCATATTTTTCTGGAGACAAATGTTTGGAATTTGATAGTAGAAAAGTTGCTTATCAGCAACTTATGGAGGCAGTA GAAGATGATGAGGTTTCCATGATTGGATTGTATGGTATGGGGGGTTGTGGTAAAACCACACTGGCAATGAAACTTATGAA CACACAAAAACATCTGTTTGACAAAATGCTTTTTGTGCCTGTGTCTAGTGCACTAGATGTCCGGAGGATCCAAGATAAAA TTGCAAGCTCGCTACAGTTTCAGTTTCCTGAAAGTGAAGAAAGGGAGAGAGCCCAACGCTTGCACACAAGGTTAATTCAA GAAAATAAGATTCTTTTGGTTCTAGATGATGTGTGGGAAATTCTTGATTTCGACACCATTGGGATCCCCACTAGTACAAC TCATAAAGGATTCAAGGTTTTGATTACCACTCGGTTAGAATCAGTTTGTACTTCGATGGATTGTCAAAGAAAGATTTCAC TGTCAATCTTAAAGAATGATGAAGCATGGGATCTTTTCCAAAAGCAAGCATGCTTGTCTGAAGTCACCTCCGAGTCCTTA AAGCATTTGGAAAGGCTAATTTCAGATGAATGTAAAGGACTACCTGTTGCTATTGCAGCTGTGGCCAGCACTTTGAAAGG AGAGTCCGAAGTAGAATGGAAGGTTGCATTGGATAGATTGCGAAATTCGAAGCCAGTGAATGTTGAAAAAGGTCTTCAAA ATCCTTACAAGTGCTTGCAGTTGAGCTATGATAATTTGGATACTGAAGAAGCCAAGTCGCTTTTCTTGTTGTGCTCTGTG TACCCTGAAGACTATGAAATTTCAGTAGAGCAATTAACCAGATGTGCAATAGGGCTAGGCCTTGGTGGAGAAATTCACTC ATATGAAGGGGCAAGGAATGAAATCAGTGCAACTAAAAATAAGCTCATAAGTTCTTGTTTACTATTAGCTGTTAAAGAGG AAGAGGAACATGTCAAGATGCATGACTTGGTTCGTGATGTTGCTCATTGGATTCCAAAGGAACAGTATAGGAATATGAAC GGAAAATATTCACCAAGATACCTATGGACTGAGAATGTGCCATATGAACTGGATTTTTCCAATCTTGAATATCTACGAAT ACACACAGAATTGGAAATATCAGGTGAAGTTTTCAAAAGGATGGGGAAACTTAGAGTTTTGCTTCTTTCCAATCGCTAGG TAAGAAGGACATTGTCGACTATGTCATTCAAATCTTTGACAAACCTTCGATGTCTATTCCTCTTCCTCGGTTTGTGGGAA TTAAGTGACTTTTCATTTTTAGGAGATATGAAGGAACTTGAAAGTCTTGATTTGTATTGTTGTTCATTCATTGAATTACC GAATGATGTTGCAGTTACACAACTGAAGAACTTGAGATTGTTAAGTTTAAGAATATGTGACATAGAAGAGAATAATTTTG AGGTTATTGCAAGACTCAAACTGTTGGAAGAATTGTACATTGTTGATGGGTCATTATGGAATCACTATAGTGAAA
CDS sequence (LotjaGi3g1v0523000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACTGGCTGTCGTGCTTCGCATCTGCATTTGGAAAAGAGTTGGTATGCGGGGCAGTAGATGAATTACGTTATCCTTG CTGCTTCAACAAATTTGTGGAGGACCTTCAACATAAAGAAAACAATTTGATCACAACTATAAATAGCGTTGAAGACCGTG CTAAACATGCTAAGAAGCAATCAATGAAGACTGCTGATGTTTTGGATAAGTGGCTAAAGGAAGCTAACCCTCTCAAAGAC AATGTGGAGGATCTACTGAAAGAAGCAAGAACAAGGAAGAGCAGCAATTGTCTTTGGCATTGTCCAAATTGGCTCTGGCG ATACCGTTTAGGCAAGAAGTTAGCAAACAAAAAATATGACATTGAAAAATGTAATGAAGAAGGGATTAAGTGCATAGAAC TTGAACGTGTTGCAACCCTTCCAAGCATGCCATATTTTTCTGGAGACAAATGTTTGGAATTTGATAGTAGAAAAGTTGCT TATCAGCAACTTATGGAGGCAGTAGAAGATGATGAGGTTTCCATGATTGGATTGTATGGTATGGGGGGTTGTGGTAAAAC CACACTGGCAATGAAACTTATGAACACACAAAAACATCTGTTTGACAAAATGCTTTTTGTGCCTGTGTCTAGTGCACTAG ATGTCCGGAGGATCCAAGATAAAATTGCAAGCTCGCTACAGTTTCAGTTTCCTGAAAGTGAAGAAAGGGAGAGAGCCCAA CGCTTGCACACAAGGTTAATTCAAGAAAATAAGATTCTTTTGGTTCTAGATGATGTGTGGGAAATTCTTGATTTCGACAC CATTGGGATCCCCACTAGTACAACTCATAAAGGATTCAAGGTTTTGATTACCACTCGGTTAGAATCAGTTTGTACTTCGA TGGATTGTCAAAGAAAGATTTCACTGTCAATCTTAAAGAATGATGAAGCATGGGATCTTTTCCAAAAGCAAGCATGCTTG TCTGAAGTCACCTCCGAGTCCTTAAAGCATTTGGAAAGGCTAATTTCAGATGAATGTAAAGGACTACCTGTTGCTATTGC AGCTGTGGCCAGCACTTTGAAAGGAGAGTCCGAAGTAGAATGGAAGGTTGCATTGGATAGATTGCGAAATTCGAAGCCAG TGAATGTTGAAAAAGGTCTTCAAAATCCTTACAAGTGCTTGCAGTTGAGCTATGATAATTTGGATACTGAAGAAGCCAAG TCGCTTTTCTTGTTGTGCTCTGTGTACCCTGAAGACTATGAAATTTCAGTAGAGCAATTAACCAGATGTGCAATAGGGCT AGGCCTTGGTGGAGAAATTCACTCATATGAAGGGGCAAGGAATGAAATCAGTGCAACTAAAAATAAGCTCATAAGTTCTT GTTTACTATTAGCTGTTAAAGAGGAAGAGGAACATGTCAAGATGCATGACTTGGTTCGTGATGTTGCTCATTGGATTCCA AAGGAACAGTATAGGAATATGAACGGAAAATATTCACCAAGATACCTATGGACTGAGAATGTGCCATATGAACTGGATTT TTCCAATCTTGAATATCTACGAATACACACAGAATTGGAAATATCAGGTGAAGTTTTCAAAAGGATGGGGAAACTTAGAG TTTTGCTTCTTTCCAATCGCTAG
Protein sequence (LotjaGi3g1v0523000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDWLSCFASAFGKELVCGAVDELRYPCCFNKFVEDLQHKENNLITTINSVEDRAKHAKKQSMKTADVLDKWLKEANPLKD NVEDLLKEARTRKSSNCLWHCPNWLWRYRLGKKLANKKYDIEKCNEEGIKCIELERVATLPSMPYFSGDKCLEFDSRKVA YQQLMEAVEDDEVSMIGLYGMGGCGKTTLAMKLMNTQKHLFDKMLFVPVSSALDVRRIQDKIASSLQFQFPESEERERAQ RLHTRLIQENKILLVLDDVWEILDFDTIGIPTSTTHKGFKVLITTRLESVCTSMDCQRKISLSILKNDEAWDLFQKQACL SEVTSESLKHLERLISDECKGLPVAIAAVASTLKGESEVEWKVALDRLRNSKPVNVEKGLQNPYKCLQLSYDNLDTEEAK SLFLLCSVYPEDYEISVEQLTRCAIGLGLGGEIHSYEGARNEISATKNKLISSCLLLAVKEEEEHVKMHDLVRDVAHWIP KEQYRNMNGKYSPRYLWTENVPYELDFSNLEYLRIHTELEISGEVFKRMGKLRVLLLSNR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 16 | 539 | 524 | 1.6E-152 | – | |
| PANTHER | 16 | 539 | 524 | 1.6E-152 | – | |
| Coils | 33 | 53 | 21 | - | – | |
| Coils | 68 | 88 | 21 | - | – | |
| Gene3D | 143 | 301 | 159 | 4.2E-31 | – | |
| SUPERFAMILY | 154 | 406 | 253 | 4.47E-49 | ||
| CDD | 160 | 285 | 126 | 0.00147994 | – | |
| Pfam | 162 | 393 | 232 | 7.1E-50 | ||
| PRINTS | 175 | 190 | 16 | 2.7E-19 | – | |
| PRINTS | 246 | 260 | 15 | 2.7E-19 | – | |
| Gene3D | 305 | 394 | 90 | 1.3E-6 | – | |
| PRINTS | 339 | 353 | 15 | 2.7E-19 | – | |
| PRINTS | 527 | 540 | 14 | 2.7E-19 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ADP binding | Interacting selectively and non-covalently with ADP, adenosine 5'-diphosphate. |
Expression pattern of LotjaGi3g1v0523000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…