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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0524400 |
| Transcript ID | LotjaGi3g1v0524400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Endo-1,4-beta-xylanase; TAIR: AT4G33840.1 Glycosyl hydrolase family 10 protein; Swiss-Prot: sp|A3DH97|RSGI6_CLOTH Anti-sigma-I factor RsgI6; TrEMBL-Plants: tr|A0A072UFN4|A0A072UFN4_MEDTR Glycosyl hydrolase family 10 protein; Found in the gene: LotjaGi3g1v0524400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:94131165..94134606) extracted from Lotus japonicus Gifu genome v1.2.
TCTAACTGTTGTTATAGATTGTGCACTCAATCTTTGCAACCTCTAAATTTCTACCTCCCATAATTTTGTTGTTTGCTTTT CTTTTCTTCTCCCTAGATTAGATTCTCAAATGTGTCAATTGAAGCAGGTTGGAAACAAAATTATGAGTCTTGTCCTTCTA ATATGTGTGATCATTTTAGCAGGTTTGTTTTCTTGTCCTTACTCGACTCATATTGATAGTTTTACAAAAGGTTTTCATGT TCAGGTAAATAAGTATAACAAAAGTTCCTAAAAATAACTTTTGTGGGTGGAGAATGATTTGTGAAGATTAAAAATGAATC CAAATATACATCTTTTTTTTTATAAATCATTTTTTTTCTCTCTAGCTATCTCATTTTTTTTTGTCGTATCACATCATATA TCACAGCTATAATTTATTTCTCATCTTTTCCTATCTCACTCTTTTTTTTTTCGATACATCGGAAATTTTTCCTATCTCAC TCTAAATGTATACACTAATATTATTGTTTTTATGTAAAAAATAAATTGAAATTGGGAGGTTAATTTGCTTTGACATGTGA AAAACTCTATTTCTTTTAGATGAGATAGATAAAATTGAAATTTTAAACATTTATTTACATTTTATTATTTTAATCATTAT ATTTATAAAATAAATTTATTTATTTTGATGCACTAAAGTTTAAAACTTTTTTATGCAAATATTAAATTATTTAATTTAAT GCCATATTATCAAAAACAATTATTTTCTTTTTTATTTTAATTAAACTAAAAAATTATTTTTTAATGTGACAACCAATTAT TGGATGTCAGTGCACACAAATTAAAATCCAACTAATATATCTCATTTTCCACCACAGGTTTTGAAGTTGAAGCACTATCC TATGATTACTCTGCCAGCATTGAAGTAAGATCTCTCTCCAACATTTATTTTCAAAGGTGTTATACATTACAGTACTGAAA AATTTCACTCTAATACGTTTGGGTATTACATGTTTTCAACTTCAGTGTTTGGCAAATCCACAAAAGCCTCAGTACAATGG AGGAATCATCCAAAACCCAGAACTGAATGATGGACTCAAAGGGTGGACTGCATTTAGGGGTGCAAAAATAGAACATAGAG AATCATCAAACAACAAATATGTGGTAGCCCATAGCAGAAATCAAACACATGATAGTGTTTCTCAGAAGATTTACTTGCAA AAGGATAACCATTATACCTTATCAGGTAAATTTTGTACTAATTCAGCACTGTTGCTCTTACCTGATGTGATTATTTATAT ATGTATATGAAAGATCAATAAGATAATAACCCTACTGCTTTTTTTTCTTATATGATTCTGGGTTGAAATTATCCAGCTTG GATACAAGTGAGTGATGGAAAAGTTCCAGTAAGAGCATTTGTCAAAACAACTGAAGGACTCAAATTTGCTGGTGCCACTT TTGCTGAGTCTAATTGTTGGTCTATGCTTAAGGGTGGTCTCACAGCAAATACATCAGGAACTGCTGAGCTTTATTTTGAG GTACTTCTAAAATATTATTGATAATTTTATTTCTGTACTGTTTTGATCAAATGAGAAGTAAGGGATTTTCTCATGTAATG AAAATTAGTCATTAGTATTTTCCCGGAATTTTTCTTAAGTCTTCAAAATGCTGAATTATGCAGAGCGAAAACACTTCAGT GGAAATTTGGATTGATAGCATTTCCTTGCAACCTTTCACACAAAAGCAATGGAGTTCTCATCAACATCAAAGCACTGAGA AGGTAAGAATTACATAAACATCACAAGTTAAAATAACAAGGATTGGAAACCTTGTACAATCGATTATGAAGTCAGAATTA ATTATGAAGAGAAGTTTGTGTGAGTTGAGTAGTTTTTGGGTTCTGATTAATAGGTGACAAATTTGATTCTGACTTTGCAG GCTCGCAAGAGCAAGGTATTAGTCCAAGCAATTGATGAACAAGGAAATCCTTTACCAAATGCAAGCATACACATTACACA AAAGAGGTTAGGTTTTCCATTTGGGAGTGCCATTAACCACAGCATCCTGAACAATGGGGCATATCAAAATTGGTTCACCT CAAGGTTCACAGTGACCACATTTGAGAATGAAATGAAGTGGTACATGACAGAAACAACACAAGGCAAGCCTAACTACTAT TATGCTGATGCCATGTTAAAGTTTGCCAAGCAACACAACATCGCGGTTCGCGGCCACAACATTTTCTGGGATGATCCTCA ATTCCAACCTGGTTGGCTTTCTTCACTCTCACCATTCCAACTCAAATCAGCAGTGAGAAACAGGATCAATTCCCTTGTGT ATAAATACAGGGGCCAACTCATTGGTTGGGATGTTGTGAATGAAAATATGCACAATTCATTGTTTGAAAGCAAACTTGGA CAAACTTTTTCAGCCCAGACTTTCAAAGTGGTTCATTTTATTGATGGCCATACCACTTTGTTTTTAAATGAATATAACAC CATTGAGGACCAGAGAGATGGTGCAGCAAACCCTGCAAGGTACCTCCAGAAGATCAAAGAGATCCAAAGTTATCCGGGAA ATAAAGGATTGCCTCTTGGAATTGGATTGGAGTCTCATTTCCCTGAATTCCCTCCAAACATGCCTTACATGAGAGCTTCC ATTGATACTCTTGCAGCCACTGGTTTACCTATTTGGATCACAGAACTAGATGTAAAAAACCAGAATGGACAGGTAAAGTT AAACAATCACTTATTTTCAAAAAAAATTCACTTATTTAAAAATTGTACTACACTTTGCAGCTTCTCCCCAGAAGTGATTA TGAGACTTCTGACAGAACCAAACATACTATTAGATATATTGCTTATATATACTAATCTTTGCATCAAATTTTGGTTCTAC CATTAATCCATTGATGAATTACTTCACTAAAGTGTATTTCCATTCATGATATGTGCAGGCAGGAGTTCTTGAGCAGGTTC TAAGAGAAATACACTCTCACCCTGCGATTCGAGGCATTGTAATGTGGACAGCATGGTCGCCACAAGGTTGCTATACAATG TGCTTAACAGATAACAATTTCAAAAACTTGCCAACAGGGAATGTTGTGGACAAGCTTCTTCATGAGTGGGGTTGGTCGAA AACGTTATCAGGGACAACAGACCAGAATGGGAACCTTGAGGTGTCACTTTTTCATGGAGATTATGAAGTGGAAATTAGTC ACCCTGCTAAGAAGAATTATACTCTCACTCATCATGTTCAAGTAGTTCCAAATGATGAGTCTGGGAAATCATCTCAATTT GTACAACTTTCTATGTAGTTCATTTATTTTGTAGGTTAGAGTTGTGGTTCAAAATGGGAACCATAAACTTATGACAAAAT GTTTTAAAAATTGGATTGATTATGTGATTTACAGTTTAAAAAAAAATAGTTCAGTCATGTTTAAATTGAAGATGAACTCG TG
CDS sequence (LotjaGi3g1v0524400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGTCAATTGAAGCAGGTTGGAAACAAAATTATGAGTCTTGTCCTTCTAATATGTGTGATCATTTTAGCAGGTTTTGA AGTTGAAGCACTATCCTATGATTACTCTGCCAGCATTGAATGTTTGGCAAATCCACAAAAGCCTCAGTACAATGGAGGAA TCATCCAAAACCCAGAACTGAATGATGGACTCAAAGGGTGGACTGCATTTAGGGGTGCAAAAATAGAACATAGAGAATCA TCAAACAACAAATATGTGGTAGCCCATAGCAGAAATCAAACACATGATAGTGTTTCTCAGAAGATTTACTTGCAAAAGGA TAACCATTATACCTTATCAGCTTGGATACAAGTGAGTGATGGAAAAGTTCCAGTAAGAGCATTTGTCAAAACAACTGAAG GACTCAAATTTGCTGGTGCCACTTTTGCTGAGTCTAATTGTTGGTCTATGCTTAAGGGTGGTCTCACAGCAAATACATCA GGAACTGCTGAGCTTTATTTTGAGAGCGAAAACACTTCAGTGGAAATTTGGATTGATAGCATTTCCTTGCAACCTTTCAC ACAAAAGCAATGGAGTTCTCATCAACATCAAAGCACTGAGAAGGCTCGCAAGAGCAAGGTATTAGTCCAAGCAATTGATG AACAAGGAAATCCTTTACCAAATGCAAGCATACACATTACACAAAAGAGGTTAGGTTTTCCATTTGGGAGTGCCATTAAC CACAGCATCCTGAACAATGGGGCATATCAAAATTGGTTCACCTCAAGGTTCACAGTGACCACATTTGAGAATGAAATGAA GTGGTACATGACAGAAACAACACAAGGCAAGCCTAACTACTATTATGCTGATGCCATGTTAAAGTTTGCCAAGCAACACA ACATCGCGGTTCGCGGCCACAACATTTTCTGGGATGATCCTCAATTCCAACCTGGTTGGCTTTCTTCACTCTCACCATTC CAACTCAAATCAGCAGTGAGAAACAGGATCAATTCCCTTGTGTATAAATACAGGGGCCAACTCATTGGTTGGGATGTTGT GAATGAAAATATGCACAATTCATTGTTTGAAAGCAAACTTGGACAAACTTTTTCAGCCCAGACTTTCAAAGTGGTTCATT TTATTGATGGCCATACCACTTTGTTTTTAAATGAATATAACACCATTGAGGACCAGAGAGATGGTGCAGCAAACCCTGCA AGGTACCTCCAGAAGATCAAAGAGATCCAAAGTTATCCGGGAAATAAAGGATTGCCTCTTGGAATTGGATTGGAGTCTCA TTTCCCTGAATTCCCTCCAAACATGCCTTACATGAGAGCTTCCATTGATACTCTTGCAGCCACTGGTTTACCTATTTGGA TCACAGAACTAGATGTAAAAAACCAGAATGGACAGGCAGGAGTTCTTGAGCAGGTTCTAAGAGAAATACACTCTCACCCT GCGATTCGAGGCATTGTAATGTGGACAGCATGGTCGCCACAAGGTTGCTATACAATGTGCTTAACAGATAACAATTTCAA AAACTTGCCAACAGGGAATGTTGTGGACAAGCTTCTTCATGAGTGGGGTTGGTCGAAAACGTTATCAGGGACAACAGACC AGAATGGGAACCTTGAGGTGTCACTTTTTCATGGAGATTATGAAGTGGAAATTAGTCACCCTGCTAAGAAGAATTATACT CTCACTCATCATGTTCAAGTAGTTCCAAATGATGAGTCTGGGAAATCATCTCAATTTGTACAACTTTCTATGTAG
Protein sequence (LotjaGi3g1v0524400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MCQLKQVGNKIMSLVLLICVIILAGFEVEALSYDYSASIECLANPQKPQYNGGIIQNPELNDGLKGWTAFRGAKIEHRES SNNKYVVAHSRNQTHDSVSQKIYLQKDNHYTLSAWIQVSDGKVPVRAFVKTTEGLKFAGATFAESNCWSMLKGGLTANTS GTAELYFESENTSVEIWIDSISLQPFTQKQWSSHQHQSTEKARKSKVLVQAIDEQGNPLPNASIHITQKRLGFPFGSAIN HSILNNGAYQNWFTSRFTVTTFENEMKWYMTETTQGKPNYYYADAMLKFAKQHNIAVRGHNIFWDDPQFQPGWLSSLSPF QLKSAVRNRINSLVYKYRGQLIGWDVVNENMHNSLFESKLGQTFSAQTFKVVHFIDGHTTLFLNEYNTIEDQRDGAANPA RYLQKIKEIQSYPGNKGLPLGIGLESHFPEFPPNMPYMRASIDTLAATGLPIWITELDVKNQNGQAGVLEQVLREIHSHP AIRGIVMWTAWSPQGCYTMCLTDNNFKNLPTGNVVDKLLHEWGWSKTLSGTTDQNGNLEVSLFHGDYEVEISHPAKKNYT LTHHVQVVPNDESGKSSQFVQLSM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 30 | 30 | - | – | |
| Phobius | 1 | 13 | 13 | - | – | |
| SignalP_EUK | 1 | 30 | 30 | - | – | |
| TMHMM | 7 | 26 | 20 | - | – | |
| Phobius | 14 | 25 | 12 | - | – | |
| Phobius | 26 | 30 | 5 | - | – | |
| Phobius | 31 | 584 | 554 | - | – | |
| PANTHER | 41 | 579 | 539 | 7.4E-262 | – | |
| PANTHER | 41 | 579 | 539 | 7.4E-262 | – | |
| Gene3D | 49 | 184 | 136 | 1.9E-22 | ||
| SUPERFAMILY | 51 | 184 | 134 | 1.79E-13 | ||
| Pfam | 54 | 170 | 117 | 5.8E-9 | ||
| SUPERFAMILY | 217 | 526 | 310 | 1.69E-89 | ||
| Gene3D | 221 | 527 | 307 | 1.3E-72 | – | |
| ProSiteProfiles | 228 | 518 | 291 | 32.124 | ||
| Pfam | 233 | 489 | 257 | 1.4E-45 | ||
| SMART | 266 | 519 | 254 | 3.0E-10 | ||
| ProSitePatterns | 449 | 459 | 11 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Hydrolase activity, hydrolyzing O-glycosyl compounds | Catalysis of the hydrolysis of any O-glycosyl bond. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. | ||
| Molecular function | Hydrolase activity, acting on glycosyl bonds | Catalysis of the hydrolysis of any glycosyl bond. |
Expression pattern of LotjaGi3g1v0524400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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