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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0526600 |
| Transcript ID | LotjaGi3g1v0526600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT5G15300.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9LXF2|PP385_ARATH Pentatricopeptide repeat-containing protein At5g15300; TrEMBL-Plants: tr|I1JZD0|I1JZD0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0526600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:94306536..94309586) extracted from Lotus japonicus Gifu genome v1.2.
AGGGATGGTGCCCCAGTCTAAGACCGAGAAAACTATAAACTTACAGTTACCTCACCTCAAGAGAACTAGGGGGAGCTCAA ACCTGCGACCTATCAGTACGAGACTCTATCATGCTCCACTAAACCAACCCCTTGAAATTATTTGGATAGTGCTGCACCCC TATTATTTTCTTTGGCTTCCATAACAATGAAAGCTCTAACTTTCACATGTCAATTGATTTACCTCCCTTTCCAACGTGTG CACCTGACGTCCTGACTAAGCTGAGCTGAGGTGGCTGGGTGGAACTGGGGTGGTGGCTTAAACCGGGTGTGAACGTACAC ATTTCATATCTGTGCTTAATCGTAGGTAGTGATGGCAATGACATGATGGGAACCACGTTTTGGCGTGTGAGCAGCATCCT AAGCCAACTCTCTTCCATGTCGGAACTGAAACAACTTCAAGCCATGATCACCAAAGCAGGCTTCGACACTCACATTCCTT TTAACACAAAGTTGATATTCTTTTCAGCACTTTCTCCAATGGGAAACCTCTCCTATGCTCATTCTCTTTTCCAACAATCT TCCATGGTCAACAACCCCTTTGCCTGCAACACCATGATTCGTGCTTTCGCCAACAGTCCCTCCCCTCTTCAAGCTCTGCA CATTTACAACCACATGAGAAACACCAATGTTGTCTCTGACAACTTCACCTACAATTTTGTCCTCAAGGCATGCTCCAAAG CTTACAAGTTCATTCAAGAATGTGGGCAGTGTGATGAGGTGGCTGTTGTTTCTAAAGGACGTGAAGTTCACTGCACTGTG GTTAGAATGGGGTTTGAACAAGACCCATCTGTTCAAAACTCCTTGCTTTATATGTACTCTCAATGTGGGTTGGTCCCGGT TGCCCAACACCTGTTTGATGAAATGAGTGAGAGAAGTTTGGCTGCTTGGAATATCATGATATCAGCGTATGATCGTGTTA ATGATTTTAAATCAGCAGATTACCTTTTTGAATCAATGCCGCAGAAGAATGTTGTTTCGTGGAACACTGTGATTGCGAGA TACATTAGGTTGGGTGATGTTGAGGTTGCGAGAAGGGTGTTTGGGTTAATGACGGAGAGGGATGCGGTGTCATGGAATTC GATGATTGCTGGTTGTGTTTCTGTTAAGGATTATGCAGGAGTATTGGGGCTATTTTCTGAGATGCAGAATGCTGAGGTAA AACCAACAGAGGTAACACTTATATCAGTTCTGGGTGCCTGTGCTGAAACGGGTGCACTTGAGATGGGTGAGAAGATACAT GAGTCTCTCAGAGTGTGTGAGCATAAGATTGAAGGGTATTTAGGTAATGCCCTGGTGAATATGTATTGTAAATGTGGGAA TTTGAGCTCAGCATGGGAAGTATTTTATGGGATGAAGATGAAAACTTTGAGTTGTTGGAATGCAATGATTGTTGGTTTGG CTGTCCATGGTTACTGTGAGGAGGCCCTGGAATTGTTTTCACAGATGGAACAGAGGCTTGGTAGTATTAGGCCGAATCGG GTAACGTTTATTGGTGTTTTGGTTGGCTGTAGTCATAAGGGTTTGGTCGATAAAGCAAGATGGTATTTTAATCGGATGGT AAACCAGTACCAAATCTTGCCTGATATCAAGCATTATGGTTGTATGGTTGATCTTTTAAGCAGATGTGGTTTGTTGGAAG AGGCCCATCAGATGATAAAAAATGCTCCTTTCCAAGATAGTGCTGTTTTATGGAGAACATTGTTGGGTGCTTGTAGAACA CAAGGTGATGTGGAGTTGGCTAAGATATGCTTCCAACAACTTGCCAAACTGGAGCATCTAACAGATGGAGATTACATGTT GTTATCTAACATTTATGCTGAAGCTGAGAGATGGGATGAGGTTGAGCAACTAAGGAGTGAAATGATAGATTTACATGTTC CTAAGCAAGTTGGCTACAGCCAAATTGGTATAAATGAATCTGATAAGGTTCCCTGCACAAGCCATTGCTGATTGCCCTGT TTCTTGAACTCAATATTCATCAGCTTTCGCAATTGCGTGGACAAACTCCAGGCTGTCTAATGCTACAGACAATTTTTAAC CTGTATGCAAAGTATGTCAGCCATGAGCCTTTATCTGAATAGCATGTTTAGTTCTGCAGTTAAAAGCCTTATAATCACTT CTGAAGAGAAACTACAAAGTGTAGCTTCTGGTTACCGCACTTTGGACAGAATCTAAGTCTAAATTAGAAAAAGGATCCAC AAGAACGAGCAACTAATCCCATTCTTGATCCAGCTGAATGGGAAGAGCTCTTTCAGGAACATATAAAGACGCTTCAGCCT TCAAGAAGTAAGTGATAAGAGAGCTTAAAGGAAGGTGAAATATTGTATTAAACTTAATGAATGTCCAATAAGTGACAGTG TCTGCTTGAATGGTGGTTTTTTATGGCATTCCCTTTTGCTATGCCTTTGCTTTCTCTATATATATTCTTCAGTGATAAAT GACAGAATGCTTGAAGTGTTAAGAGAAGGATTAAGTGACAGCATGAGCAGTATTGCATTTTTGGTTAACATGTGTGCTAC TCTAACATCAGCACACGAGTTTAGAGTTCACGTCTTGACTTCTGAAGCTGTATCTGAAGAAACTGGCAATGGGAATACAG TGCTTAATTCATGGTCTAAAGCTAAAAGTCGTTTAAAAGTTGATTATATAACAAGGTTCCAGGAACAGAAAGAGAAGGTG GCTCCGACATGCACTCATCTCATAGTTCAACAGAAGAGAAGATGCTCATAGGGTACATCTTTTGTTATGTTTTTTCTCTC CTCTCCTTTGCCTTAGACTAGGTTACTTTACTTCAAAGTCTGATAGTATAATTCAGAACAGAATAACACCGCACTGAATC GTCCATAATAATAAGTGGAGATTTTACGACCCATTTATTATGTTCTGTTAGTATAATTTATTTTAGCAAAAATGCATATG GTTCATCATGTTCTTACCATTCTGTTCACCAATGTTAAAGAAAAATATTGAGCGAAAAAAAAAGATTAAAACTTCTTAAT TTATTTTGTAC
CDS sequence (LotjaGi3g1v0526600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGGGAACCACGTTTTGGCGTGTGAGCAGCATCCTAAGCCAACTCTCTTCCATGTCGGAACTGAAACAACTTCAAGC CATGATCACCAAAGCAGGCTTCGACACTCACATTCCTTTTAACACAAAGTTGATATTCTTTTCAGCACTTTCTCCAATGG GAAACCTCTCCTATGCTCATTCTCTTTTCCAACAATCTTCCATGGTCAACAACCCCTTTGCCTGCAACACCATGATTCGT GCTTTCGCCAACAGTCCCTCCCCTCTTCAAGCTCTGCACATTTACAACCACATGAGAAACACCAATGTTGTCTCTGACAA CTTCACCTACAATTTTGTCCTCAAGGCATGCTCCAAAGCTTACAAGTTCATTCAAGAATGTGGGCAGTGTGATGAGGTGG CTGTTGTTTCTAAAGGACGTGAAGTTCACTGCACTGTGGTTAGAATGGGGTTTGAACAAGACCCATCTGTTCAAAACTCC TTGCTTTATATGTACTCTCAATGTGGGTTGGTCCCGGTTGCCCAACACCTGTTTGATGAAATGAGTGAGAGAAGTTTGGC TGCTTGGAATATCATGATATCAGCGTATGATCGTGTTAATGATTTTAAATCAGCAGATTACCTTTTTGAATCAATGCCGC AGAAGAATGTTGTTTCGTGGAACACTGTGATTGCGAGATACATTAGGTTGGGTGATGTTGAGGTTGCGAGAAGGGTGTTT GGGTTAATGACGGAGAGGGATGCGGTGTCATGGAATTCGATGATTGCTGGTTGTGTTTCTGTTAAGGATTATGCAGGAGT ATTGGGGCTATTTTCTGAGATGCAGAATGCTGAGGTAAAACCAACAGAGGTAACACTTATATCAGTTCTGGGTGCCTGTG CTGAAACGGGTGCACTTGAGATGGGTGAGAAGATACATGAGTCTCTCAGAGTGTGTGAGCATAAGATTGAAGGGTATTTA GGTAATGCCCTGGTGAATATGTATTGTAAATGTGGGAATTTGAGCTCAGCATGGGAAGTATTTTATGGGATGAAGATGAA AACTTTGAGTTGTTGGAATGCAATGATTGTTGGTTTGGCTGTCCATGGTTACTGTGAGGAGGCCCTGGAATTGTTTTCAC AGATGGAACAGAGGCTTGGTAGTATTAGGCCGAATCGGGTAACGTTTATTGGTGTTTTGGTTGGCTGTAGTCATAAGGGT TTGGTCGATAAAGCAAGATGGTATTTTAATCGGATGGTAAACCAGTACCAAATCTTGCCTGATATCAAGCATTATGGTTG TATGGTTGATCTTTTAAGCAGATGTGGTTTGTTGGAAGAGGCCCATCAGATGATAAAAAATGCTCCTTTCCAAGATAGTG CTGTTTTATGGAGAACATTGTTGGGTGCTTGTAGAACACAAGGTGATGTGGAGTTGGCTAAGATATGCTTCCAACAACTT GCCAAACTGGAGCATCTAACAGATGGAGATTACATGTTGTTATCTAACATTTATGCTGAAGCTGAGAGATGGGATGAGGT TGAGCAACTAAGGAGTGAAATGATAGATTTACATGTTCCTAAGCAAGTTGGCTACAGCCAAATTGGTATAAATGAATCTG ATAAGGTTCCCTGCACAAGCCATTGCTGA
Protein sequence (LotjaGi3g1v0526600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMGTTFWRVSSILSQLSSMSELKQLQAMITKAGFDTHIPFNTKLIFFSALSPMGNLSYAHSLFQQSSMVNNPFACNTMIR AFANSPSPLQALHIYNHMRNTNVVSDNFTYNFVLKACSKAYKFIQECGQCDEVAVVSKGREVHCTVVRMGFEQDPSVQNS LLYMYSQCGLVPVAQHLFDEMSERSLAAWNIMISAYDRVNDFKSADYLFESMPQKNVVSWNTVIARYIRLGDVEVARRVF GLMTERDAVSWNSMIAGCVSVKDYAGVLGLFSEMQNAEVKPTEVTLISVLGACAETGALEMGEKIHESLRVCEHKIEGYL GNALVNMYCKCGNLSSAWEVFYGMKMKTLSCWNAMIVGLAVHGYCEEALELFSQMEQRLGSIRPNRVTFIGVLVGCSHKG LVDKARWYFNRMVNQYQILPDIKHYGCMVDLLSRCGLLEEAHQMIKNAPFQDSAVLWRTLLGACRTQGDVELAKICFQQL AKLEHLTDGDYMLLSNIYAEAERWDEVEQLRSEMIDLHVPKQVGYSQIGINESDKVPCTSHC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 22 | 127 | 106 | 1.8E-6 | ||
| ProSiteProfiles | 71 | 105 | 35 | 8.659 | ||
| Pfam | 72 | 119 | 48 | 1.0E-7 | ||
| ProSiteProfiles | 106 | 142 | 37 | 5.163 | ||
| Gene3D | 128 | 215 | 88 | 1.7E-13 | ||
| PANTHER | 136 | 220 | 85 | 3.5E-98 | – | |
| ProSiteProfiles | 154 | 184 | 31 | 8.1 | ||
| Pfam | 159 | 184 | 26 | 0.04 | ||
| ProSiteProfiles | 185 | 219 | 35 | 9.405 | ||
| Pfam | 188 | 217 | 30 | 0.024 | ||
| TIGRFAM | 188 | 217 | 30 | 0.0019 | ||
| Gene3D | 216 | 315 | 100 | 3.1E-20 | ||
| Pfam | 218 | 246 | 29 | 3.4E-4 | ||
| TIGRFAM | 218 | 247 | 30 | 2.4E-5 | ||
| PANTHER | 220 | 317 | 98 | 3.5E-98 | – | |
| ProSiteProfiles | 220 | 246 | 27 | 5.952 | ||
| Pfam | 247 | 294 | 48 | 6.3E-8 | ||
| ProSiteProfiles | 247 | 281 | 35 | 10.567 | ||
| TIGRFAM | 249 | 283 | 35 | 6.8E-6 | ||
| ProSiteProfiles | 282 | 316 | 35 | 6.073 | ||
| PANTHER | 314 | 514 | 201 | 3.5E-98 | – | |
| Gene3D | 316 | 532 | 217 | 2.8E-33 | ||
| ProSiteProfiles | 317 | 347 | 31 | 7.958 | ||
| Pfam | 322 | 347 | 26 | 5.0E-4 | ||
| TIGRFAM | 322 | 345 | 24 | 6.7E-4 | ||
| ProSiteProfiles | 348 | 378 | 31 | 9.164 | ||
| TIGRFAM | 351 | 378 | 28 | 1.5E-4 | ||
| Pfam | 351 | 377 | 27 | 9.2E-7 | ||
| ProSiteProfiles | 385 | 415 | 31 | 7.476 | ||
| Pfam | 387 | 413 | 27 | 0.047 | ||
| ProSiteProfiles | 421 | 455 | 35 | 7.026 | ||
| Pfam | 425 | 446 | 22 | 0.32 | ||
| ProSiteProfiles | 487 | 521 | 35 | 6.643 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0526600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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