Transcript — View — Lotus Base

Overview

Field	Value
Gene ID	LotjaGi3g1v0526700
Transcript ID	LotjaGi3g1v0526700.1
Lotus japonicus genome version	Gifu v1.2
Description	Anamorsin homolog; TAIR: AT5G18400.2 Cytokine-induced anti-apoptosis inhibitor 1, Fe-S biogenesi; Swiss-Prot: sp\|B7FNA9\|DRE2_MEDTR Anamorsin homolog; TrEMBL-Plants: tr\|I3S951\|I3S951_LOTJA Anamorsin homolog; Found in the gene: LotjaGi3g1v0526700
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr3:94310381..94314725) extracted from Lotus japonicus Gifu genome v1.2.

ATTGCGTTCTCAAATTAAATTTCAGCAGCGAGTCGAGTCGAGTCGAGTCGGTCTCTAATCTCTCTTCCTCTGTCTCGAAG CTTCCATCATATTCCAACAATCGCAATGGTTCGTTTCGTTCCCCTCCTCTTCGATTTCGTGGACATTCATCTACTCCTTC AAATCCCTAAATTTTTGCGCTACGACGCCATTATACCAGTTTTAATTTACCCTGGATTCAATTTTATCTTGCAATATTTT TGAATTTCGTAGGACGCTGCAAAGATCGGTGGTTCTTTATTGGCTTGTACTGATGAAGCGGTTCTCCCTGTCAGTCAAGT TTTTGATGCAATCAAAGAACTTGGGAATCAAGGGGTTGATGAGCAATGGAATCCTCTCGTTATCACATCTGCATCATCAC TCAGTATTTCCTTCACCTCCTTTTAATTGTTGTTTTTCTTAGTAATCTATGCTGGTTTGGTTTTGTTTGTGATATATGTG ATATTGTTTTTAGGGTACTTCGTTTTTTAAATAAAACCAGTAAATTATATGTTGCTATTGGTTACATCTTGCTTGACTAT AAGTGCTTATGGTCATATGACATAAGCGCCTATTCATAAGCTATTTTTGAAAATTTATTGAAATAAATTGAAAATAAACT ATATATAAGTATAAGCTCTTTTTCATAAGCTAGAAAGCGTTTCACCCCTTATCAAGGGGAACTATTTCACCACTTATTCC TGAGTAGCTTATGAAAATAAGCTCAAAACAGCTGATGGTAGGTCATAAGCTGTTTGCATAAGCACTCCCAAACACATACA CAAGCGCTTATGCTATCAGATAAGCTCTTCCAAACGGGGCCTATGTCCCCTTTTAAGGGATTTTACTATCAGCTTCTGTT GTTACTTGTAACATAATATTTGGAAATCAAATTTCATGCTGTGAATTAATATATAAGTTAGGCTTCTACACAATTTAGCT CCAATTTATGTTTTAAAATTTATAATTCAACTGCCTTGTTCCTGGAGTTGATGTCTGACTCTATTGTAGTTAGTACATAT TAAAATGCTGATGGATGAGGATGCATAATGGCTTGTGAATTGTGATATAGGATTTTAATGCTTGGGGTGGTGGGTCTGAG AAAACTGGAAATAGCCAGTTCTTCTTGTGTTCTATCTGATTCATTCAATAATGTATAAACCCATATTTATTGTTTGTTGG ATGGACTATGGTATTGTTTTTCTCGCTTAAAAAATATACAATTTTACATTTTGCATGTATATTATCTTTTATTTAATTGT AGCCAAAGAAACCAATTTTTGTTATATTCTATTGCAACTTCAGGCAAGCTGCCAGTGGAGTCTTCCTCTGTGGATGTGGC CATTTTAATCTGGCAGTCACTTGATTCTCCTGTGGATCAGCTGGTTCAAGAAATTCTTAGAGTGCTAAAAGCAGGTGGGA CAACTCTTATTCGCAAGTCATCTCAGTCTGGTGTGGGTTCAGTTGATAAGGTAATGGCAGCATAGATTGTGCCTGATTGA GTTTATGTTGTTGTACATGGTCTGATTTTTTACCATTGTCCTTACAGGCGATATCTGATCTTGAGAGCAAGTTATTGTTG GGAGGGTTTACAGAGACACAGGTTTTACAATCAACTGTCCCGTCAGGCAGCAAATCTTCTTGGGTAAGTTTCATTTTCTG GTGTCCATCTTTATTCATTGTTGTTTTTTCTTCAATCAATCTTTTCATTGTTTTCTCATCTTTGGTTTCTTGTACACTAG AATACATTTGAAACGTTTCATGAATGGTTTATTGTTTTCTCGTGTTTGGTTGAATACAACCGAAATGCATGGGTCAAGTT GAATAATAGTCTGACATGTTTTTCACTTTGAGTAGTCATTAATTTCTGCTTGGACCTTCTTCTTTTATCTTGATGTTTTT TGTTGTCTTTCCAGAAAGTTTGTATTCTTGTTTCTGGATGAGTGGAGTATAGGCATGAGTCATCTAAAGTCTTTTTTTTT TTCCCCTTACAAATTCTAACCATCAATATGGTAGCAGACCCATGATTAAAAAAACAGGTGTATAGTAGAAAATAAAAGAG TGGGTGGGGGATAAGCTAGGCCCGTTTGTAAAATAGAGTTAGTGACAGGTTGTTAGGAGGGTTTTTAGAAGTAGTTATGT GAATCCCTATTTGTTCTATGGAAGAGGGGAGAGGAAGGGGACTCTTGGCAGAAAGTGAGGACAGTAGGAGAGACAGAGCC TCTAGAAGTGCTCTGAGTGTGATCAACATTTTGTATTCATTTTATTCAGTTTGAACCTACATTGGGTCCTGTGCTGAACC ATTGTTCTTGAATATAATCAGTCTCTTTCTTATTTCATTTTCTTACCTGTAACACAATATGCTCTGTATTATTACATAGG TGAAAGCTAAAAAGCCTTCATGGAAAATTGGTTCATCTTTTGCATTAAAGAAGGCGGTGAAGAGTTCACCTAAAGTGCAA ATTGATTTTGATTCGGATCTGATCGATGAAGATAGTCTTTTGACTGAAGATGATCTAAAGAAACCACAGCTGCCGCTTGG TAAAGAGTACTTTTCTATTTCTGTCCTCAATCAGCAGTATGTATATAAGGCCATTAGCTAACTTGTTTATGCTTTAGGTG ATTGTGAAATTGGAAGTACTAGAAAAGCCTGCAAAAATTGCTCTTGTGGGAGGGCTGAAGAAGAGGAAAAAGTATTGAAG TTAGGATTGACAGCAGAACAGATTAATAATCCTCAATCATCTTGTGGCAGTGTATGTCTTTCTTTTCTTGGGCAACACAG TTCATTTATGCTTTCTTCATCTACATTTGTATTGTTCAATAAGAACTCATTTTTGCTGTATGTGCATTTTAAGATAAAAA GTTATAACTCCTTAGAAATTTAGATTTATATAATGTTTTCTTTCCTTGTTCCTACAGAGTTTCGGAGTTTGACAATGGTT TGGTTAGATAGCTCCACTTTTTTACTTTAGCTTAGATGATTTATAGAAGCGTAGTAACGACCCCGCCTTCTGTTCATGTC TTATAATTAAATTTCGTGAAACAAAAGAGCTAGCGCTGCATCATAAACCCTTTCCCTCTCTTTTCCCACCTGTTTGGTTT CATATAGCTCAGTGATATGGATTTAACGCTCACTTGCTCTACTGCCATTTTTTTCAATTTACATATGGAAGCTTGGCTGA GTGTGCAATTTTGGCATTAGTGAGTTTTCTAAATTCATGTAACCAACCTCACCTAGTTGGAAAAGACTCCTGTTGTTTTA AATTCTGTCGCTGCCCATAAACCCAACTATATTATTGTATCTATGATTCTTAATATCTTGTACTTAAGAAAATGGAAACA TTGAACCTTGATCGTCATTGTCATCAAGCCTTTTCCCACTAAGTAGGGTTGGGTTGACTTGACGAATCAATCATTGAACA TTAATTTCAACTAACCATTCAATATTTAACGGAACATGAATTCTAAGATTGGTTTGAATTGTGGTCAATGTGACTTGGAC AATGAGACTATAGAATAGCCTTCAATGCTATTTCAGTTTTTCTTCCATAGTTGGCTTTGCCCTGAAAAGTTGCTTTTGGT TTGCAGTGTGGGCTAGGGGATGCTTTCAGGTGCAGTACCTGCCCTTACAAGGGACTTCCTGCCTTCAAATTGGGCGAGAA GGTACATTTTCTTTGGTCCCTCTCTTGAGCTATTTGGTGTCATTTTTTTGGAATTTCCTATACTCATGGAACGGTTGTTG CATAAGTCATTCTTTTTCTTTTTGCAGGTGGCAATTTCTGGTAACTTCCTTGCTGCAGATTTATAATGGATGAAGTAGAA TTAGGCTTTGACATGGGAAGGGTAAAACAGTATTTTTAGATGTATGGGGTTGTTATAAGTTATGTTAATACTTGAAGAAC CAACTAGTCCAAATTGTTGGATGCCTTTTCAAGTGTGGTGACTTATGAGAGATTCATTCATGTTTTTACAGCTACTATAG ATGTTCAATGTCATTGTCTCTCCTTGCTTCTCTAAATGTATGCTTAAAAAATAATTTCTCTCTTTATGATAAGGTTGTAG GCTGTGTATGCTGGGTTATAAAAGTGATGCCACTAGAGCTTGTGATGATTTGATTATTTAAATTTTAATTTGAATATTTT AACATTTTAAAACTTTCATATATGCGAGTGTCAATTAAATCTTGAATGCTCTGTAAATGATATGCTAATTCAACGATGGA TTGAACTTATGAAGTTAATATCAACTCAACAATTAAAAGATTTAAATAATATTAATAAAATAGGCATGTTCCTAAATTCA TTTGAAACAAATTATGAAGTGTTTT

Download Genomic Sequence

CDS sequence (LotjaGi3g1v0526700.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGACGCTGCAAAGATCGGTGGTTCTTTATTGGCTTGTACTGATGAAGCGGTTCTCCCTGTCAGTCAAGTTTTTGATGC AATCAAAGAACTTGGGAATCAAGGGGTTGATGAGCAATGGAATCCTCTCGTTATCACATCTGCATCATCACTCAGCAAGC TGCCAGTGGAGTCTTCCTCTGTGGATGTGGCCATTTTAATCTGGCAGTCACTTGATTCTCCTGTGGATCAGCTGGTTCAA GAAATTCTTAGAGTGCTAAAAGCAGGTGGGACAACTCTTATTCGCAAGTCATCTCAGTCTGGTGTGGGTTCAGTTGATAA GGCGATATCTGATCTTGAGAGCAAGTTATTGTTGGGAGGGTTTACAGAGACACAGGTTTTACAATCAACTGTCCCGTCAG GCAGCAAATCTTCTTGGGTGAAAGCTAAAAAGCCTTCATGGAAAATTGGTTCATCTTTTGCATTAAAGAAGGCGGTGAAG AGTTCACCTAAAGTGCAAATTGATTTTGATTCGGATCTGATCGATGAAGATAGTCTTTTGACTGAAGATGATCTAAAGAA ACCACAGCTGCCGCTTGGTGATTGTGAAATTGGAAGTACTAGAAAAGCCTGCAAAAATTGCTCTTGTGGGAGGGCTGAAG AAGAGGAAAAAGTATTGAAGTTAGGATTGACAGCAGAACAGATTAATAATCCTCAATCATCTTGTGGCAGTTGTGGGCTA GGGGATGCTTTCAGGTGCAGTACCTGCCCTTACAAGGGACTTCCTGCCTTCAAATTGGGCGAGAAGGTGGCAATTTCTGG TAACTTCCTTGCTGCAGATTTATAA

Download CDS Sequence

Protein sequence (LotjaGi3g1v0526700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDAAKIGGSLLACTDEAVLPVSQVFDAIKELGNQGVDEQWNPLVITSASSLSKLPVESSSVDVAILIWQSLDSPVDQLVQ EILRVLKAGGTTLIRKSSQSGVGSVDKAISDLESKLLLGGFTETQVLQSTVPSGSKSSWVKAKKPSWKIGSSFALKKAVK SSPKVQIDFDSDLIDEDSLLTEDDLKKPQLPLGDCEIGSTRKACKNCSCGRAEEEEKVLKLGLTAEQINNPQSSCGSCGL GDAFRCSTCPYKGLPAFKLGEKVAISGNFLAADL

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
Hamap	MF_03115 View details on MF_03115 Search for proteins/transripts with this domain View external data on MF_03115	6	274	269	19.757	IPR007785 Show description in modal box View details on IPR007785 Search for proteins/transripts with this domain View on EBI InterPro Service
PANTHER	PTHR13273 View details on PTHR13273 Search for proteins/transripts with this domain View external data on PTHR13273	6	273	268	4.6E-101	IPR007785 Show description in modal box View details on IPR007785 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:3.40.50.150 View details on G3DSA:3.40.50.150 Search for proteins/transripts with this domain View external data on G3DSA:3.40.50.150	17	154	138	4.9E-20	–
Pfam	PF05148 View details on PF05148 Search for proteins/transripts with this domain View external data on PF05148	49	96	48	5.8E-5	IPR007823 Show description in modal box View details on IPR007823 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF05093 View details on PF05093 Search for proteins/transripts with this domain View external data on PF05093	195	265	71	1.5E-16	IPR007785 Show description in modal box View details on IPR007785 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0005730 View details of GO:0005730 AmiGO InterPro QuickGO	Cellular component	Nucleolus	A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.	Subterm of View details of GO:0043232 View details of GO:0044428 Part of View details of GO:0031981
GO:0005737 View details of GO:0005737 AmiGO InterPro QuickGO	Cellular component	Cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.	Subterm of View details of GO:0044424
GO:0008168 View details of GO:0008168 AmiGO InterPro QuickGO	Molecular function	Methyltransferase activity	Catalysis of the transfer of a methyl group to an acceptor molecule.	Subterm of View details of GO:0016741
GO:0016226 View details of GO:0016226 AmiGO InterPro QuickGO	Biological process	Iron-sulfur cluster assembly	The incorporation of iron and exogenous sulfur into a metallo-sulfur cluster.	Subterm of View details of GO:0006790 View details of GO:0031163 View details of GO:0051186
GO:0051536 View details of GO:0051536 AmiGO InterPro QuickGO	Molecular function	Iron-sulfur cluster binding	Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms.	Subterm of View details of GO:0048037 View details of GO:0051540

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0526700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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LotjaGi3g1v0526700.1