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LotjaGi3g1v0529800.1

Overview

Field Value
Gene ID LotjaGi3g1v0529800
Transcript ID LotjaGi3g1v0529800.1
Lotus japonicus genome version Gifu v1.2
Description Gag polyprotein; TAIR: AT3G02820.1 zinc knuckle (CCHC-type) family protein; Swiss-Prot: sp|Q6DBR4|TIPIN_DANRE TIMELESS-interacting protein; TrEMBL-Plants: tr|A0A0L9V851|A0A0L9V851_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0529800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:94683813..94687433) extracted from Lotus japonicus Gifu genome v1.2.

CTTTCCCTTTCTCTTTATTTCCTATCACTTTTTTTTATATCCAAACAATTCCAGTTTTAAAACATAAAATAAAAACTAAA CACAATTCCATTTTTTAAAAATAAAATAAAAAAAATTAAGAGAATCCCTCGCATGTTTCCCGCCATTTCCCGCGAAATAA AATCCCTCCCTATTTTTCATTTCATTTCACACATGACAGAGGTGAGTGTGACTGAGTCGTGACCGAGTTGCGAATTGAGG AAGAAAGAAGCGGAACAATGGAGGGTTCAGGACCAGGATCGGGATCAGGAACAGCAACAGGTTGTTACAAGTGCGGCAGA CCAGGTCACTGGTCCCGTGATTGCCCTTCCTCCGCTCCCAATTCCAATCCCAACCCTAACCCTAACACCACCACCACTCC CAATCCTCTCCTTCCTTCTTCCTCCTCCTTCAAACCCAGATCCGCCGTCGAGAAACCCAAAAAACTCCCCCGACAAAGGC CCAAACTCACCCCCGAGCTTCTCCTCTCCGACGACGGCCTCGGTTACGTCCTCCGCTATTTCCCTCAAGCCTTCAAATAC CATGGCCGCGGCCACGAGGTAATCAACCACCGAACTTAATCTCATTTTATTGTTGAAATTTTTTGTTTCTGATTTGTGTG GTTGGTTGGTTGGTTAGGTTCGTGATTTGGGGAACCTGCTTCAGCTTTATTCCGATTGGCACTCTCGCTTGCTCCCTTAT TTCCCTTTCAATCAATTTATTCACAAAGTCGAGAAAGTCGCTGCTACCAGACGCGTCAAGGTACGACTCTTTCTCTTCAA TTTGTACCTGCACCATCTTATTAGTCCTATTAGAAGATGATTTTAATCAATCTGATCCGATTATTGAATTGTACTTAAAT TACTGTGTTGATATTATATATGCTGATGAATTGGAGATCAGATGGTCCATTTTTGTTTGTTTGTTTGAAATGTCTGATAT ATGTGAACTTGGAGATATATTTATGGAATTGAAGTAATTCATGTTATTGTAAAATTTTATATGAGCATGATGATAGTTTT TAGTTTATAAGTGGATTTGGTGAAATGTTTTGGTCAAATGATGCTTTTAGCAGTTTTAGTGTGGTGTAGTAGATTTCAGC AGTATATGTTTATCAAAGAACCTAATGTTAAAAGTGCCATAGTTGAAATGATTGGAGTGATGAGATCAGCTGCAAGATTC CGGACATAAACTTTATCTCTGGAAGTTAAAAGTTGAACTTTAATGGACTAGAGATCAGATGCTGAAATTTTGCATGCCTA CACTGTGGCTAGAAGTCAAATGAATGTGATTTAGGGAGTAACTAATAGCTGAATGCAAATAATAGAGATAACAATAAGGA CTTGGGCTTCAATTATCCTTTGACTCAAAAGTAAAATCTCAGAGGCATTTCTGTAGCCAAAGCCCATTCAAGGGAACAAC TGATCATGGGTGCTTGCTCTTTGACCAGAAATAGTTCATTGATGTTGAATACGCATATATTAGCTTTATGTTTTAGTCCT TGAACGCAACGCCCATGTTTCCACTTTCCAGACCTATTTTCTATTAAATGTTTTCAGTTAGTTCTTAAAATGTGTATGAC CCATCACACATATATGAAAGGTTCCATTTCTTCTGTTCTGTTTCTACATGCTTTTATATTCCTTTGATATACTTTGTCTT TGCTGTGTATGCTCTCTCTCCATCACTCTATTTTCAGTATTTGTTGAGAAGGCCTGTCAGTTGCATGTCTATGTGCTTTC TTGAATGGTGCATGCATCCTTGCTGCTAGTCTTCCACCCTCTACAAAAGTAAATTCTTACTGGTTCTATGTTTTTTATAA TGCCTTCTATAACCAGACTTGCCTTAGAGAATTGAGAGAAAGAGTTGCAAATGGTGGGGATCCAACAAAATTGCATGAAC AATATGTTGCTCAGGACATTCCAGCTGATGAACAAGGTATTTACTTACTCAGCAATTTGCTATTAAGGTCTCAAGATGCA TTAGTTGCATTGTACTTACAAGTTCTATGAATATAATTTTTAGAAAACATCATTGAATAGAAAAGAGAATTATTGCTTAT TACTTTCATTTTGGGACAATTATCTGCTCAATGAGTACTTAATGAATAGTACTTATTGACTTATCTATCTCTACATAGTT TTTCAGGAATATTTTTCCAATAATACCTATCTCTTAATTTTCCTTTCTTCAATTACATATACATCTTGAATGTCAAATTG CATGAGGTAGGATCTAATGATCAACGATTTGATCCTTGAAACTCTTTGGCTAATTCTAGGTAGCCATAGAAAATGCATAA CTTTTGACAAACTTCCAACCATATGTCAAATAGGGTAGCCAGACCTATTTTCCAATATAATTCACTTGAACATCACTAAG ATGGTTGTGTAGAATATGTTTTTATCTATTTACATTCTTAAGCAGCTTTGCCATTATATCCTTTTGTGTTGTTTAGCTGT AGGCACAGAAGACGGAGAACCCAGTCATCAAGAGAGAGATGTGTTTGCAGAATCTGAAAATGTTAATGACATTCAAGAAG ACATGCTTAATGATGTATATGATAAAGCTACTGAAGTAAGTTTAATTTCTTTTAAACACAGTTTGTTTGTTATCATGCAA TAAAATATTTCTATCGGTTAAAACACATTCGAATTTTCGCTTGGTGAAAGAAAATCTTTCAATATTTACTTAAATCAATC AGGGAGAAAAGAGGTAAAATCATCTTCTAAGGTTCCGATTCTCACAAATTTATCAGAAATTTGAATTCCTTGGAAAAAGT TTAAGTCATTTTCAGTTGTTATCCTCATCCAGTTGCATACTGAATACAGTAACCCAAGAGTAACAACACCTCCTTCATAC AATTTCCAGCTCTTGTATGCTTTCATGATACTACTTGAGCATATGGTTCATATTCATTTTATCTTTCCTACTCCTCTTGT CCTTGGTTCCTTTATATTTTTGCCTTTGTTATGAAGTCAGATGCCAATATCTCTTCAGAACATTATATATTTAGTGAAAC AATTGTTGCAGATTACTTTATGCAAAAATAAAATAAAAAATCAATTAAACCAAATTAAATATTTGTAAGCAAGGAGCTGA TGTTGAAGTCTTAATGTCAGTATTATGTCCCCATTTTATTACAGGAACCTTCTCAGTCCACACTCAATGTTATTGGCGCT AGTGCACCTTCCAAAAGTAGCGTCATTGAAAAAACATCAAATGAAGTTACAAATAATGTAGCCAGCACGTCAGGAAAAGA TGAGATAACAGAAGAGCAGAGAGCTCGTATGGAAGCAAATAGGTTGAAGGCACTAGAAAGGCGTGCGGCTCGAGCTGCCT TGTCACAGGCCTCCTAATCTCAATGTCAAATGTCAATTGTAAATTAGAACATTATTGTGGTCTCCTACTAGGCGTTCAAT TGACGTTAAGTCCCAAGAAGAGTTGGTTTTTTTATGGTAATGTTTTACATGATGTGATCATGTTAGTTGATTAGCTTCTT CTTTATCACAAGCAGATTCTAAAATCACTTTTCTATATTTTTCCTGATTCTTTTAAGAATTATTGATTGTGCCAAAAGTT TGATTTTCTGGTTTATTAACA
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0529800.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAGGGTTCAGGACCAGGATCGGGATCAGGAACAGCAACAGGTTGTTACAAGTGCGGCAGACCAGGTCACTGGTCCCG TGATTGCCCTTCCTCCGCTCCCAATTCCAATCCCAACCCTAACCCTAACACCACCACCACTCCCAATCCTCTCCTTCCTT CTTCCTCCTCCTTCAAACCCAGATCCGCCGTCGAGAAACCCAAAAAACTCCCCCGACAAAGGCCCAAACTCACCCCCGAG CTTCTCCTCTCCGACGACGGCCTCGGTTACGTCCTCCGCTATTTCCCTCAAGCCTTCAAATACCATGGCCGCGGCCACGA GGTTCGTGATTTGGGGAACCTGCTTCAGCTTTATTCCGATTGGCACTCTCGCTTGCTCCCTTATTTCCCTTTCAATCAAT TTATTCACAAAGTCGAGAAAGTCGCTGCTACCAGACGCGTCAAGACTTGCCTTAGAGAATTGAGAGAAAGAGTTGCAAAT GGTGGGGATCCAACAAAATTGCATGAACAATATGTTGCTCAGGACATTCCAGCTGATGAACAAGCTGTAGGCACAGAAGA CGGAGAACCCAGTCATCAAGAGAGAGATGTGTTTGCAGAATCTGAAAATGTTAATGACATTCAAGAAGACATGCTTAATG ATGTATATGATAAAGCTACTGAAGAACCTTCTCAGTCCACACTCAATGTTATTGGCGCTAGTGCACCTTCCAAAAGTAGC GTCATTGAAAAAACATCAAATGAAGTTACAAATAATGTAGCCAGCACGTCAGGAAAAGATGAGATAACAGAAGAGCAGAG AGCTCGTATGGAAGCAAATAGGTTGAAGGCACTAGAAAGGCGTGCGGCTCGAGCTGCCTTGTCACAGGCCTCCTAA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0529800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEGSGPGSGSGTATGCYKCGRPGHWSRDCPSSAPNSNPNPNPNTTTTPNPLLPSSSSFKPRSAVEKPKKLPRQRPKLTPE LLLSDDGLGYVLRYFPQAFKYHGRGHEVRDLGNLLQLYSDWHSRLLPYFPFNQFIHKVEKVAATRRVKTCLRELRERVAN GGDPTKLHEQYVAQDIPADEQAVGTEDGEPSHQERDVFAESENVNDIQEDMLNDVYDKATEEPSQSTLNVIGASAPSKSS VIEKTSNEVTNNVASTSGKDEITEEQRARMEANRLKALERRAARAALSQAS
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:4.10.60.10
2 46 45 4.8E-8 –
SUPERFAMILY
SSF57756
5 34 30 3.01E-8
IPR036875
PANTHER
PTHR13220
10 288 279 6.4E-81
IPR040038
PANTHER
PTHR13220:SF11
10 288 279 6.4E-81 –
Pfam
PF00098
15 31 17 2.4E-8
IPR001878
SMART
SM00343
15 31 17 3.4E-6
IPR001878
ProSiteProfiles
PS50158
16 31 16 11.482
IPR001878
MobiDBLite
mobidb-lite
26 78 53 - –
Pfam
PF07962
76 157 82 9.0E-25
IPR012923
MobiDBLite
mobidb-lite
232 259 28 - –
MobiDBLite
mobidb-lite
232 266 35 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000076
Biological process DNA replication checkpoint A cell cycle checkpoint that prevents the initiation of nuclear division until DNA replication is complete, thereby ensuring that progeny inherit a full complement of the genome.
Subterm of
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0005634
Cellular component Nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
Subterm of
GO:0006974
Biological process Cellular response to DNA damage stimulus Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism.
Subterm of
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of
GO:0048478
Biological process Replication fork protection Any process that prevents the collapse of stalled replication forks.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0529800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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