Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0530700 |
| Transcript ID | LotjaGi3g1v0530700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Peptidyl-prolyl cis-trans isomerase; TAIR: AT4G38740.1 rotamase CYP 1; Swiss-Prot: sp|Q8W171|CYP1_SOYBN Peptidyl-prolyl cis-trans isomerase 1; TrEMBL-Plants: tr|I3STY8|I3STY8_LOTJA Peptidyl-prolyl cis-trans isomerase; Found in the gene: LotjaGi3g1v0530700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:94759847..94762349) extracted from Lotus japonicus Gifu genome v1.2.
GAATAACCTTGTTAGGAGTAAATTTGTGATAACCCCACATTTCATCGAGAATTGATCATCGATATATTAATCCTCGTCGA CATTCATTTGGCCCACATGAACCCCCAAAAAAGTGATTCCAAAATACAAAATTTTTAAATTAAAAAAAAAAACGAAAAAT ACACAGTGAATTAAAGCACGAAGCGGCGTCGTTTGTTTGTGCATGAAAAGTCCACACCCATAAGCATATCCGCCTCCTTC GATCCGCTCCACTAACCCTAGTTAATTCCTAACTCAACCATAGTTACATCACTCCATCACAACACACCACGTGTCCTGAT CCAACGGTGAATTCACAACGTCTTCAGATGCACGCGCCACTATAAATAACCTTCGTCCTCACGTTCATTCGCCAAACCCT AATCCCTTTTCACTCTTCATCACTCTCTCTGCATCCATGGCAAACCCTAAGGTTTTCTTCGACATGACCATCGGTGGCCA ACCAGCCGGCCGCATCGTCATGGAGCTTTTCGCTGATGTGACCCCCCGCACCGCCGAGAATTTCCGCGCTCTCTGCACCG GCGAGAAGGGAGTCGGCCGCAGCGGCAAGCCACTCCACTACAAGGGATCTTCCTTCCACCGTGTGATCCCTAACTTCATG TGCCAGGGAGGTGATTTCACCGCCGGGAACGGCACCGGAGGCGAGTCGATCTACGGCGCGAAGTTCGCTGACGAGAATTT CGTCAAGAAGCACACCGGCCCCGGCATTCTCTCCATGGCGAACGCTGGTCCCGGAACCAACGGATCTCAGTTCTTCATCT GCACTGCCAAGACCGAGTGGCTCGATGGGAAGCACGTGGTGTTCGGACAGGTTGTTGAGGGGCTGGATGTGGTGAAGAAT ATCGAGAAGGTTGGATCTAGCTCCGGCAAGTGCTCCAGGCCGGTGGTGGTTGCCGACTGCGGTCAACTCTAGACGATGTT GACTCTGTTCCTATGGTGGTGGCTCTGATCTAGACTATTTTGTGTTTTGAATTTCGGTGTCGTTTTATGTTTTATCGTTG TGCGTTTTAGGGTTTTTTGTGATGCTGCTCGCTCTTGATCGATCGTATCCAACCCTTTGGTATTTTGTACTTTGTCGTTC GTAGGGTATGAGTCATGTGATGAGATAAACTTTAAAATGATGAGCTACCTTTTAATAAATTAGGATTATTATTCACCTTA TTATATCTTTGATCTATGTTTACTTTTGTCGTTTTGCTTGTGAACGCTTAAAATATGCATGCTTGATTTTGCGATTAGTG TGATGTCATGTATTTTAATGCATTGGAATTCGATCCATGATATTGAAAATTCGAAATACTAGTTAGGTTTTTTGATTATA TGTATTGAATTATATGTATTGAATTGGGATGTTTTCAACTCTAGTGCGCATTAGCATCATATTCTTCCGAATAAAATTCA TCACTTTATGTGATTGGATTGATTGGTAGCGTTTGATCACGTAAATGATGAATTTTATTCTGAAGAAGAATATGATGCTA ATTACCTTGTTTTCTTATTCAACTATTATTGTTTTTGCGCATTTAATTTGTCCTTAATCAAAGTTATTCTGAATTGTGAT GTGTTGATGAACGCTAATTGCTCTGTTATCGTCATGAGTTTATGTTACTAGTGAGTAGTGATGTTACACGTGCTGATATG TGGCTGTGTGATCGTGTCTTGTGAATATGTGATGGAGGAGTAAGGAGAGTAGAAAATATCTGGTGGCATAAGCAAATATC ATCCACAATAATGATGTCGTGACCTACCACCGCACTTTTTCTAGCACGAGTTTTGAGTGATCATTATATTAATATTTGTT TATTTATTTTTTTGGTCGATGATGGCGATGCTCAATGCTTCAAGTTGGAGGCACCGATGCATTGGTCTACTTGTTGTGTA CATTATCATGGTTGGATATACGGTACTGTCAAAACCCAGTAATAGAAAAGTTATAAAAAAAATTAAGAATGAGATGAAAT TAAATGTGAGTTTGAATATTTTAAAACCTCAAATCAACATCTTACTTGTGATATTCATGCTTGAGTTAGGTAAACGATAT ATTTCAAAGACTTTGGAGAAGACCATGTTTTTTTTTGTTACAATTGGAAGACTACACAGCTAAGTCATGGCCAAGAAGGG GTATAATATTGAAAGGTAGGAACTTTCAAAGAAGAGTGTCATCTTTTGATGGAGTTGGATTCCAAACTGGCCTTGGAGTT GATCACTGTTAAGTGCCCTATTTCTCATCCATGTACTGATTTGGTTCAAGCTATATTTATTATTGCTGCTTTCGATTGTG ATGTGCGGTTCCATCTTGTGTTTAGGGAAGCTAATAACTGTGCAGATCACCTTGCTGGTCTTGGTCACAAGCTGTATAGG ATGAGTTTTAATGATAAATATGTTCCATACTCTTTGTTCTCCCTGATCATATATAATGTTAATGGGGTCTTGCACGCTAG ACTTGTTTAGTTTTCGCTATTTG
CDS sequence (LotjaGi3g1v0530700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAAACCCTAAGGTTTTCTTCGACATGACCATCGGTGGCCAACCAGCCGGCCGCATCGTCATGGAGCTTTTCGCTGA TGTGACCCCCCGCACCGCCGAGAATTTCCGCGCTCTCTGCACCGGCGAGAAGGGAGTCGGCCGCAGCGGCAAGCCACTCC ACTACAAGGGATCTTCCTTCCACCGTGTGATCCCTAACTTCATGTGCCAGGGAGGTGATTTCACCGCCGGGAACGGCACC GGAGGCGAGTCGATCTACGGCGCGAAGTTCGCTGACGAGAATTTCGTCAAGAAGCACACCGGCCCCGGCATTCTCTCCAT GGCGAACGCTGGTCCCGGAACCAACGGATCTCAGTTCTTCATCTGCACTGCCAAGACCGAGTGGCTCGATGGGAAGCACG TGGTGTTCGGACAGGTTGTTGAGGGGCTGGATGTGGTGAAGAATATCGAGAAGGTTGGATCTAGCTCCGGCAAGTGCTCC AGGCCGGTGGTGGTTGCCGACTGCGGTCAACTCTAG
Protein sequence (LotjaGi3g1v0530700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MANPKVFFDMTIGGQPAGRIVMELFADVTPRTAENFRALCTGEKGVGRSGKPLHYKGSSFHRVIPNFMCQGGDFTAGNGT GGESIYGAKFADENFVKKHTGPGILSMANAGPGTNGSQFFICTAKTEWLDGKHVVFGQVVEGLDVVKNIEKVGSSSGKCS RPVVVADCGQL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 171 | 171 | 4.3E-91 | ||
| PIRSF | 1 | 171 | 171 | 9.6E-81 | ||
| PANTHER | 2 | 171 | 170 | 7.4E-111 | – | |
| SUPERFAMILY | 2 | 171 | 170 | 5.84E-78 | ||
| PANTHER | 2 | 171 | 170 | 7.4E-111 | – | |
| CDD | 4 | 169 | 166 | 2.23768E-119 | – | |
| ProSiteProfiles | 7 | 170 | 164 | 45.913 | ||
| Pfam | 8 | 169 | 162 | 8.9E-49 | ||
| PRINTS | 24 | 39 | 16 | 5.0E-42 | ||
| ProSitePatterns | 55 | 72 | 18 | - | ||
| PRINTS | 60 | 72 | 13 | 5.0E-42 | ||
| PRINTS | 103 | 118 | 16 | 5.0E-42 | ||
| PRINTS | 118 | 130 | 13 | 5.0E-42 | ||
| PRINTS | 131 | 146 | 16 | 5.0E-42 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Protein peptidyl-prolyl isomerization | The modification of a protein by cis-trans isomerization of a proline residue. | ||
| Molecular function | Peptidyl-prolyl cis-trans isomerase activity | Catalysis of the reaction: peptidyl-proline (omega=180) = peptidyl-proline (omega=0). | ||
| Biological process | Protein folding | The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure. |
Expression pattern of LotjaGi3g1v0530700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…