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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0535600 |
| Transcript ID | LotjaGi3g1v0535600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 30S ribosomal protein S9; TAIR: AT3G49080.1 Ribosomal protein S5 domain 2-like superfamily protein; Swiss-Prot: sp|A9IVX6|RS9_BART1 30S ribosomal protein S9; TrEMBL-Plants: tr|I1LPC4|I1LPC4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0535600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:95242528..95246107) extracted from Lotus japonicus Gifu genome v1.2.
CTCACGCATTAGCTAAGAACATTTTTCTATGTATTGTTAAACGACGCCGACTTGAGCTCTTGTTTTCCGTAAACCTAAAT CCCAGCTTCGCAGCTTACACTCCCTCTCTCACTGTCACCAACCCACTCCGATCGCCACCTCTTCTCAGCTCAGATCGCCG CCGTCAACTCACCGGCGACACCGAGGCATGAATGAATGAATGACATCTTCATCTTCAACCAATCACAGTCACAGTGCTCA TCACCATGCTCTCTCGCTTAATCCCCAAACCCTCTCATCTCCGTCGCTTCTTCACTCTTCCATCCAAACAACCCCATTTC GCAAACTCACCCATCAACCCCTTCTTCACAATCGTCCCTAAACCCTTCTCTTCCCGCAGCAACAACAACAACAGTGGAAA TGGCAATGGAAATGGAAGGGGTCCGTTTACTTCGGGAACGTGGGGGACATTGGGTGATGAGAACGAGGAGAAGTTCGACG CATTCTTCACCGAAGATAGCGGAAGCCTCCCCGGATTGAACGAAGCGGAAGGAGGTACTGGGGAAGGTATTGGGGATAGT ACAGTTGCAGAGAAGGAGGAACCTTGGTGGTTGCAAGAGAAGGGTCTTGATGATAAAGATGAGGTTGATATATTTAAAGG GATTGACAAAGAAACTGAAGGCGGCGGCAATGTTGGTTTTGGTGATTCTGGTGGTGATCAAATTGGAGTGGGAGCAGAAT CTGAGAATTTCCAACCTTGGAGCTTGAAGGAGGAGGAGGAGGGAGAGGTTGATGTGTTTAAGTTCCCGGAGGATGTCGGC CCGGTGGAGGAGTTCGGTGCCGTGGATAGAACAAAAGAGGAGGCTGAGAAGCTTGAGAAGGAAGAGCAAGCTCTCACTGC CATTGTCAAAGGTTTTGATCCACTTTTTATTTTCTGTCAATGGCAAAACAGTTCTCATGATTTTTTTTATATTGAAGCAG TGTTTTGTAGCTTTCAATTGGCCATGATTCTGATTAATAGTTAAGCAATGAGGCATCGTAAATCACATATTTTGAATGTG GAAGTTGTAATAGGTGTTATGATTACATCACATGAAACTGAGTTATTACGAAATACGTCTTTATTTGCTGTTCTCAACGG TCACGAGTACACCCAGGATAATGTTGAAGTTAGTTATTTATATGGCAAAAATTTGTGACTTCATATTGTACATTGTAACA GTAGTTATTTTTGTTTATTTTGAGTTTATTCATATATGATATACCAATGTTGTAATGTCTCTTAACTACTGTAATTACAG GACCAAAACATGCTTTCGGTGATTTGATTGCTGCTTCTGGTATCACGGATGAAATGCTTGACAGTTTGATTGCCTTGAAA GATTTTGAAGGGATTGAGGGGTTGCCCCCACTTAGTGTAATAGAAGATATGCGCTATGAGAAGAATACTAGTAAATCCAC TAGAGCTGAAATTGAGCGTCTAAAGCAAGAGGAAGCGGCAAAAGCTAGAGTGAGACAAGTAGATGAAAAAGGACGCGCTT ATGGAACGGGAAGAAGAAAATGCAGCATAGCCCGTGTCTGGGTTCAACCTGGATGTGGTAAATTTGTAGTGAACGAGAAA GAATTCGATGTCTATTTCCCCATGCTCGAGCATCGTGCCACTCTTCTTCGACCTTTCTCTGAGACAAAGACATTGGGGCT CTGGGATGTCACTTGTACTGTGAAAGGAGGTGGTGTTTCAGGTAAATTGAAGGACGTCTAGTTTGTCTTTTATTTGAATT CCCATGATGCACCAGTTTCTTTCATTATATGATAATCTTTATTCATTTTACTGAAGATGCCTACTTGTGTCCTATGATTT TGTCAGCTTGTAATTGCTAATTAGAGTTTTTGTTTAGAGTTTGCGGACATCCTTCTGAGTCATTGCCATACCTTTTTAAA TTTCGAACAACTGTAAAAAGAATCCTATATGTTTGTTAAAATGATTGCATAGAGAGTGAAGTTGGGACTTGGAAGCATAG AATTAGTGAGAATAAGAAGTACCATGAGTGGTGTGGTGTCTTTTGCTCTAATGAAGGAGATAAAGCAGAGAGAGGGAGAG TTGTGTTAGTTTTAGAGGCTGCGGGCAGGGGTAAGGGGCAGAGGTGGGTTACTGGTCATTATTCATCTAGATGGTTTAAG TTAAACATGCGCTCTGTTTTTATTGCTTTGAAAACTTGGTTTGGAAATAATGATCTTAACACATCTCTGAGCCCTTTCTT AGTTTGAAATTTTTTAAGCAGTGTTTTCAAGAAATAATCAAGCCTGCATTGTTTGTCGTACTGGAATTGGCCTTTGCTGA GCTTTATTTAATTTTGATCAAGAATAACATGTGTGCCAATGCAAAATATACAGGAAAAATTGATGAACTGGATTTATCTC TTTTGTATGCTCTACATCCTTTGCATCAAAAGCAGTCAACTCTAGAATCTTGATATGTTTTCATTTCCTTTTGCCATTTT CTTTTTGTGGTTTTATTTAGGGCAAAATATGTTCTGCCTCTTAAATTTTAGCCCTTTAGTTAATCACTGCCAAAACTTTT AATTTTGCGCTGGTGATATTCAAACATGGCTCGAATTGTGATTCATTCTCCCTTCCTATTTTCTAAATCAATGAAACTTG TTTCGTGACAACAGGGCAAGTAGGAGCCATACGATTGGGGATTAGCAAGGCTTTGCAAAACTGGGAACCAGATTTGCGAC CTCCACTTAGAAACGGTATATAGCCCTTTTGCCTTTTTTGTATCTGTTGATTTGTTTTGCTACACTTTCTTTCCCCTCCA TGTTGTGAAACTCTTGATTTATCATTGCTCATGTCAGCCTCCCCAAGTTGGGATTCATGCTAGTTAGTCTTTTACTTGTG TGGCTGGGTTGTTATGTGTTGTGCTATAATGATTTACTAATCTAGTTTTTGTTGAATCTTTCCCAGCTGGTTTCCTGACA AGGGACTCACGAGTGGTAGAAAGGAAAAAGCCAGGTAAGGCCAAAGCAAGAAAGAGTTTCCAATGGGTCAAGCGTTAATA CCAGGAGCACCCTTTCTCTTCATGGCGGTTTTTTGAATGGATTATTGGCACTCCTCAATAACCTCTTGAAATTAGTTGAT CATGTACTGCATCATCTCGTTTGATGTGATCAACGTTCAAAATTTCAATGACTCTAATTGTAGAAAATTTTGTTCACATG GGACTTTTATACGTTTCGATTCATTCAGTTTTTGCAGAGTGCTACTGGTTGCTAATTTTTTTTAACCTTACTGCATGATG AATGTTATATTATGAAAATTTGGTTAGTCATTGTAGGGATATATGTATCGAGAAGTATTTTACATATCTGTTCCTTAATG ATGTGTACTTATTATTCGTTTTTGGGTTAGTTGTGTTTCTGTTTAAAAGTGGGAATAAATCATTTTTTACCTGTTAAGCT AAAGTAAGAGTGTGCCAAGAGCCTTTTTGTTGACGGATCCTGCGAATATGATATCTGATGTAAGGTGATGTTCAAGTTCT AAATTTGGCGTTGGCTCGTTAAACTAATACTGTTTGTTATAATGGGTGGTGATTCGTGGG
CDS sequence (LotjaGi3g1v0535600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTCTCTCGCTTAATCCCCAAACCCTCTCATCTCCGTCGCTTCTTCACTCTTCCATCCAAACAACCCCATTTCGCAAA CTCACCCATCAACCCCTTCTTCACAATCGTCCCTAAACCCTTCTCTTCCCGCAGCAACAACAACAACAGTGGAAATGGCA ATGGAAATGGAAGGGGTCCGTTTACTTCGGGAACGTGGGGGACATTGGGTGATGAGAACGAGGAGAAGTTCGACGCATTC TTCACCGAAGATAGCGGAAGCCTCCCCGGATTGAACGAAGCGGAAGGAGGTACTGGGGAAGGTATTGGGGATAGTACAGT TGCAGAGAAGGAGGAACCTTGGTGGTTGCAAGAGAAGGGTCTTGATGATAAAGATGAGGTTGATATATTTAAAGGGATTG ACAAAGAAACTGAAGGCGGCGGCAATGTTGGTTTTGGTGATTCTGGTGGTGATCAAATTGGAGTGGGAGCAGAATCTGAG AATTTCCAACCTTGGAGCTTGAAGGAGGAGGAGGAGGGAGAGGTTGATGTGTTTAAGTTCCCGGAGGATGTCGGCCCGGT GGAGGAGTTCGGTGCCGTGGATAGAACAAAAGAGGAGGCTGAGAAGCTTGAGAAGGAAGAGCAAGCTCTCACTGCCATTG TCAAAGGACCAAAACATGCTTTCGGTGATTTGATTGCTGCTTCTGGTATCACGGATGAAATGCTTGACAGTTTGATTGCC TTGAAAGATTTTGAAGGGATTGAGGGGTTGCCCCCACTTAGTGTAATAGAAGATATGCGCTATGAGAAGAATACTAGTAA ATCCACTAGAGCTGAAATTGAGCGTCTAAAGCAAGAGGAAGCGGCAAAAGCTAGAGTGAGACAAGTAGATGAAAAAGGAC GCGCTTATGGAACGGGAAGAAGAAAATGCAGCATAGCCCGTGTCTGGGTTCAACCTGGATGTGGTAAATTTGTAGTGAAC GAGAAAGAATTCGATGTCTATTTCCCCATGCTCGAGCATCGTGCCACTCTTCTTCGACCTTTCTCTGAGACAAAGACATT GGGGCTCTGGGATGTCACTTGTACTGTGAAAGGAGGTGGTGTTTCAGGGCAAGTAGGAGCCATACGATTGGGGATTAGCA AGGCTTTGCAAAACTGGGAACCAGATTTGCGACCTCCACTTAGAAACGCTGGTTTCCTGACAAGGGACTCACGAGTGGTA GAAAGGAAAAAGCCAGGTAAGGCCAAAGCAAGAAAGAGTTTCCAATGGGTCAAGCGTTAA
Protein sequence (LotjaGi3g1v0535600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLSRLIPKPSHLRRFFTLPSKQPHFANSPINPFFTIVPKPFSSRSNNNNSGNGNGNGRGPFTSGTWGTLGDENEEKFDAF FTEDSGSLPGLNEAEGGTGEGIGDSTVAEKEEPWWLQEKGLDDKDEVDIFKGIDKETEGGGNVGFGDSGGDQIGVGAESE NFQPWSLKEEEEGEVDVFKFPEDVGPVEEFGAVDRTKEEAEKLEKEEQALTAIVKGPKHAFGDLIAASGITDEMLDSLIA LKDFEGIEGLPPLSVIEDMRYEKNTSKSTRAEIERLKQEEAAKARVRQVDEKGRAYGTGRRKCSIARVWVQPGCGKFVVN EKEFDVYFPMLEHRATLLRPFSETKTLGLWDVTCTVKGGGVSGQVGAIRLGISKALQNWEPDLRPPLRNAGFLTRDSRVV ERKKPGKAKARKSFQWVKR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 12 | 12 | - | – | |
| MobiDBLite | 44 | 69 | 26 | - | – | |
| MobiDBLite | 86 | 105 | 20 | - | – | |
| Coils | 193 | 213 | 21 | - | – | |
| PANTHER | 196 | 419 | 224 | 5.4E-105 | – | |
| PANTHER | 196 | 419 | 224 | 5.4E-105 | ||
| Coils | 259 | 279 | 21 | - | – | |
| Hamap | 290 | 419 | 130 | 29.095 | ||
| Gene3D | 292 | 419 | 128 | 4.5E-49 | ||
| SUPERFAMILY | 294 | 419 | 126 | 4.55E-44 | ||
| Pfam | 299 | 419 | 121 | 1.2E-47 | ||
| ProSitePatterns | 358 | 376 | 19 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Structural constituent of ribosome | The action of a molecule that contributes to the structural integrity of the ribosome. | ||
| Cellular component | Ribosome | An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins. | ||
| Biological process | Translation | The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. |
Expression pattern of LotjaGi3g1v0535600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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