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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR014721
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 128 results. Now displaying 1 of 3 with 50 rows per page. This search has taken 7.930s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0061699.1
n.a. PREDICTED: lon protease homolog 2, peroxisomal-like [Glycine max] gi|356563427|ref|XP_003549964.1| chr0 20680891 20689343 -
2 domain predictions
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Lj0g3v0155879.1
n.a. PREDICTED: DNA mismatch repair protein Mlh1-like [Glycine max] gi|356507690|ref|XP_003522597.1| chr0 73063632 73065132 -
2 domain predictions
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Lj0g3v0183909.1
n.a. PREDICTED: lon protease homolog 1, mitochondrial-like [Glycine max] gi|356533540|ref|XP_003535321.1| chr0 89371038 89383274 +
2 domain predictions
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Lj0g3v0270919.1
n.a. PREDICTED: elongation factor G, chloroplastic-like [Glycine max] gi|356563292|ref|XP_003549898.1| chr0 140309870 140314217 +
2 domain predictions
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Lj0g3v0335759.1
n.a. PREDICTED: L-arabinokinase-like [Cicer arietinum] gi|502124500|ref|XP_004498554.1| chr0 175911389 175926316 +
2 domain predictions
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Lj0g3v0335759.2
n.a. PREDICTED: L-arabinokinase-like [Cicer arietinum] gi|502124500|ref|XP_004498554.1| chr0 175920710 175926316 +
2 domain predictions
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Lj0g3v0341909.1
n.a. PREDICTED: elongation factor G, mitochondrial-like [Cicer arietinum] gi|502166590|ref|XP_004513932.1| chr0 179235132 179238892 -
2 domain predictions
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Lj0g3v0341919.1
n.a. PREDICTED: elongation factor G, mitochondrial-like [Glycine max] gi|356541316|ref|XP_003539124.1| chr0 179240705 179246839 -
2 domain predictions
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Lj0g3v0357339.1
n.a. PREDICTED: galactokinase-like [Glycine max] gi|356565073|ref|XP_003550769.1| chr0 188139972 188145393 -
2 domain predictions
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Lj1g3v0968900.1
n.a. PREDICTED: probable phosphomevalonate kinase-like [Cicer arietinum] gi|502136293|ref|XP_004502634.1| chr1 12265072 12272398 -
2 domain predictions
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Lj1g3v1353680.1
n.a. PREDICTED: elongation factor 2-like [Glycine max] gi|356525774|ref|XP_003531498.1| chr1 16105759 16110082 +
2 domain predictions
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Lj1g3v3975720.1
n.a. PREDICTED: elongation factor Tu GTP-binding domain-containing protein 1-like [Cicer arietinum] gi|502123462|ref|XP_004498119.1| chr1 46969692 46976329 -
2 domain predictions
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Lj1g3v4647640.1
n.a. n.a. chr1 55242751 55247465 -
2 domain predictions
 –
Lj1g3v4694270.1
n.a. 40S ribosomal protein S2 [Medicago truncatula] gi|357521321|ref|XP_003630949.1| chr1 55813384 55814557 +
2 domain predictions
 –
Lj1g3v4942840.1
n.a. PREDICTED: mevalonate kinase-like [Glycine max] gi|356505870|ref|XP_003521712.1| chr1 60098524 60099386 -
2 domain predictions
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Lj1g3v4943880.1
n.a. PREDICTED: mevalonate kinase-like [Glycine max] gi|356505870|ref|XP_003521712.1| chr1 60108917 60112380 -
2 domain predictions
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Lj1g3v5038190.1
n.a. PREDICTED: bifunctional fucokinase/fucose pyrophosphorylase-like [Cicer arietinum] gi|502114036|ref|XP_004494840.1| chr1 61684219 61700719 -
2 domain predictions
 –
Lj2g3v0156840.1
n.a. 40S ribosomal protein S2 [Medicago truncatula] gi|357521321|ref|XP_003630949.1| chr2 2819462 2821529 +
2 domain predictions
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Lj2g3v0920490.1
n.a. PREDICTED: glucuronokinase 1-like [Cicer arietinum] gi|502090342|ref|XP_004489197.1| chr2 14627159 14630772 +
2 domain predictions
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Lj2g3v1988690.1
n.a. PREDICTED: lon protease homolog 2, peroxisomal-like [Cicer arietinum] gi|502160472|ref|XP_004511756.1| chr2 29475390 29484392 -
2 domain predictions
 –
Lj2g3v1988690.2
n.a. PREDICTED: lon protease homolog 2, peroxisomal-like [Cicer arietinum] gi|502160472|ref|XP_004511756.1| chr2 29475390 29483748 -
2 domain predictions
 –
Lj2g3v3413250.1
n.a. homoserine kinase-like [Glycine max] gi|359807161|ref|NP_001241610.1| chr2 43126563 43129195 +
2 domain predictions
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Lj3g3v0139450.1
n.a. 30S ribosomal protein S5 [Medicago truncatula] gi|357519961|ref|XP_003630269.1| chr3 1048060 1052549 -
2 domain predictions
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Lj3g3v0290230.1
n.a. PREDICTED: DNA repair protein RadA homolog [Cicer arietinum] gi|502081182|ref|XP_004486791.1| chr3 1908311 1919580 -
2 domain predictions
 –
Lj3g3v0965560.1
n.a. PREDICTED: elongation factor 2-like [Glycine max] gi|356525774|ref|XP_003531498.1| chr3 12666294 12670036 +
2 domain predictions
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Lj3g3v0965570.1
n.a. Elongation factor EF-2 [Medicago truncatula] gi|357451779|ref|XP_003596166.1| chr3 12667005 12670366 +
2 domain predictions
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Lj3g3v1957990.1
n.a. PREDICTED: DNA mismatch repair protein MLH1-like [Cicer arietinum] gi|502127149|ref|XP_004499581.1| chr3 25292324 25303721 -
2 domain predictions
 –
Lj3g3v2315550.1
n.a. Elongation factor EF-2 [Medicago truncatula] gi|357451821|ref|XP_003596187.1| chr3 28433062 28438042 -
2 domain predictions
 –
Lj3g3v2316610.1
n.a. PREDICTED: elongation factor 2-like [Glycine max] gi|356525774|ref|XP_003531498.1| chr3 28482403 28485647 -
2 domain predictions
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Lj3g3v2318330.3
n.a. DNA repair protein radA-like protein [Medicago truncatula] gi|357513543|ref|XP_003627060.1| chr3 28901488 28908744 -
2 domain predictions
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Lj3g3v2318330.4
n.a. DNA repair protein radA-like protein [Medicago truncatula] gi|357513543|ref|XP_003627060.1| chr3 28901488 28908744 -
2 domain predictions
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Lj3g3v3599440.1
n.a. PREDICTED: 37S ribosomal protein S9, mitochondrial-like [Cicer arietinum] gi|502176730|ref|XP_004515926.1| chr3 43527298 43530619 +
2 domain predictions
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Lj4g3v0462600.1
n.a. PREDICTED: 30S ribosomal protein S5, chloroplastic-like [Glycine max] gi|356521382|ref|XP_003529335.1| chr4 6895339 6898171 -
2 domain predictions
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Lj4g3v0620250.1
n.a. PREDICTED: 40S ribosomal protein S16-like [Cicer arietinum] gi|502143172|ref|XP_004505244.1| chr4 9531952 9536027 +
2 domain predictions
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Lj4g3v1971930.1
n.a. PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein component-like [Cicer arietinum] gi|502151359|ref|XP_004508402.1| chr4 27386497 27391330 -
2 domain predictions
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Lj4g3v2263880.1
n.a. PREDICTED: galactokinase-like [Cicer arietinum] gi|502150796|ref|XP_004508128.1| chr4 31361898 31367834 -
2 domain predictions
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Lj4g3v3015190.1
n.a. Galactokinase [Medicago truncatula] gi|357520677|ref|XP_003630627.1| chr4 40375349 40384493 +
2 domain predictions
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Lj4g3v3113160.1
n.a. 40S ribosomal protein S2 [Medicago truncatula] gi|357521321|ref|XP_003630949.1| chr4 41598383 41600418 +
2 domain predictions
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Lj5g3v0308340.1
n.a. PREDICTED: 30S ribosomal protein S9, chloroplastic-like [Glycine max] gi|356552153|ref|XP_003544434.1| chr5 2838091 2840001 +
2 domain predictions
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Lj5g3v0308350.1
n.a. PREDICTED: 30S ribosomal protein S9, chloroplastic-like [Cicer arietinum] gi|502125913|ref|XP_004499112.1| chr5 2838091 2840113 +
2 domain predictions
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Lj5g3v1631040.1
n.a. PREDICTED: mismatch repair endonuclease PMS2-like [Glycine max] gi|356502864|ref|XP_003520235.1| chr5 23651550 23657326 -
2 domain predictions
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Lj5g3v2240960.1
n.a. PREDICTED: diphosphomevalonate decarboxylase-like [Cicer arietinum] gi|502121015|ref|XP_004497159.1| chr5 32242930 32247786 -
2 domain predictions
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Lj6g3v1008180.1
n.a. PREDICTED: 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplastic/chromoplastic-like [Cicer arietinum] gi|502126787|ref|XP_004499437.1| chr6 11123384 11127831 -
2 domain predictions
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Lj6g3v1918200.1
n.a. 30S ribosomal protein S5 [Medicago truncatula] gi|357519961|ref|XP_003630269.1| chr6 21702343 21706161 +
2 domain predictions
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LotjaGi1g1v0000900.1
n.a. Homoserine kinase; TAIR: AT2G17265.1 homoserine kinase; Swiss-Prot: sp|Q8L7R2|KHSE_ARATH Homoserine kinase; TrEMBL-Plants: tr|D2DKF1|D2DKF1_SOYBN Homoserine kinase; Found in the gene: LotjaGi1g1v0000900 LjG1.1_chr1 357693 361368 -
2 domain predictions
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LotjaGi1g1v0000900.2
n.a. Homoserine kinase; TAIR: AT2G17265.1 homoserine kinase; Swiss-Prot: sp|Q8L7R2|KHSE_ARATH Homoserine kinase; TrEMBL-Plants: tr|D2DKF1|D2DKF1_SOYBN Homoserine kinase; Found in the gene: LotjaGi1g1v0000900 LjG1.1_chr1 357785 361328 -
2 domain predictions
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LotjaGi1g1v0000900.3
n.a. Homoserine kinase; TAIR: AT2G17265.1 homoserine kinase; Swiss-Prot: sp|Q8L7R2|KHSE_ARATH Homoserine kinase; TrEMBL-Plants: tr|D2DKF1|D2DKF1_SOYBN Homoserine kinase; Found in the gene: LotjaGi1g1v0000900 LjG1.1_chr1 360062 361195 -
2 domain predictions
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LotjaGi1g1v0286000_LC.1
n.a. Phosphomevalonate kinase; TAIR: AT1G31910.1 GHMP kinase family protein; Swiss-Prot: sp|Q9C6T1|PMK_ARATH Phosphomevalonate kinase, peroxisomal; TrEMBL-Plants: tr|C6T7N7|C6T7N7_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0286000_LC LjG1.1_chr1 69445776 69448535 -
2 domain predictions
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LotjaGi1g1v0321400.1
n.a. Elongation factor; TAIR: AT1G56070.1 Ribosomal protein S5/Elongation factor G/III/V family protein; Swiss-Prot: sp|Q9ASR1|EF2_ARATH Elongation factor 2; TrEMBL-Plants: tr|A0A0B2R210|A0A0B2R210_GLYSO Elongation factor 2; Found in the gene: LotjaGi1g1v0321400 LjG1.1_chr1 77214048 77219779 +
2 domain predictions
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LotjaGi1g1v0321400.2
n.a. Elongation factor; TAIR: AT1G56070.1 Ribosomal protein S5/Elongation factor G/III/V family protein; Swiss-Prot: sp|Q9ASR1|EF2_ARATH Elongation factor 2; TrEMBL-Plants: tr|A0A0B2R210|A0A0B2R210_GLYSO Elongation factor 2; Found in the gene: LotjaGi1g1v0321400 LjG1.1_chr1 77214237 77219587 +
2 domain predictions
 –