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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0538400 |
| Transcript ID | LotjaGi3g1v0538400.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ADP-ribosylation factor; TAIR: AT3G03120.1 ADP-ribosylation factor B1C; Swiss-Prot: sp|P91924|ARF_DUGJA ADP-ribosylation factor; TrEMBL-Plants: tr|I3SEX0|I3SEX0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0538400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:95480938..95483650) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGTCAAGCTTTTCGGAAACTCTTCGATACCTTCTTCGGCAACACCGAGATGCGGGTAACCCTAAATAAATGTCATTG ATTATTAACTTGTAACCTAGGATGGATCAATTACTGTTTTAATTTCAATTTAATCTAACTCACCTATCTCTAATTGCTTT TTAATAATGCAATCACCATTCATTATTGGTTCAGGTTGTTATGCTTGGTCTTGATGCTGCTGGAAAAACAACTATACTGT ACAAGCTTCACATTGGAGAAGTTTTATCTACTGTTCCTACTATTGGTGTGTTTTATTCTATAAGCTCATTATTTAATTAA TTGTTTTCTTTGTTAAGTTTTCTTAAATACTTGTTTTAGTTGGTTTAGGATGGTGAATCTCTGTTAGCAATGAGTATGTT GTGTGAATTCAATGGATGCTAGCATGTAATCGTGTTTCAGTTTAGTCGAAGGAAAATTAGAAGTGGAAATAATCTATATA TGTTATTTGAGGGTTTGTCAAATTGTATTGTTTTGCAGGTTTCAATGTGGAGAAGGTTCAGTATAAGAATGTTATTTTCA CGGTTTGGGATGTTGGAGGGCAAGAGAAACTTAGGGCACTTTGGAGGCACTATTTTAACAATACAGATGGTTTGGTAAGA ACTAATTCCCATGTTTTTATGTTTTTTTTAACACACAAATCTTGTCTTTTGGCTGTTATGTAAAATGTTTCTTGTGTTAC AATCGTCCATTTATCCATTGTTATCCATATCTTATGATACGTATCTCGATACGATACAAGTTTTCAAGGCCCCGATACGT ATCGCACTGTGAATCTAAAATGAACTTGAATCTCTGTCTGTATCTCCAAGTCTGAGCTGAATTGTCAGGCTGATACATAT GTGCACATTTATGCAGATTTATGTTGTTGATAGTCTGGACCGTGAGAGGATTGGGAAAGCAAAGCAGGAATTTCAGGTGA TAAAATAAAAAAGTACACATGCACACACACACACACACTCACTATGTTACTCCAAGCAGACTTTGAATTTAACAGTGGAT TACTTGCAGACAATCATAAACGACCCATTTATGCTCAACAGTATTATCTTGGTCTTCGCCAACAAACAAGATCTGGTACG TCCTTTTCACTTAACCAGGCTTTCGGCTGAATGACCTGACATCTATGGTTATCTTTATATGTGATTATCTTTTATGTTGG GATTTTTCAAGAAATATGAACCAACTTATGGGGAAACCTAAAACAAATCTATGCCTCAGAAAAAAATAAAGCATTTACTG AGTGAGATTTGCTCCCATCATAGGTCCAATTGTGTTCCAGTGACAATCTGACATGATGCAAAAGTTATTGTTTAATTAGA TAGAGAAGTACTTTCAGCAAACCCTCTTTTATTGGTTGATATTTATGTTGGTTCCATTAAGTTTGGAGTGAAATCCACCA AATTGGAAGTGGGATCTATATAAGAGAGTATATTAGAGAATATGCTTTTAGCATTTCTCATTTAGGAAACACCTTGCATG GAAGGTTGGCTCTCACAAACAATTTTCTTATATATATTGTCGAAAGTAATTTGAATTTAAATGTGGTGGGGAACTCAGTA ACTGGAGATATTTGACAGAGGATTAGCTCTTTGTAGATTTTCTTTATTTGTGTGTGCATATTTCCTATTGTATATTTGGT TCACCAGTTAATACAGCGCATGCATGTTTCATGAAAAATGATCCTCTCCATCCAAGTTATGTGCAGCATCTCTCCTGCAA GATACTGCTCATGCATGTTTCTTGCATGGATAAGACTGCTCATTGCTCAATGAGAGAGTGGTTGGTTAAAATGGTTCTGC AATTGATAATATTTAGCCATTTTATTTGCTGTAGAGGCAGGAAGGCTGGAGAGGATCTAAGTCCTTGTTTCATCCCATTT TGGGAACATTGAGTCAATTTTGATCTTGCAGTAATATTTTTTTTTTTGCTTTGTTTCTGACTTACTGTTATCGAAATTAG AACAAAGAAAAACTTTCGGATAGTCCAATCTCTGTAATTTTGACAAATCTCAAGGGAGGTCAGAGTAATTTCTCAAAATT TTAATTATCAAAGCACCCAAGATAAAAAAAATGAACAAAAACATATTTTTCTGTTCTCTGGTTAACTTTTTCTATTTAAA TATTTTTGTTTGTGTTTCTCCAGCATCCCGTATGACCATTAAAAATTTAGATGCCAGGAAGACTTTCTGATTTTTGTTTT TTCACTTTTGGATGGAATTTTTGAAACTTCCATTACACATTCAGGTTGAATTCTGACATGTATACCACTTGAGTCCATCA TGTTATCTTTAGTAAAAGCGCGACTGACTCAGTTTTCTTTCTCAATATGTGTAGTTTCATCAATGGAAGTTCCTAGTACT CAAAATTAACCTGCACTTTTATACTATTATCAATATCTAGCAATGCTAGCAGACAATTCTTCTTGAACAAATTCCTCCAA ATAAATGTAAACAATATTTTCCTTTTTATTTCCAGAGAGGAGCGATGACGACAAAGGAAGTATGTGATGGACTGGGTCTG TTTGATCTCAAGAATAGACAGTGGCACATACAAGCCACTTGTGCGCTTAAGGGGGATGGCCTTTATGAAGGCTTGGACTG GTTGTCCTCAACTCTCAAGGAGAGGAATGCTGCTGGATACTCGTCAATAGGACTAGGAACTGCATCCTTCTAA
CDS sequence (LotjaGi3g1v0538400.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTCAAGCTTTTCGGAAACTCTTCGATACCTTCTTCGGCAACACCGAGATGCGGGTTGTTATGCTTGGTCTTGATGC TGCTGGAAAAACAACTATACTGTACAAGCTTCACATTGGAGAAGTTTTATCTACTGTTCCTACTATTGGTTTCAATGTGG AGAAGGTTCAGTATAAGAATGTTATTTTCACGGTTTGGGATGTTGGAGGGCAAGAGAAACTTAGGGCACTTTGGAGGCAC TATTTTAACAATACAGATGGTTTGATTTATGTTGTTGATAGTCTGGACCGTGAGAGGATTGGGAAAGCAAAGCAGGAATT TCAGACAATCATAAACGACCCATTTATGCTCAACAGTATTATCTTGGTCTTCGCCAACAAACAAGATCTGAGAGGAGCGA TGACGACAAAGGAAGTATGTGATGGACTGGGTCTGTTTGATCTCAAGAATAGACAGTGGCACATACAAGCCACTTGTGCG CTTAAGGGGGATGGCCTTTATGAAGGCTTGGACTGGTTGTCCTCAACTCTCAAGGAGAGGAATGCTGCTGGATACTCGTC AATAGGACTAGGAACTGCATCCTTCTAA
Protein sequence (LotjaGi3g1v0538400.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGQAFRKLFDTFFGNTEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRALWRH YFNNTDGLIYVVDSLDRERIGKAKQEFQTIINDPFMLNSIILVFANKQDLRGAMTTKEVCDGLGLFDLKNRQWHIQATCA LKGDGLYEGLDWLSSTLKERNAAGYSSIGLGTASF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 188 | 188 | 1.9E-119 | – | |
| SMART | 1 | 181 | 181 | 2.2E-100 | – | |
| PANTHER | 1 | 188 | 188 | 1.9E-119 | – | |
| Pfam | 6 | 176 | 171 | 2.9E-69 | ||
| SMART | 9 | 177 | 169 | 1.2E-15 | – | |
| ProSiteProfiles | 11 | 177 | 167 | 22.859 | – | |
| SUPERFAMILY | 14 | 181 | 168 | 2.52E-56 | ||
| TIGRFAM | 16 | 138 | 123 | 2.9E-22 | ||
| CDD | 18 | 176 | 159 | 4.5271E-105 | – | |
| Gene3D | 18 | 177 | 160 | 7.9E-61 | – | |
| SMART | 18 | 180 | 163 | 0.0068 | – | |
| PRINTS | 19 | 42 | 24 | 4.7E-17 | ||
| PRINTS | 47 | 71 | 25 | 4.7E-17 | ||
| PRINTS | 74 | 99 | 26 | 4.7E-17 | ||
| PRINTS | 119 | 140 | 22 | 4.7E-17 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of LotjaGi3g1v0538400.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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