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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0541600 |
| Transcript ID | LotjaGi3g1v0541600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb transcription factor; TAIR: AT5G16770.1 myb domain protein 9; Swiss-Prot: sp|Q8GWP0|MYB39_ARATH Transcription factor MYB39; TrEMBL-Plants: tr|Q84PP5|Q84PP5_LOTJA Transcription factor MYB101; Found in the gene: LotjaGi3g1v0541600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:95843952..95846585) extracted from Lotus japonicus Gifu genome v1.2.
ATCATGTGCACCTCAAACACAGGATATGATAAGAGTCTATCCTGCTTTTATCCTATCCTGTTGATATCCTGTTCACATAT CATATCCTATCATATCCTATCCTGACCACCAAACGAGCCCTAAGAGTAGATACATTACTGTGAGGAGTGTCTTATGACGC CCTTCAAGGTCGTTATCTACATGTATAATACAGGACAAATTTGGAATTTTATATGAGAACATGATAAACAACTCTTATAT TCCAAACATCTCCATATGCTATATATAACAAGCACCCCTCTACTAAATAACCCAAGTTCCCCCACAGTACTCTAATCTAT ATACCTTCATTCTCCAGTTCACAACACTCCAAGGTATGGATTCATTTGCTCTCTTTCATTGCCATGACCATGAAAGTTAT CCCTAGAATCAAACTAAACCTTGTACTATTTTGAATGTGTTTGTGCAGTGCAAGTGATGATGGGGAGAACACCATGCTGT GATGAAATTGGATTGAAGAAGGGGCCTTGGACCCCGGAAGAGGATGCAATATTGGTGGATTACATTCAGAAACACGGCCA TGGAAGTTGGAGAGCACTTCCGAAGCTTGCAGGACTGAACAGGTGCGGGAAGAGTTGCAGGCTAAGGTGGACTAACTACT TGAGGCCTGATATTAAAAGAGGAAAGTTCACTGAGGAAGAAGAGCAACTCATCATCAATTTACATGCTGTTCTTGGGAAT AAGTAATCTCCTAATCACTATTCATTATATTTTATTACTATTAAGATTTATGAACTTATTATTTGAATAGTAAAACTCAC TTAGTTAATTACATTTCACTTCTAAGTTCTGAACAACTTGGTAGTTTTCCTAAATGGCAACCTTAAAATAATGTTTATAT GGTGTTTGATTATGTGGTTGAGAGTCTCTTAATCATTTCTGGTGAGAAAATGCAAAGTATAGCTTCTTGGGTCACTGTGC TTTGGATTGTTAGACTATGTTCTTTTAATTTAGGCTATGAACTGGTAGTTTTCCTCATGGCAAACTTTAAAAAGATGCTT ATAATGAAAGCAATAGATTAGGGTATGTTTCGAACTAGTTTTCTCCAAAATGAAAGCACATTCACACGGATTTTGAGAGA AAATGTAGAAGGAACTTTGATGGTTTCTTTGATTAGAAAGTCCTAAGTGAAATTTAAGCATGTGTTTGTATTTACGTTCA AGTTGGTGAAAAACGCATTTACTGTAATAATATAAGAGGTGTGAATTAGTCAAATGCTCGTTCAAACTGCTTAGAACTTG CGCTACAAAAATACAAACATACAATTTGTTTCCAAACACAAACTTAGGCTTGGACTATATTATGTTCATCTTTTGACAAT ACTAAATAAAAAATTGATTATGTATATGCTTTGTTTCCATGATTAGGTGGTCTGCCATAGCAGGTCATTTGCCAGGGAGG ACTGATAATGAAATCAAGAATTTCTGGAACACCCATTTGAAGAAAAAGCTTCTGCAAATGGGGTTAGATCCAGTCACTCA TCGTCCAAGATTAGATCACCTTAATCTTCTATCCAATCTCCAACAGTTCCTAGCTGCCACAAACATGGTCACTAGTTTCA CAAACACTTTGGATTCTAATGCTGCTCTGAGGCTGCAATCAGATGCAACACAACTAGCCAAACTCCAATTGCTGCAGAAC ATACTTCAAGTTCTTGGAACCAATCCTGCCTCAAACTTGGAGCTACTTAATCAACTTGGACCATCATCTTCAATTTCAGA CACTTTTCTTCATGAAGCTTTAGGATTGAATCAATCTAAGCTCCAAGAACTTTATAAGAGTTCAATTGGTTTTCCTTCTC ATCAAAATCTGTCTAATTTGCAAACCTTAGAAGTCCCACATCATCTGCAGCAACATTACATGAATGGAAGCAGCACTATT AATAGTTGCATGCAGTCTCGAAAGGTGGTTGATGAACAACTTGATGCCACAAACTCTTCTTCAACTATACCATTAAATTC ACTTCCAAATCTGGTTTCAGCATCACCTCAATGTTCCACTGTCAAGGAAATGGAAAACAAGGTGAATCCAAATGAGTGCT CCAACCCTTCTTCCACTTCAACCACCTTTGAAATGTGGGGAGATTTCATGTGTGAGGAAGTAAACGATGATTATTGGAAA GACCTTATAGAGTAAGTAACCTTCATGATTATAGTATTGCACCGTTTTTCTAGCTCCACTTGGAGTCTTGGACTTATTGG AAATTTTCTGATGAATTATTAATTGTGGCATGACATACTCATTTTTTTCTCCCTATATTTGCAGCCAAGAGTCTAACCGG TAACAAAACATAGCAGAGTCTGATGGAAATACAAACAGCATTCAAGAATAATCACAGGGATAAAGGCAATTATCATTGGT CTCTAGGATCAACACGTAAACTGTTCATTTATGTATAGTTGGTTTGGTTGATTCATATGCATTTGAAAGATGGATTGGTT TTTGGATTTGAACATATAAGCTTCCATTGTATAGAGGATTCCTGTGACATGGAGAGTGTAATTTCACAGGGTACAATCCT CTCATATTCATTTTCTTGTACTATAGCATATTTAGATCAACTTCTCTTTCCCCAAAATCAATTCTGAAACTAAG
CDS sequence (LotjaGi3g1v0541600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGGGGAGAACACCATGCTGTGATGAAATTGGATTGAAGAAGGGGCCTTGGACCCCGGAAGAGGATGCAATATTGGT GGATTACATTCAGAAACACGGCCATGGAAGTTGGAGAGCACTTCCGAAGCTTGCAGGACTGAACAGGTGCGGGAAGAGTT GCAGGCTAAGGTGGACTAACTACTTGAGGCCTGATATTAAAAGAGGAAAGTTCACTGAGGAAGAAGAGCAACTCATCATC AATTTACATGCTGTTCTTGGGAATAAGTGGTCTGCCATAGCAGGTCATTTGCCAGGGAGGACTGATAATGAAATCAAGAA TTTCTGGAACACCCATTTGAAGAAAAAGCTTCTGCAAATGGGGTTAGATCCAGTCACTCATCGTCCAAGATTAGATCACC TTAATCTTCTATCCAATCTCCAACAGTTCCTAGCTGCCACAAACATGGTCACTAGTTTCACAAACACTTTGGATTCTAAT GCTGCTCTGAGGCTGCAATCAGATGCAACACAACTAGCCAAACTCCAATTGCTGCAGAACATACTTCAAGTTCTTGGAAC CAATCCTGCCTCAAACTTGGAGCTACTTAATCAACTTGGACCATCATCTTCAATTTCAGACACTTTTCTTCATGAAGCTT TAGGATTGAATCAATCTAAGCTCCAAGAACTTTATAAGAGTTCAATTGGTTTTCCTTCTCATCAAAATCTGTCTAATTTG CAAACCTTAGAAGTCCCACATCATCTGCAGCAACATTACATGAATGGAAGCAGCACTATTAATAGTTGCATGCAGTCTCG AAAGGTGGTTGATGAACAACTTGATGCCACAAACTCTTCTTCAACTATACCATTAAATTCACTTCCAAATCTGGTTTCAG CATCACCTCAATGTTCCACTGTCAAGGAAATGGAAAACAAGGTGAATCCAAATGAGTGCTCCAACCCTTCTTCCACTTCA ACCACCTTTGAAATGTGGGGAGATTTCATGTGTGAGGAAGTAAACGATGATTATTGGAAAGACCTTATAGACCAAGAGTC TAACCGGTAA
Protein sequence (LotjaGi3g1v0541600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMGRTPCCDEIGLKKGPWTPEEDAILVDYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFTEEEEQLII NLHAVLGNKWSAIAGHLPGRTDNEIKNFWNTHLKKKLLQMGLDPVTHRPRLDHLNLLSNLQQFLAATNMVTSFTNTLDSN AALRLQSDATQLAKLQLLQNILQVLGTNPASNLELLNQLGPSSSISDTFLHEALGLNQSKLQELYKSSIGFPSHQNLSNL QTLEVPHHLQQHYMNGSSTINSCMQSRKVVDEQLDATNSSSTIPLNSLPNLVSASPQCSTVKEMENKVNPNECSNPSSTS TTFEMWGDFMCEEVNDDYWKDLIDQESNR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 8 | 345 | 338 | 3.1E-94 | – | |
| PANTHER | 8 | 345 | 338 | 3.1E-94 | ||
| ProSiteProfiles | 10 | 62 | 53 | 18.225 | ||
| Gene3D | 12 | 68 | 57 | 7.0E-21 | – | |
| SUPERFAMILY | 12 | 109 | 98 | 8.8E-33 | ||
| SMART | 14 | 64 | 51 | 1.6E-15 | ||
| Pfam | 15 | 62 | 48 | 1.7E-16 | ||
| CDD | 17 | 62 | 46 | 1.67435E-12 | ||
| ProSiteProfiles | 63 | 117 | 55 | 28.127 | ||
| SMART | 67 | 115 | 49 | 1.9E-17 | ||
| Pfam | 68 | 113 | 46 | 3.2E-16 | ||
| CDD | 70 | 113 | 44 | 1.31604E-13 | ||
| Gene3D | 70 | 117 | 48 | 1.2E-21 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi3g1v0541600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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