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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0542200 |
| Transcript ID | LotjaGi3g1v0542200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Heat shock transcription factor; TAIR: AT5G16820.1 heat shock factor 3; Swiss-Prot: sp|Q84T61|HSFA1_ORYSJ Heat stress transcription factor A-1; TrEMBL-Plants: tr|G7JSS3|G7JSS3_MEDTR Heat shock transcription factor A3; Found in the gene: LotjaGi3g1v0542200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:95873589..95876759) extracted from Lotus japonicus Gifu genome v1.2.
CTAAATAATTTTATTTATATATAAATGATCCTTTACTTTCCCCTTTTATCAAGTTGTTCTGACACACCAAACCAAACCAA ACCAAAAGGATCTATCTATCTATCTATCTCTAAAATTCACTTGACTGTCTTTCTCTGTTTGAATTCTGTACTTTGTTTCT GCTCCAGTCATGGCGGCGCCATTTCTGAGCAAGACGTATGAGATGGTCGATGATTCCTCCACCGATTCCACTGTTTCGTG GGGTCTCAACAACAACACCTTCGTCGTTTGGAACGTCACCGATTTCGCCAAACACATCTTGCCCACCTATTTCAAGCACA ACAACTTCTCCAGCTTCGTCAGACAACTCAACACCTATGTCAGTAACCTTCAATTTCACCATTTTTGCTTTTTAGGGTTA GTAATAGTATTATGCTGTAGGAATTGCAATAGGATCATAGCTCCCCTGATGGGAATTGTTTCATTTGTTATATGATTATC AAAATCACATATATATTATAGTGATTTTATAGGGAGGAGAGGACTAAATGTTTGTTGCATCTTCTTTGAGCAGGGTTTTA GGAAGGTTGATCCGGATCGCTGGGAATTTGCACATGAAGGGTTTTTAAGGGGTCAAAAGCACTTGTTGAATACTATCAGG AGGCGGAAATCTGCCCATGTCAATGGCGGTAGCCAACCGCCGGCTCAGGTGCAGAAGCCGCCTGCTGGGGCGTGTGTTGA AGTGGGTAAGTTTGGGATTGATCAAGACATTGAGAGACTGAAAAGGGATAAAAATGTTCTTATGCAAGAACTTGTGAGGT TAAGACAACAGCAACAATCGACTGATAACCAATTGCAAGGTGTTGGGCAACGTGTGCAGGTAATGGAGCAGCGTCAGCAC CAGATGATGTCATTTCTGGCTAAGGCCATGCATAGTCCGGGAATATTGGCTCAGTTTGTACAGCAGCAGAATGAAAGTAA TAGACACATTTCTGGAGTTAAAAAGAGGAGGCTTCATAGGCAAGAAGATGAAGAAGAAGGAGAGGAAGAAGATAGTTTAG CTACCAAGCATCTCCATAATGCTCTTGATGGACATGTTGTCAAGTACCAGCCTTCGATAAATGAGGCAGCCAAAGCATTA CTTCGCCAGATATTGCAAAAGAACAATTCTACAAGGATGGAATCATCAATTAAGAACCCTGATGCATTCCTTATTGATGA TGTTCCTTCAGCCATTGCATTAGATAGCAGTGGTTCATTCACTCAGGTCTCCGGTGTAACACTTTCTGAGGTTCCACCTA TTTCTGGGCAGCCATGTGTGGCAGTAGAATCTCAATTTCCTGTTAGTTGTATGACCAATAGCATGTCTGAGGTGCAACCT CCACCTGCTGTGTTGACGGATTGTGTTAGCACAGCTGAATTTCCAGAATTAATGGCACGAAGTTGCCAAGATAGTGTTTT GGATTTTGGTAAAGTTCAAGGATCGGGGACAGAAAGCGGCTCCATGAATCCTGCCCTAAGTTTTGCAGGCTCTAACATCG GGAGTGAGCCGGAGATAGAGGCAATGTCGACTGTTTTAGATGGGACACAGTCTCTTGAAGCTAATGCATTTTCTCCTGAT GCAGATGTAATTTCTAAGCTTCCAGGAATCAATGATGAATTCTGGGAACAATTTTTTAGCCCAAGCCCACTTACTGGAGA TACAGATGAAGTTGAATCCAGTTCTCTGGGATATGGGTTGACTGAAGACCAGGAATATGAAAAGGAGATTCAACAGGAAA AGATGGATAAGAAACAGTATATTGACCATCTTTCACATCAGATGGAACTTCTTGCATCGGAGTCTTAATTGTGTATATAT GTTTCTGGCAACTGAAGGTACAATTTTTTGCTTGTGTTATCTCAATAAGCATGCTGGTTCTCGTTCTTCCTTCCTTGACT TGTAAGTTGTGTAAAATATTCTGTCATTGGCATGCTCAATTGCTGTCTTGCTTTTTTTATAGTGGCGGCTGTTGTAGATA TAGAGAAACGATAGTTTTTGTAAATGTCTATAGTAGTATCTGACCTTGTTTCTAGATGTATCTAACACAGATTTATATCC AAATTGAGTTATGGGAAGAAGAGGAAGGATTTTTTTAGGGGTACTTCCATTTTCCTTTGGTGTATGAATTGTATTAAAAA AGATGATATGCTTTCGTCCCCTTTTGTAATATTGTTTACATGCACAGTGTACATATATGACATTTGGAATTTTTGGTTCA CTGAAAAAAGGAGTCGAAGTCGGTAGAAAATATATATTTTGTTTTCCAATATTCTTTTTTCATGATTCCTGCAGAGGTTG AGGTCCTTTGCTGCTGGGCAGACAATGTCAAATTATATGCCTGCTTTCCTGCAGAGGTTGAAGCATATTATCCCTGCTTC TACAAAGATACCTGACTGATATCACCAAACAAATTATCCCTGTTTCTCATCCCCCCATCTGTGTCTCTGCCCCGTTTCAT GTGTTTCATTTGTCACTTGGGGGGCAAAAACTTAATACAGTTTTATTTAATTTCCCTTATTTTGCTTGTACTTTGGATTT GACAATTCTGTTTGCCCTTCTAGCACTTCTTGTTTATATTTACAAGGAACAGGATAGTTTTTTTTATCTATTCTCTCTTC CTTGCTCTCATCTTCTCATGTGGTAATATTTTAGTGGGGGGTGTTCTGTATAATTGCACTGCTGAGTTATTTACCCAACA ACTTTTTCTTGCAATTATTTATATTTTGCGGGAACATAGCAGTACTAAAATACGAGTTATCTCCAAGCAAATTAAATGAT AAGGAACCATGTGTTTATTGGATGGCTCCATGGTGGAGGCTCTTTATTGGACTCTGATAGAATTTTGCAACAGAGACTAC TGTGTCTTGGTTTTCAGTATTTTAGTTTAATGGAGTAAAGGAAATCGTTTGCCTCGTGCTTATTTTGTTCCTTGTTTTGA TGATACATGAATTATATTTGGTCAAAAGGAGAAGCCCCAAATTAGCAATTGTAGTTACTTTGGATGTCTCTCAGTTGCAT TGACCTGACTGTGCTGTACATCATGTGAGCTCACTTTAGAGGAGTCTTTTCCATTAAGTAAAAATGTTTCCCAAATTTGA AAAATGTGTTTAGGGAAAGTATGATTATAGATACTTTTTATTTAAGTAAAA
CDS sequence (LotjaGi3g1v0542200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGCGCCATTTCTGAGCAAGACGTATGAGATGGTCGATGATTCCTCCACCGATTCCACTGTTTCGTGGGGTCTCAA CAACAACACCTTCGTCGTTTGGAACGTCACCGATTTCGCCAAACACATCTTGCCCACCTATTTCAAGCACAACAACTTCT CCAGCTTCGTCAGACAACTCAACACCTATGGTTTTAGGAAGGTTGATCCGGATCGCTGGGAATTTGCACATGAAGGGTTT TTAAGGGGTCAAAAGCACTTGTTGAATACTATCAGGAGGCGGAAATCTGCCCATGTCAATGGCGGTAGCCAACCGCCGGC TCAGGTGCAGAAGCCGCCTGCTGGGGCGTGTGTTGAAGTGGGTAAGTTTGGGATTGATCAAGACATTGAGAGACTGAAAA GGGATAAAAATGTTCTTATGCAAGAACTTGTGAGGTTAAGACAACAGCAACAATCGACTGATAACCAATTGCAAGGTGTT GGGCAACGTGTGCAGGTAATGGAGCAGCGTCAGCACCAGATGATGTCATTTCTGGCTAAGGCCATGCATAGTCCGGGAAT ATTGGCTCAGTTTGTACAGCAGCAGAATGAAAGTAATAGACACATTTCTGGAGTTAAAAAGAGGAGGCTTCATAGGCAAG AAGATGAAGAAGAAGGAGAGGAAGAAGATAGTTTAGCTACCAAGCATCTCCATAATGCTCTTGATGGACATGTTGTCAAG TACCAGCCTTCGATAAATGAGGCAGCCAAAGCATTACTTCGCCAGATATTGCAAAAGAACAATTCTACAAGGATGGAATC ATCAATTAAGAACCCTGATGCATTCCTTATTGATGATGTTCCTTCAGCCATTGCATTAGATAGCAGTGGTTCATTCACTC AGGTCTCCGGTGTAACACTTTCTGAGGTTCCACCTATTTCTGGGCAGCCATGTGTGGCAGTAGAATCTCAATTTCCTGTT AGTTGTATGACCAATAGCATGTCTGAGGTGCAACCTCCACCTGCTGTGTTGACGGATTGTGTTAGCACAGCTGAATTTCC AGAATTAATGGCACGAAGTTGCCAAGATAGTGTTTTGGATTTTGGTAAAGTTCAAGGATCGGGGACAGAAAGCGGCTCCA TGAATCCTGCCCTAAGTTTTGCAGGCTCTAACATCGGGAGTGAGCCGGAGATAGAGGCAATGTCGACTGTTTTAGATGGG ACACAGTCTCTTGAAGCTAATGCATTTTCTCCTGATGCAGATGTAATTTCTAAGCTTCCAGGAATCAATGATGAATTCTG GGAACAATTTTTTAGCCCAAGCCCACTTACTGGAGATACAGATGAAGTTGAATCCAGTTCTCTGGGATATGGGTTGACTG AAGACCAGGAATATGAAAAGGAGATTCAACAGGAAAAGATGGATAAGAAACAGTATATTGACCATCTTTCACATCAGATG GAACTTCTTGCATCGGAGTCTTAA
Protein sequence (LotjaGi3g1v0542200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAAPFLSKTYEMVDDSSTDSTVSWGLNNNTFVVWNVTDFAKHILPTYFKHNNFSSFVRQLNTYGFRKVDPDRWEFAHEGF LRGQKHLLNTIRRRKSAHVNGGSQPPAQVQKPPAGACVEVGKFGIDQDIERLKRDKNVLMQELVRLRQQQQSTDNQLQGV GQRVQVMEQRQHQMMSFLAKAMHSPGILAQFVQQQNESNRHISGVKKRRLHRQEDEEEGEEEDSLATKHLHNALDGHVVK YQPSINEAAKALLRQILQKNNSTRMESSIKNPDAFLIDDVPSAIALDSSGSFTQVSGVTLSEVPPISGQPCVAVESQFPV SCMTNSMSEVQPPPAVLTDCVSTAEFPELMARSCQDSVLDFGKVQGSGTESGSMNPALSFAGSNIGSEPEIEAMSTVLDG TQSLEANAFSPDADVISKLPGINDEFWEQFFSPSPLTGDTDEVESSSLGYGLTEDQEYEKEIQQEKMDKKQYIDHLSHQM ELLASES
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 96 | 96 | 5.8E-36 | ||
| SMART | 1 | 94 | 94 | 2.0E-56 | ||
| PANTHER | 2 | 484 | 483 | 8.6E-196 | – | |
| PANTHER | 2 | 484 | 483 | 8.6E-196 | ||
| SUPERFAMILY | 3 | 94 | 92 | 2.31E-33 | ||
| PRINTS | 5 | 28 | 24 | 1.9E-18 | ||
| Pfam | 5 | 94 | 90 | 4.1E-29 | ||
| PRINTS | 43 | 55 | 13 | 1.9E-18 | ||
| ProSitePatterns | 44 | 68 | 25 | - | ||
| PRINTS | 56 | 68 | 13 | 1.9E-18 | ||
| Coils | 129 | 149 | 21 | - | – | |
| MobiDBLite | 199 | 225 | 27 | - | – | |
| MobiDBLite | 433 | 452 | 20 | - | – | |
| MobiDBLite | 433 | 454 | 22 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Cellular component | Host cell nucleus | A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi3g1v0542200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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