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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0542400 |
| Transcript ID | LotjaGi3g1v0542400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | TOM1-like protein 2; TAIR: AT5G16880.1 Target of Myb protein 1; Swiss-Prot: sp|Q5SRX1|TM1L2_MOUSE TOM1-like protein 2; TrEMBL-Plants: tr|A0A0L9TAI5|A0A0L9TAI5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0542400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:95882073..95886307) extracted from Lotus japonicus Gifu genome v1.2.
GAGTATATAAATTAGTTTAATCATTATTTTGTGTGTATATATGTATTTATTGTCAATTAAAAAGTTTAATGTACGTTTAA AATTTTATTTTGGTTCCGCTCATATTAGTTTTCCTAGTTCCGCCACTGACCCAGGTTTGTTCGTGTGACATACAATGTGG TTGCATGACTTTAGATATCGAGTTTTGAGGGATTGTGTAGAGCTTGGGGACATATGTTGACATAAAAAGGTGCTGGTTTT GCTGAGTTGCGATGGTCTGGCAATCATAAGTATATTAGATATCCATGGACATTGTTAAATTGCTCCACATTAAAACGAAG TTATCTGCACAGTTGATGGTGGGTTAGCAACGCATTAAACGGTAAGAGACAAGAGAAGTTTTTCTATTCACAAAAATTGT AATGAATGCCCCAACCACCTACCTGATTAAAGAAATAGACATGATACCTAACTTGAAAGTTTGTTTTATCTGATCGACGT AAAGTACGAGGAATTGTAATTGAAAATGAGGACAAATAGTTGAATAGGACACAGTACTTTGGAATCCTGAGACTCCAAGG AACATTGAACCAACACTCCTTTACTCTGTCTTTATTCTTCTTCTACAACACCAGCTCCAAGTGTGTAAGGTATGCTTCTC TATCTTTCTCAACATTTTTCCATTCTGAAAGTATGTTTGGTTTCACAATTTGCACAAAGTCAAATGCATTTTGATTAGAA GTGATTTCAGAACATGTTATTGTGGAATCAAACATGCTATGTTGTTTCCTTTTCTTTTCATCCAAGCTATTTCATTTCAG GAGTAATCCAAAATGCACATAAAGTAAGCAGATTTTGAGGCCATCAAGGAAAGATGAGTGACAATTTGATGGAGAAAGTG AACGCCTTGGGGGAGCGCCTCAAAGTTGGTGGGGTTGAGGTGGGTAGGAAGATGAGTGCTGGAATGAGTTCTGTGAGCTT CAAGGTCAAGGAGTTTTTCCAGGAGCCAAACATGGCTGATAAACTTGTTGGGGATGCTACCTCTGAAGCCCTTGATGAGC CTGATTGGGGTCTCATTCTTCATATTTGTGACTTGGTATGTGTTTGGTTTCGCCTTGGTGAATCTCAGTATCTAATAGAT TTAAAATCCACCTTGGATAACAATATAGTGCATGTTTGGAAATCATTCTATAATTGATTATGAAGCCAAAATCAATTCTG CAGAGAAGCGTCTGAGTGTCGGATCCGAACTGATTATGAGAAAATAGAAGCTGATCCAAACATGCTAGTAGTTGTTTGAG AGTCAATTTGGAGAATTCCCAATTCCCAAAATTGATTCTGCTAGAAGCTAAAGATAGTAGCTTTTGTGTTGAACTTAATC AATTTAGAGATTTTACAACTAGATTTCACATCATTACTTTACGAAAATCACTTTTTTTTAATAAATGTATTCAAACATAA ATGACTTCACTCTCAACTCTCACTTTTACTATAATCAATTTTGTCAATCTCAGTTTTATCTAAAATCAATTGTGACAATG CTGGTCCAAACACAGGTTAATGCTGAAAAGCTCAACACTGGTGAAGTGGTCCGTGCAGTGAAGAAAAGGGTGGGGACTAA AAGTTCTAGAGGTCAGTACTTGGCTTTGGTTTTGCTTGAAGCATTGGTCAAGAACTGTGACAAGGCTTTCTTTGAGGTAG CAGCTGAGAGAGTCCTTGATGAGATGGTCAAGCTCATTGATGATCCTCAGAGTGTTGGTAATAGCAGGAACAAGGCTTTG ATGATGGTTGAGGCTTGGGGAAAGGCAACGACTGAGCTTCGCTATCTGCCTGTTTATGAAGAAACTTACAAGGTACTTTT AATTCTTTCCATCATTGTCAGCCAATAGCATGTCTAGTTACACGATTAACTTTGTGTTTGGATTAGTGTTGTCACAATTT ATTTTGATAGACCTGATTATGGTAAAAGTGAGTTGAAGTAAGTTGAAAAAGAAGTGATTTATGTTTGGATACATTTATGA GAAAGTGATTTTTTGCAGGATAATAATGTGAAATCAAGTTGTAAAATCTCTGAATTGATAATGCTTAGTGCAGAAGCTAC ACTCTCTACATTCTACACAGAGCTGATTTTTAGATTGAAATCAATTCAAGACGACTCCCAAACATCTATATATTGTCTTT CAAAAGTAATTTTACTCAATCAAAATTGATTCTGAGATGGGGAACCAAACACACACTAAATGCTTTAGAGCCACTTTTGA TTAAAAGCTGCAAGTCTTAGCTTCACAGTAAACTTGTCTAAATCGCTAAAATTAAACATGCTATAAATAAGAGAGACCAA AAATTACCAACATGAAGTCATTTGCTTGGACCAATTATGCCTATAATTGATATGCCAAAATACTCAAGTTGAACCATTCA GATAAATTTCTGGTTAATATATTCCTCTGAATGAAAATCATGATTTTTAGTAATTATATTAGTGTGATATATTTCTATTT TTGAACTTTCTTTGTCTATGAATCACTTTGTCATGAACCAACTCCCTTGTACAAGCTTTAAGCTGTTAGGCATAGATAAA GAGTGGAAGCCACAAACTGCTAGTTATAGATTATATGATCTTGGATACATTGTCATGAACAAACTCTATTTCAGAGTTTG AATGATTTTATGACATTTTTCTGTTGCAGAGTTTGAAATCAAGGGGGATTCGATTCCCTGGTCGTAACAATGAAAGCTTG GCTCCTATTTTCACTCCTCCTCATTCTGCCTCTGCTCCAGAGGCTGATATCAGTCTTGCACATCTTATTCAACAGGATGT TGTTCCTGTGCAAAGTTTTACCTCTAAACAAATAAAGGAAGCTTTTGATGTTGCAAGAAATAGCATTGAGCTTCTCTCTA CTGTGTTATCTTCTTCAAACCAGCAAGGTGTTTTGAAGGTATTTTATCTTGTTTTTATTATGCTATATACTAGTAGTTGC AGTCTTTGTGCTCCTTTTTGGAGGCTTTCATTTGAGTTTGACATAAATATATTTTGGACTATAATCTTCTAGTTATAGAT AGAACTTCATTTGCTTTAGCCTTTTCAATATCAATCAAATGAACTGAACACTATCCTAATATCCTTTCCTAAAGTAAGTT CTGGTGTAGAAAGAAATACCTAAAAATACAAGGCACTGGCAGAGCCAAATACAGACTCTACCCAACTTACAAACCACCTT GAATTTTGAATGGAGTGAGGGAATAAATAAGGCATCAAAAGTCATTTAGTTCTCAAGAATAAAACAATCAAAAGCTCAAT GTTACTGCATTAAAATAAAAATCTAAGTTGAACTTTTTACCTGTTATCCATTGAAGATAAGCTCAGACTTTGCAGCCAAA GATACCACACTTTTAGCATGTTTTGATCAACTTCTTTTTCATCCGGATAAATTCTGAAACCTGGAAACTACTCATATAAG TTTCTCCTCAAAGTTGATTTTGTCTTTCGAATTAATGGTAGAACATCTTCCAAACATGTGCTGAAACTGTTGGCAAGGTA AACATATCTTATCCTATTCATGACCAACTTAACTCTGTTTGCTATTTCCTTCCATGTGCATGCAGGATGATCTGACCACC ACATTAGTACAACAGTGCCATCAGTCCCAAACTACTGTCCACAGAATCATTGAAACCTCTGGGGATAATGAAGCACTGCT TTTTGAGGCCTTGCATGTGAATGATGAGATTCAGAAGGTTCTTTCCAAATATGAGGAGCTGAAGAAGCATGCAATTGTTC CACTTGAACCTCAACCAGCTATGATACCTGTTGCTCTTGAGCCTGATGAGTCACTGCCCTATTTTTCAAAAGAGGATGCC TTGATTAGAAAGCCAGCTGGTTCAAGAGTCCAGAGATTGAGCCAAGATGATGACATGATGGATGATCTTGATGAGATGAT TTTTGGCAAAAAGGGTGGGGATTCATCTGAATGGAGACAAGATCCAAACAAACAACAATCATCAAAATATGATCCCATCT CCTTCTAGTTTACCTATATAAATAGTTAGAATATATGTTTGGATAACTTATCTTTTTTCAGAATGAGAAGCTACTCACAG AAGCTTCACACCATAATTGATACAGACTTCAAAATGAATTATAAAAGGATTTCCAAACATGACAAAATCATATTATAGGA GTGTCCCTATGATTTGACGACTTGCTTGCTGCTTTCATTTCTATATGCTGATTATGAACTATGTTTAGATTCCGT
CDS sequence (LotjaGi3g1v0542400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTGACAATTTGATGGAGAAAGTGAACGCCTTGGGGGAGCGCCTCAAAGTTGGTGGGGTTGAGGTGGGTAGGAAGAT GAGTGCTGGAATGAGTTCTGTGAGCTTCAAGGTCAAGGAGTTTTTCCAGGAGCCAAACATGGCTGATAAACTTGTTGGGG ATGCTACCTCTGAAGCCCTTGATGAGCCTGATTGGGGTCTCATTCTTCATATTTGTGACTTGGTTAATGCTGAAAAGCTC AACACTGGTGAAGTGGTCCGTGCAGTGAAGAAAAGGGTGGGGACTAAAAGTTCTAGAGGTCAGTACTTGGCTTTGGTTTT GCTTGAAGCATTGGTCAAGAACTGTGACAAGGCTTTCTTTGAGGTAGCAGCTGAGAGAGTCCTTGATGAGATGGTCAAGC TCATTGATGATCCTCAGAGTGTTGGTAATAGCAGGAACAAGGCTTTGATGATGGTTGAGGCTTGGGGAAAGGCAACGACT GAGCTTCGCTATCTGCCTGTTTATGAAGAAACTTACAAGAGTTTGAAATCAAGGGGGATTCGATTCCCTGGTCGTAACAA TGAAAGCTTGGCTCCTATTTTCACTCCTCCTCATTCTGCCTCTGCTCCAGAGGCTGATATCAGTCTTGCACATCTTATTC AACAGGATGTTGTTCCTGTGCAAAGTTTTACCTCTAAACAAATAAAGGAAGCTTTTGATGTTGCAAGAAATAGCATTGAG CTTCTCTCTACTGTGTTATCTTCTTCAAACCAGCAAGGTGTTTTGAAGGATGATCTGACCACCACATTAGTACAACAGTG CCATCAGTCCCAAACTACTGTCCACAGAATCATTGAAACCTCTGGGGATAATGAAGCACTGCTTTTTGAGGCCTTGCATG TGAATGATGAGATTCAGAAGGTTCTTTCCAAATATGAGGAGCTGAAGAAGCATGCAATTGTTCCACTTGAACCTCAACCA GCTATGATACCTGTTGCTCTTGAGCCTGATGAGTCACTGCCCTATTTTTCAAAAGAGGATGCCTTGATTAGAAAGCCAGC TGGTTCAAGAGTCCAGAGATTGAGCCAAGATGATGACATGATGGATGATCTTGATGAGATGATTTTTGGCAAAAAGGGTG GGGATTCATCTGAATGGAGACAAGATCCAAACAAACAACAATCATCAAAATATGATCCCATCTCCTTCTAG
Protein sequence (LotjaGi3g1v0542400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSDNLMEKVNALGERLKVGGVEVGRKMSAGMSSVSFKVKEFFQEPNMADKLVGDATSEALDEPDWGLILHICDLVNAEKL NTGEVVRAVKKRVGTKSSRGQYLALVLLEALVKNCDKAFFEVAAERVLDEMVKLIDDPQSVGNSRNKALMMVEAWGKATT ELRYLPVYEETYKSLKSRGIRFPGRNNESLAPIFTPPHSASAPEADISLAHLIQQDVVPVQSFTSKQIKEAFDVARNSIE LLSTVLSSSNQQGVLKDDLTTTLVQQCHQSQTTVHRIIETSGDNEALLFEALHVNDEIQKVLSKYEELKKHAIVPLEPQP AMIPVALEPDESLPYFSKEDALIRKPAGSRVQRLSQDDDMMDDLDEMIFGKKGGDSSEWRQDPNKQQSSKYDPISF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 396 | 396 | 1.7E-208 | – | |
| PANTHER | 1 | 396 | 396 | 1.7E-208 | – | |
| PIRSF | 32 | 394 | 363 | 3.3E-95 | ||
| Gene3D | 41 | 201 | 161 | 6.8E-38 | ||
| SUPERFAMILY | 47 | 183 | 137 | 2.75E-34 | ||
| Pfam | 48 | 179 | 132 | 3.0E-24 | ||
| CDD | 48 | 177 | 130 | 4.36705E-36 | – | |
| SMART | 48 | 179 | 132 | 8.0E-27 | ||
| ProSiteProfiles | 55 | 183 | 129 | 36.043 | ||
| SUPERFAMILY | 181 | 311 | 131 | 7.32E-27 | – | |
| Gene3D | 220 | 314 | 95 | 1.0E-10 | ||
| ProSiteProfiles | 223 | 310 | 88 | 15.17 | ||
| CDD | 232 | 308 | 77 | 5.97397E-30 | – | |
| Pfam | 236 | 310 | 75 | 2.3E-17 | ||
| MobiDBLite | 347 | 396 | 50 | - | – | |
| MobiDBLite | 365 | 379 | 15 | - | – | |
| MobiDBLite | 380 | 396 | 17 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Intracellular protein transport | The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell. |
Expression pattern of LotjaGi3g1v0542400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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