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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0542600 |
| Transcript ID | LotjaGi3g1v0542600.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cellulose synthase-like protein; TAIR: AT3G03050.1 cellulose synthase-like D3; Swiss-Prot: sp|Q9M9M4|CSLD3_ARATH Cellulose synthase-like protein D3; TrEMBL-Plants: tr|K7K5F4|K7K5F4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0542600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:95895449..95900294) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCATCAAAACCATTCAAACAAAGCCGGTCATCTCTTTCAGCAGCTTCTGATGCATCTGAAGCCCAGAAGCCTCCTTT ACCTCCAACTGTAACATTTGCCCGAAGAACTTCCTCGGGGCGCTACGTCAATTACTCCAGGGATGATCTTGACAGTGAGC TGGGAAGTGAGCTAGGAAGTACTGATTTCATGAATTACACAGTGCATTTACCACCAACCCCTGATAACCAACCTATGGAT TTAACAGTCTCACAGAAAGTTGAGGAGCAATATGTATCAAACTCGCTATTTACCGGAGGATTCAACAGCATGACTAGAGC CCATCTAATGGATAAGGTGACAGAATCTAAAGCAAACCATCCACAGATGGCTGGTGTAAAAGGGTCTTCATGTGCAGTTC CTGGTTGTGATTGTAAAGTGATGAGCGATGAACGCGGTGAGGATATTCTTCCTTGTGAGTGTGATTTTAAGATATGTAGA GACTGCTATATAGATGCAGTGAAAACAGGAGATGGAATGTGCCTAGGATGCAAAGAGCCATATAAGAACACAGAGCTAGA TGAAGTGGCTGTGGATAATGGAAGGTCATTTCCACTTCTTCCGCCAAATGGGGGAGTGTCGAAAATGGAGAGGAGATTGT CCTTGATGAAGTCAACAAAATCAGCACTGATGAGAAGTCAAACTGGAGATTTTGATCACAATAGGTGGCTCTTTGAAACA AGGGGTACCTATGGCTATGGAAATGCAATTTGGCCAAAGGAAGGGAATTTTGGAAATGGAAAAGAGGATGGTGATGTTGT TGACCCAACTGAGTTGATGAACAAACCCTGGAGGCCACTTACAAGGAAACTCAAGATACCTGCTGCTATTCTGAGTCCAT ATCGGTACAAAACCTTTTTGTCTTTGATGCTGTTTACTTTTAAGATAAATTTTTTTTTTGGTTAATGCCATAAATGTTGT TTTTGGTCATACCAAGTTTTCTACTAATCAAACCATGAACTTACCTTTTGTTCTGAATGGCCATTTGGCTTCATTATACC TGACCCTATCGGAATGCAATATTTCATGATTGGGGAATTTTATAATATTTCAAGGTTGTGTTAGGCGTGCAACATTGGAT CCACAAAGTGGGTTAGGCCCCTCTCTGGACCTTGTGCATAGCGGGAGCTTTATAGTACCGGGTTTGCCCTTTTTGTGTTA GGCATGCGGCAGCCAACGTAAAATTAGTCGTATATTTAATATGGATCAGCCGACCTCACTTAGTGGGATAAGACTTTTGT TGTGTTGTCTTTTGCAATGATGAGATGATTGGTTTTGATAGAAATGTGCTCTGGACTCTATTTAAATGAATAGCATATAA AGGGGCAAAAAGCATGATTGATGGAGTTTTTCATTTAGATTATTTTGATAGAAGAATGGAAATTGGTTTTGATGTTTGGC TATTGTACCTTAGTTTTGAAGGAACAATATGGTTTCCATCTGTGTATTAGATCCTGATTATGTTTATGCAGTCCTTAACA CTGCCAAACTTGCAGTAATATATTAGCTTGTTTAACTTTATAACATTGCCTATAGTTCTATAATGTATTATATTCATGAA CATAAAGAATAATGTTCCTTAAACAAAAATCTATGTCTTCTAACAATTGTATTTCTTTCTGTTGCATCTGGTTTTACAGT CTCATCATTTTGGTTCGCTTCGTTATCCTAGTCCTGTTCCTGGAATGGAGGATCAGGCACAAAAATACTGATGCAATCTG GCTATGGGGTATGTCTGTGGTTTGTGAGTTATGGTTTGCTTTTTCTTGGCTTCTGGATCAACTTCCCAAGCTGTGCCCGA TAAATCGCTCAACGGATCTTAATGTTCTGAAGGAAAAATTTGAAACACCAAGTCCTACCAATCCTACTGGAAAGTCTGAT CTGCCAGGAATAGATATCTTTGTATCTACTGCAGATCCTGAGAAAGAACCACCTCTTGTCACTGCAAACACTATCTTGTC TATTTTAGCTGCTGATTATCCAGTTGAGAAGCTTTCTTGCTATGTTTCTGATGATGGAGGTGCACTTCTAACTTTTGAGG CAATGGCTGAAGCTGCCAGTTTTGCTAATGTATGGGTTCCATTCTGTCGTAAACATGATATAGAGCCTAGAAATCCTGAA TCATATTTCAGCTTGAAGCGAGACCCTTACAAGAACAAAGTGAAACCAGATTTTGTGAAGGATCGTAGACGGGTGAAGCG CGAGTATGATGAGTTCAAGGTCAGAATCAATGGTTTGCCTGACTCTATTCGCCGCCGGTCAGATGCCTTTCACGCAAGAG AGGAAATCAAGGCCATGAAACTTCAGAGACAGAACAAGGAAGATGAACCTATAGAAGCTGTAAAGATTCCAAAAGCAACA TGGATGGCTGATGGAACTCATTGGCCAGGGACTTGGTTGAACTCCTCAGCTGAGCATTCTAAGGGTGACCATGCTGGTAT AATTCAGGTACTGAGGCTGTGTTTGAAAGAGTTTATTTGAGTTTACTTATAGTAAAAACACTTATGCAAGTGTTTGGATA AACTTATGAACATAATTTATGATCTGCCTACAAGCTCTTTTGGGATTATTTTCATAAGTTTCTCATAATAGCTTATGAAT AAGCACTTATACATACCTAAAACAGTTTTGAGCTTAAGTTCAATAAACTTCTCAAAGAAGCTTATGAATATGTGATTAGT GCTTATTGTCATAATCACTTAATTAAGTTGTTTACCTAAATATACTCAAGTGTATGTTAGGTTTAGCATTGGAGCCAGTC CAAAACCATGATGTTAGCAAAAACTCTTGTCCATTAGCTTTTGCTCAGACCATGTTGTTAGGATTCTTGGGATTCCCAAT GTAAAGTCAAACTCACTATAAGTGCATATTTGGTTCCACGGTTTGCACAGAATCCAAAACACATTTAAGCTAAGACTTGT GGCTTCTAACAAGAAGTGATTCAAGAGCATTTCACCTTGGAACCAAACATGTTATAAGTAGTTTTTGTAGGAGTAATATC CAAGTGTGAAGATGAGAGTAAATAACTCATATTTGATGAATGATACAGGTGATGTTGAAACCTCCTAGTGATGAACCTCT TCTTGGAAATGATGATGATACAAAGCTCATTGACCTGACTGATATTGATATCCGTCTTCCCCTTCTTGTCTACGTTTCTA GAGAGAAACGTCCAGGCTATGATCACAACAAAAAAGCAGGTGCCATGAATGCCTTGGTCAGAGCCTCAGCCATCATGTCC AATGGTCCTTTTATACTCAACCTTGACTGTGACCACTACATCTACAACTCGAAGGCAATGAGGGAAGGCATGTGCTTTAT GATGGACCGTGGTGGCGACCGCCTTTGCTACGTTCAGTTCCCACAGAGGTTTGAAGGGATTGATCCCTCTGATAGATATG CTAATCACAACACTGTCTTCTTTGATGTAAACATGAGAGCCCTTGATGGTCTTCAAGGGCCAGTGTATGTAGGAACTGGT TGTCTTTTCAGAAGGGTTGCCCTTTATGGATTCGATCCTCCCCGAGCAAAAGAACACCATCCAGGTTTCTGCAGTTGCTG TTTTGGAAGGCGCAAGAGAATTGCTAGCCACAACACTGAAGAGAACCGAGCGCTGAGGATGGGTGATGATGACTCTGAGG ATGAAGAAATGAACCTGTCAACGTTCCCTAAGAAGTTTGGGAACTCAACTTTCCTCATTGAATCAATCCCAGTGGCAGAG TTCCAAGGCAGGCCACTCGCTGATCACCCTGCTGTGAAAAATGGGCGCCCTCCCGGTGCTCTCACCATACCCCGCGAGCT TCTTGATGCAGCAACCGTGGCAGAGGCCATCAGTGTGATCTCATGTTGGTATGAGGACAAGACTGAGTGGGGGCAGCGCG TCGGATGGATCTACGGATCAGTCACTGAGGATGTTGTCACCGGTTATAGAATGCACAACCGAGGATGGAAATCAGTTTAC TGTGTGACAAAGCGTGATGCTTTTCGCGGTACTGCTCCCATCAACCTCACTGATAGGCTGCATCAAGTTCTTAGGTGGGC TACAGGTTCAGTTGAGATATTCTTCTCCAGAAACAATGCATTTCTTGCAAGCCCCAGAATGAAAATCCTTCAAAGAATAG CATACCTTAATGTTGGAATCTATCCATTCACTTCTTTTTTCCTCATTGTCTACTGCTTCCTCCCTGCACTTTCCCTCTTC TCAGGCCAGTTCATTGTTCAAACACTCAGCGTCACTTTTCTCTCTTATCTATTAGGCATCACAGTGACACTGTGCATACT TGCTGTGCTTGAGATTAAATGGTCAGGGATTCAGCTTGAAGAATGGTGGAGGAATGAGCAGTTTTGGTTGATTGGAGGGA CCAGTGCTCATTTAGCTGCTGTGCTTCAAGGACTGCTCAAAGTGATAGCAGGCATTGAAATCTCCTTCACCTTGACCTCA AAATCTGGTGGTGATGATGTCGATGACGAGTTTGCTGATCTCTATGTTTTCAAGTGGACATCGCTCATGATACCACCCAT CACAATCATGATGGTTAACTTGATAGCAATTGCAGTCGGAGTGAGCAGGACCATATACAGCACCATACCTCAGTGGAGCC GTTTGCTAGGTGGTGTTTTCTTCAGCTTTTGGGTGCTGACTCATCTCTACCCTTTTGCTAAAGGTTTGATGGGAAGAAGA GGGAGGACACCTACCATTGTTTATGTGTGGTCAGGTCTCATAGCAATCACAATATCACTCCTTTGGGTTGCAATCAATCC CCCTCAAGGTGCCAACGAGATAGGTGGTTCATTCCAGTTCCCATGA
CDS sequence (LotjaGi3g1v0542600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCATCAAAACCATTCAAACAAAGCCGGTCATCTCTTTCAGCAGCTTCTGATGCATCTGAAGCCCAGAAGCCTCCTTT ACCTCCAACTGTAACATTTGCCCGAAGAACTTCCTCGGGGCGCTACGTCAATTACTCCAGGGATGATCTTGACAGTGAGC TGGGAAGTGAGCTAGGAAGTACTGATTTCATGAATTACACAGTGCATTTACCACCAACCCCTGATAACCAACCTATGGAT TTAACAGTCTCACAGAAAGTTGAGGAGCAATATGTATCAAACTCGCTATTTACCGGAGGATTCAACAGCATGACTAGAGC CCATCTAATGGATAAGGTGACAGAATCTAAAGCAAACCATCCACAGATGGCTGGTGTAAAAGGGTCTTCATGTGCAGTTC CTGGTTGTGATTGTAAAGTGATGAGCGATGAACGCGGTGAGGATATTCTTCCTTGTGAGTGTGATTTTAAGATATGTAGA GACTGCTATATAGATGCAGTGAAAACAGGAGATGGAATGTGCCTAGGATGCAAAGAGCCATATAAGAACACAGAGCTAGA TGAAGTGGCTGTGGATAATGGAAGGTCATTTCCACTTCTTCCGCCAAATGGGGGAGTGTCGAAAATGGAGAGGAGATTGT CCTTGATGAAGTCAACAAAATCAGCACTGATGAGAAGTCAAACTGGAGATTTTGATCACAATAGGTGGCTCTTTGAAACA AGGGGTACCTATGGCTATGGAAATGCAATTTGGCCAAAGGAAGGGAATTTTGGAAATGGAAAAGAGGATGGTGATGTTGT TGACCCAACTGAGTTGATGAACAAACCCTGGAGGCCACTTACAAGGAAACTCAAGATACCTGCTGCTATTCTGAGTCCAT ATCGTCTCATCATTTTGGTTCGCTTCGTTATCCTAGTCCTGTTCCTGGAATGGAGGATCAGGCACAAAAATACTGATGCA ATCTGGCTATGGGGTATGTCTGTGGTTTGTGAGTTATGGTTTGCTTTTTCTTGGCTTCTGGATCAACTTCCCAAGCTGTG CCCGATAAATCGCTCAACGGATCTTAATGTTCTGAAGGAAAAATTTGAAACACCAAGTCCTACCAATCCTACTGGAAAGT CTGATCTGCCAGGAATAGATATCTTTGTATCTACTGCAGATCCTGAGAAAGAACCACCTCTTGTCACTGCAAACACTATC TTGTCTATTTTAGCTGCTGATTATCCAGTTGAGAAGCTTTCTTGCTATGTTTCTGATGATGGAGGTGCACTTCTAACTTT TGAGGCAATGGCTGAAGCTGCCAGTTTTGCTAATGTATGGGTTCCATTCTGTCGTAAACATGATATAGAGCCTAGAAATC CTGAATCATATTTCAGCTTGAAGCGAGACCCTTACAAGAACAAAGTGAAACCAGATTTTGTGAAGGATCGTAGACGGGTG AAGCGCGAGTATGATGAGTTCAAGGTCAGAATCAATGGTTTGCCTGACTCTATTCGCCGCCGGTCAGATGCCTTTCACGC AAGAGAGGAAATCAAGGCCATGAAACTTCAGAGACAGAACAAGGAAGATGAACCTATAGAAGCTGTAAAGATTCCAAAAG CAACATGGATGGCTGATGGAACTCATTGGCCAGGGACTTGGTTGAACTCCTCAGCTGAGCATTCTAAGGGTGACCATGCT GGTATAATTCAGGTGATGTTGAAACCTCCTAGTGATGAACCTCTTCTTGGAAATGATGATGATACAAAGCTCATTGACCT GACTGATATTGATATCCGTCTTCCCCTTCTTGTCTACGTTTCTAGAGAGAAACGTCCAGGCTATGATCACAACAAAAAAG CAGGTGCCATGAATGCCTTGGTCAGAGCCTCAGCCATCATGTCCAATGGTCCTTTTATACTCAACCTTGACTGTGACCAC TACATCTACAACTCGAAGGCAATGAGGGAAGGCATGTGCTTTATGATGGACCGTGGTGGCGACCGCCTTTGCTACGTTCA GTTCCCACAGAGGTTTGAAGGGATTGATCCCTCTGATAGATATGCTAATCACAACACTGTCTTCTTTGATGTAAACATGA GAGCCCTTGATGGTCTTCAAGGGCCAGTGTATGTAGGAACTGGTTGTCTTTTCAGAAGGGTTGCCCTTTATGGATTCGAT CCTCCCCGAGCAAAAGAACACCATCCAGGTTTCTGCAGTTGCTGTTTTGGAAGGCGCAAGAGAATTGCTAGCCACAACAC TGAAGAGAACCGAGCGCTGAGGATGGGTGATGATGACTCTGAGGATGAAGAAATGAACCTGTCAACGTTCCCTAAGAAGT TTGGGAACTCAACTTTCCTCATTGAATCAATCCCAGTGGCAGAGTTCCAAGGCAGGCCACTCGCTGATCACCCTGCTGTG AAAAATGGGCGCCCTCCCGGTGCTCTCACCATACCCCGCGAGCTTCTTGATGCAGCAACCGTGGCAGAGGCCATCAGTGT GATCTCATGTTGGTATGAGGACAAGACTGAGTGGGGGCAGCGCGTCGGATGGATCTACGGATCAGTCACTGAGGATGTTG TCACCGGTTATAGAATGCACAACCGAGGATGGAAATCAGTTTACTGTGTGACAAAGCGTGATGCTTTTCGCGGTACTGCT CCCATCAACCTCACTGATAGGCTGCATCAAGTTCTTAGGTGGGCTACAGGTTCAGTTGAGATATTCTTCTCCAGAAACAA TGCATTTCTTGCAAGCCCCAGAATGAAAATCCTTCAAAGAATAGCATACCTTAATGTTGGAATCTATCCATTCACTTCTT TTTTCCTCATTGTCTACTGCTTCCTCCCTGCACTTTCCCTCTTCTCAGGCCAGTTCATTGTTCAAACACTCAGCGTCACT TTTCTCTCTTATCTATTAGGCATCACAGTGACACTGTGCATACTTGCTGTGCTTGAGATTAAATGGTCAGGGATTCAGCT TGAAGAATGGTGGAGGAATGAGCAGTTTTGGTTGATTGGAGGGACCAGTGCTCATTTAGCTGCTGTGCTTCAAGGACTGC TCAAAGTGATAGCAGGCATTGAAATCTCCTTCACCTTGACCTCAAAATCTGGTGGTGATGATGTCGATGACGAGTTTGCT GATCTCTATGTTTTCAAGTGGACATCGCTCATGATACCACCCATCACAATCATGATGGTTAACTTGATAGCAATTGCAGT CGGAGTGAGCAGGACCATATACAGCACCATACCTCAGTGGAGCCGTTTGCTAGGTGGTGTTTTCTTCAGCTTTTGGGTGC TGACTCATCTCTACCCTTTTGCTAAAGGTTTGATGGGAAGAAGAGGGAGGACACCTACCATTGTTTATGTGTGGTCAGGT CTCATAGCAATCACAATATCACTCCTTTGGGTTGCAATCAATCCCCCTCAAGGTGCCAACGAGATAGGTGGTTCATTCCA GTTCCCATGA
Protein sequence (LotjaGi3g1v0542600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASKPFKQSRSSLSAASDASEAQKPPLPPTVTFARRTSSGRYVNYSRDDLDSELGSELGSTDFMNYTVHLPPTPDNQPMD LTVSQKVEEQYVSNSLFTGGFNSMTRAHLMDKVTESKANHPQMAGVKGSSCAVPGCDCKVMSDERGEDILPCECDFKICR DCYIDAVKTGDGMCLGCKEPYKNTELDEVAVDNGRSFPLLPPNGGVSKMERRLSLMKSTKSALMRSQTGDFDHNRWLFET RGTYGYGNAIWPKEGNFGNGKEDGDVVDPTELMNKPWRPLTRKLKIPAAILSPYRLIILVRFVILVLFLEWRIRHKNTDA IWLWGMSVVCELWFAFSWLLDQLPKLCPINRSTDLNVLKEKFETPSPTNPTGKSDLPGIDIFVSTADPEKEPPLVTANTI LSILAADYPVEKLSCYVSDDGGALLTFEAMAEAASFANVWVPFCRKHDIEPRNPESYFSLKRDPYKNKVKPDFVKDRRRV KREYDEFKVRINGLPDSIRRRSDAFHAREEIKAMKLQRQNKEDEPIEAVKIPKATWMADGTHWPGTWLNSSAEHSKGDHA GIIQVMLKPPSDEPLLGNDDDTKLIDLTDIDIRLPLLVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDH YIYNSKAMREGMCFMMDRGGDRLCYVQFPQRFEGIDPSDRYANHNTVFFDVNMRALDGLQGPVYVGTGCLFRRVALYGFD PPRAKEHHPGFCSCCFGRRKRIASHNTEENRALRMGDDDSEDEEMNLSTFPKKFGNSTFLIESIPVAEFQGRPLADHPAV KNGRPPGALTIPRELLDAATVAEAISVISCWYEDKTEWGQRVGWIYGSVTEDVVTGYRMHNRGWKSVYCVTKRDAFRGTA PINLTDRLHQVLRWATGSVEIFFSRNNAFLASPRMKILQRIAYLNVGIYPFTSFFLIVYCFLPALSLFSGQFIVQTLSVT FLSYLLGITVTLCILAVLEIKWSGIQLEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTLTSKSGGDDVDDEFA DLYVFKWTSLMIPPITIMMVNLIAIAVGVSRTIYSTIPQWSRLLGGVFFSFWVLTHLYPFAKGLMGRRGRTPTIVYVWSG LIAITISLLWVAINPPQGANEIGGSFQFP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 34 | 34 | - | – | |
| MobiDBLite | 1 | 19 | 19 | - | – | |
| Phobius | 1 | 287 | 287 | - | – | |
| PANTHER | 52 | 1145 | 1094 | 0.0 | – | |
| PANTHER | 52 | 1145 | 1094 | 0.0 | – | |
| Gene3D | 114 | 196 | 83 | 4.9E-5 | ||
| SUPERFAMILY | 117 | 185 | 69 | 5.42E-9 | – | |
| Pfam | 133 | 182 | 50 | 1.5E-13 | – | |
| TMHMM | 286 | 308 | 23 | - | – | |
| Phobius | 288 | 309 | 22 | - | – | |
| Phobius | 310 | 320 | 11 | - | – | |
| TMHMM | 321 | 340 | 20 | - | – | |
| Phobius | 321 | 340 | 20 | - | – | |
| Phobius | 341 | 921 | 581 | - | – | |
| Pfam | 379 | 1138 | 760 | 0.0 | ||
| SUPERFAMILY | 394 | 741 | 348 | 5.77E-5 | ||
| Coils | 504 | 524 | 21 | - | – | |
| Gene3D | 578 | 721 | 144 | 1.7E-12 | ||
| Phobius | 922 | 946 | 25 | - | – | |
| TMHMM | 926 | 948 | 23 | - | – | |
| Phobius | 947 | 951 | 5 | - | – | |
| Phobius | 952 | 978 | 27 | - | – | |
| TMHMM | 961 | 980 | 20 | - | – | |
| Phobius | 979 | 1054 | 76 | - | – | |
| TMHMM | 995 | 1017 | 23 | - | – | |
| CDD | 1047 | 1139 | 93 | 0.00110327 | – | |
| TMHMM | 1047 | 1069 | 23 | - | – | |
| Phobius | 1055 | 1074 | 20 | - | – | |
| Phobius | 1075 | 1079 | 5 | - | – | |
| TMHMM | 1079 | 1101 | 23 | - | – | |
| Phobius | 1080 | 1101 | 22 | - | – | |
| Phobius | 1102 | 1112 | 11 | - | – | |
| Phobius | 1113 | 1133 | 21 | - | – | |
| TMHMM | 1114 | 1133 | 20 | - | – | |
| Phobius | 1134 | 1149 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Molecular function | Cellulose synthase (UDP-forming) activity | Catalysis of the reaction: UDP-glucose + ((1,4)-beta-D-glucosyl)(n) = UDP + ((1,4)-beta-D-glucosyl)(n+1). | ||
| Biological process | Cellulose biosynthetic process | The chemical reactions and pathways resulting in the formation of cellulose, a linear beta1-4 glucan of molecular mass 50-400 kDa with the pyranose units in the -4C1 conformation. |
Expression pattern of LotjaGi3g1v0542600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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