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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0543400 |
| Transcript ID | LotjaGi3g1v0543400.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Growth-regulating factor; TAIR: AT3G13960.1 growth-regulating factor 5; Swiss-Prot: sp|Q6AWY4|GRF5_ORYSJ Growth-regulating factor 5; TrEMBL-Plants: tr|I1LP40|I1LP40_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0543400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:95954945..95959316) extracted from Lotus japonicus Gifu genome v1.2.
ACTTGAACAACTTGGAGCATCGCGTTTCAGACACAATCAATCCCCACGCGCGCACTGTCCCAAACGAAGAAACAGAGCAA ACCCAAAAATGGTTCCGACAAAGCTCGATCTGAGTGTGATCCCATGTTTAGCTTCTGACCATGTTTGATTTTGATACAAC TACTCAACAACAACAACAACAACAACGGTGTCACATTATTGGTAGCATCAGAAGCAGTAGCAGTAGTGGATAACATGAAT AGCAGTGGTGGCAGTAGTAGCGGAACGATGATGATGGGTTTCAGCAATAGCAGCAGTTATAATAGGTCACCTTTCACTGT CTCTCAGTGGCAGGAACTGGAGCATCAAGCTTTGATTTTCAAGTACATGGTTGCTGGTCTTCCTGTTCCTCCTGATCTTG TCCTTCCCATTCAGAAGAGCTTTGACTCCATCTCACACACCTTCTTCCAACACCCTTCATGTTAGTAAGCTTTCATTGCT TTCTATTTTCTTCAAAAAATTAATGTCTTTACCTATTTTCTTTTTTTAGGGATGAGGGTATTATAATTTTGCTTTCTTTT CTGAAAATTAGTTTCATTCTTTCAATACCCATTTTCCTCAAATCCCCAAAGTTTTGTTCTTTAATCCACATTCCTTAGGC CCATTTGGAATCCTATTGAGTTCAATTCATTAGTTGTCAAAGATGCCATTTTTATGCTAGTACATGTTTTTCCCCAACCC TAGAAGCTGCATATATATAGAGATAGGTCATAGTTAATCCCTGAAAGACTCAATGAACTTATGGTGAGGGTACATTAAGC TTATTTGATGAACTTTTACCTTAGAAGGTGGCAAAAAATATTTTATCTTTCCAAATTTGTAGGGTTTTCTTTTATTTTTA GCAATTAAACATGCTATCTTAGTAATGTTTGTGCTATCTTCTATCCTGCATCTTTCCTACAGATTTTTGTTTTCCCATTC TGGATGAAGTTATTGTGAGAGGCACAGATTTGTAGTTGCTGATTGGTTTACTTTCCTTGTCTTCAGCTGCTTTCTATGCT TATAACTAAAAGTTACTAGTATTAGTACATTGCATATGCAGTTCAGGATTTTTTTCAGTATAGTCCATTTTGACCTTTTT TTCTGCCAAATGAATGCTCTTATTCAACATGGTGTGAATTGTGCCTGGAATGTTGGTATTAAAGTATCTGTGCAATGTGC ATAGCTAACTGTGCATGCAAATTTACAGTGAGTTATTGCTCCTTCTATGGGAAGAAGGTGGACCCAGAGCCAGGAAGATG CAGGAGGACTGATGGAAAAAAGTGGAGGTGCTCCAAGGAAGCGTACCCGGACTCCAAGTACTGTGAGCGCCACATGCACC GTGGCCGAAACCGTTCAAGAAAGCCTGTGGAATCTCAAACTATGACACAATCACCATCAGCCGTGACATCACTGACTGTC ACTGGTGGCAATAGCAGAACTGGAATTTTCCAGAACCTTCCCACAGATGCCTTTCGTAATCTCCAAGGTACTGGTTCTGG AACCGACCGAGCCGATTATCATCTAGATTCCATTCCCTATGGGATTCCAAGTAAAGAATACAGGTATATAAATCCTCAAT ATATTTTACTCTAGTTGATTTCTTAGAATTGGACAAATAATTTAGTTTGAAAGAATAGAGCAGAAAGCATCTCATTAATA CAGTCATGGCTTATTTAATGGAACTGCCTTTACTTCTTCATGTGCTTGAGTTGGAACACCTTTGTCTGAATTTACTGCAC TTTTTCCCACTTCCATTACTTTGCAAATAAATTTCTATTATGTAGTTAGTGATGCGCTTGTATCATGAATTACGAAGTGC AGAGATCTGCAGCACTAAAACTAGTTATTAGAATACTATTCGCTGCTGAAGTATCTACACCTTTGTGTAAATTGTCAAAA CTCAAAAGAAAGACTAAGCTGTTTGTTGTTACCTTGCATTGTTTCTGCTTCTGTAATTTTTTTTCTTTAGATTTTGAAAG GGGTATTCTAGCCCTTTGACTAAATCCCGAACAATTATTTTTGTTTGCTTTTGGTTGCTGCTTTGTGTTCTCTTTTCTAG TGCTTGGTGATTCTCTGACATGGTACTAGAATCAGGTGTCTTCATGAATCAAAATTTCTCCAAATCACTTCTTAATGGGC ACTCAGACAAAATTGTGAGGGAGAAAGATGGTCCTTTATGCATTCTGTTTTTTTTTTTTCCTTTCGTTCAGTTATTTCTG AAATATATTGTACCATAAAACATTTTATTGGGGCTAAACATTGAGAAACATTTTAGCATGCTAATATGTGGCTCTGCTTT CAACCTTCAGTATCTCTCATACAGGGAAAGTAGGTACACTTATTGAATGTCTTCCTGACTCTTTCTCTTGATGTCCAATC AAATGTATCTGCAAATTTTATTCTGTGCAACATTACTTTGTTCATTGTGAAAGCTTAAGTTGCAGATTCTAAGACTACAA AAAAAAGTACTTCTCTGAATATTTATACGACATCATAAATTATCACGCTATGCTGAGGGGCCTGTGGGAACAAAAGAAAA AGATTGGAACTCTTTCTTAGTTTTGCCTTCAGTCAATTTTGTGAGGGAGACTACAGTCATTAATAAGTTCACAGATATAT TGCACTCTGAAAGTTGTGAACTTGTGGTGGTCTTCAGTACCTTTCCTTTTTCCTTATGTTTCATTTCATCCAATTTAAGA GACATTTCCTTAGTAATCTCATCATATGATGATATTCGTTTTATTCAAATCATCATCTTTTCCATCATATATATTTATAG GCTATAGGCTATAGGCTATAGGCTATGAATTCATTCAAAATAATGAGATCTTGGAAAGCTTTAATTCATGGAATGATAGT TCCTTTCTGACTAGGATAGCATTGTGACCTTGTCTATACTGCGTTGCCGTCTTCAATTTGTTTCTAATGTAATATAGCAT CGTCTTGATATTTGTTTGTACTATTCAACTTGCCCAATGAAGCACCTTGTTCTATGCTTGGTTTTCATTTCATTAAATAT GGTTGGAACATGTTAGCAATATTGTTATTCAGCATCCCTTAAACTGCGGGTAATTTTTCTTGGAACTAAGCAGGTATCTT CAAGGGCTAAAATCTGATGGTGGTGAACGTAGCCTCTTTTCCGAAGCTTCAGGAAGCAGTAAGGTTCTCCAAATGGAGTC ACAGCTGGAAAATGCATGGCCTTTGATGTCAACCAGAGTTGCGTCTTTCTCTACATCAAAATCAAGCAATAACTCCATGT TGCAGAGTTACTATCCCCAGCATTCATTTCTATCCAGCGAATATCCGTCCGGGGAAGCTGTGAAGGAGGAGGGCCAGCCG CTTCGCCCTTTCTTCAATGAATGGCCTAAAAGCAGGGAGTCATGGTCTGGTCTGGAAGATGAGAGATCCAACCAAACAGC CTTCTCCACAACTCAACTCTCAATGTCCATTCCCATGTCATCTTCTGACTTCTCTGCAACCAGCTCTCAATCCCCACATG GTGAGATTTAGAGTGTGTTTGGATAAAAACTGAAAGTTCCAATGCAGAAAACGTAAAAGGAACAAATTTCCATTAACCTA AAAGTCATTTTAAATTGGTCTTAACTTTTTACCAAACATGCACTTAATATTTAGGTAAAGTTTCTTTCAGCTTGTAAGCA TCAATTAACTGAATCTTGTAATTTTTTGGTTGCAGATAACTAAGAGCTTTCCTTCAGGGTTTTCCATGCAAAGTGGTGGA AGGACCAACAGGTGTAGTACTAGTTGGATATGTGTGGTCCAAATAAGTCCTTTGTTCATGTATTTTTATTTTTATTTTTT ATTCAAGCTGAGCTGTGCACAACTTCATGTAACCTCAGCTGTTTGTTATATGCAAGACCAACTGCTACCCATCTAGTGTG TGGGTATTTGTAGAACCCCCAGAACATTTTTCCTTTTATATTCAATGAACAAACATAAACATTTCCTCCTGATTCAATAG ATGCAGTTACTTACCTAACCTGAAGGTGCAGTTACTTACCTAACCTGAAGGTGCAGTTACTTACCTAAGGTTCAAAACCG CCACAAATGTCAACTGGAGAAAAATTGAGAGGATTTCACTGGAGAGGATCCGGACCCGGCAATTGGATGCATTTATCCAT GCACTTCCACCATAACCATTGGTAGATTCTGGGCCCATTTTTCAATTTGAGATAAGTTAATAGGAATATCTTTTGTATGA AGTAATTCAAAATGTTCTTAGTCTGTTGTTGAGACATTTTAGAACTAGCCAAGTATGATGCCTGTAATTTAGTAATTTAC TAAATGCATTTCTTGAAATTCTTTTACAATCGATTCTAAAATCAAAATCAAT
CDS sequence (LotjaGi3g1v0543400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATAGCAGTGGTGGCAGTAGTAGCGGAACGATGATGATGGGTTTCAGCAATAGCAGCAGTTATAATAGGTCACCTTT CACTGTCTCTCAGTGGCAGGAACTGGAGCATCAAGCTTTGATTTTCAAGTACATGGTTGCTGGTCTTCCTGTTCCTCCTG ATCTTGTCCTTCCCATTCAGAAGAGCTTTGACTCCATCTCACACACCTTCTTCCAACACCCTTCATTGAGTTATTGCTCC TTCTATGGGAAGAAGGTGGACCCAGAGCCAGGAAGATGCAGGAGGACTGATGGAAAAAAGTGGAGGTGCTCCAAGGAAGC GTACCCGGACTCCAAGTACTGTGAGCGCCACATGCACCGTGGCCGAAACCGTTCAAGAAAGCCTGTGGAATCTCAAACTA TGACACAATCACCATCAGCCGTGACATCACTGACTGTCACTGGTGGCAATAGCAGAACTGGAATTTTCCAGAACCTTCCC ACAGATGCCTTTCGTAATCTCCAAGGTACTGGTTCTGGAACCGACCGAGCCGATTATCATCTAGATTCCATTCCCTATGG GATTCCAAGTAAAGAATACAGGTATCTTCAAGGGCTAAAATCTGATGGTGGTGAACGTAGCCTCTTTTCCGAAGCTTCAG GAAGCAGTAAGGTTCTCCAAATGGAGTCACAGCTGGAAAATGCATGGCCTTTGATGTCAACCAGAGTTGCGTCTTTCTCT ACATCAAAATCAAGCAATAACTCCATGTTGCAGAGTTACTATCCCCAGCATTCATTTCTATCCAGCGAATATCCGTCCGG GGAAGCTGTGAAGGAGGAGGGCCAGCCGCTTCGCCCTTTCTTCAATGAATGGCCTAAAAGCAGGGAGTCATGGTCTGGTC TGGAAGATGAGAGATCCAACCAAACAGCCTTCTCCACAACTCAACTCTCAATGTCCATTCCCATGTCATCTTCTGACTTC TCTGCAACCAGCTCTCAATCCCCACATGATAACTAA
Protein sequence (LotjaGi3g1v0543400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNSSGGSSSGTMMMGFSNSSSYNRSPFTVSQWQELEHQALIFKYMVAGLPVPPDLVLPIQKSFDSISHTFFQHPSLSYCS FYGKKVDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVESQTMTQSPSAVTSLTVTGGNSRTGIFQNLP TDAFRNLQGTGSGTDRADYHLDSIPYGIPSKEYRYLQGLKSDGGERSLFSEASGSSKVLQMESQLENAWPLMSTRVASFS TSKSSNNSMLQSYYPQHSFLSSEYPSGEAVKEEGQPLRPFFNEWPKSRESWSGLEDERSNQTAFSTTQLSMSIPMSSSDF SATSSQSPHDN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 24 | 330 | 307 | 6.5E-106 | ||
| PANTHER | 24 | 330 | 307 | 6.5E-106 | – | |
| SMART | 25 | 61 | 37 | 2.1E-12 | ||
| ProSiteProfiles | 26 | 61 | 36 | 24.395 | ||
| Pfam | 26 | 60 | 35 | 4.2E-16 | ||
| ProSiteProfiles | 87 | 131 | 45 | 25.762 | ||
| Pfam | 88 | 130 | 43 | 1.7E-21 | ||
| MobiDBLite | 119 | 146 | 28 | - | – | |
| MobiDBLite | 128 | 146 | 19 | - | – | |
| MobiDBLite | 289 | 331 | 43 | - | – | |
| MobiDBLite | 296 | 331 | 36 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Transcription, DNA-templated | The cellular synthesis of RNA on a template of DNA. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Biological process | Developmental process | A biological process whose specific outcome is the progression of an integrated living unit: an anatomical structure (which may be a subcellular structure, cell, tissue, or organ), or organism over time from an initial condition to a later condition. |
Expression pattern of LotjaGi3g1v0543400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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