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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0543900 |
| Transcript ID | LotjaGi3g1v0543900.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Methyltransferase; TAIR: AT1G64970.1 gamma-tocopherol methyltransferase; Swiss-Prot: sp|Q6ZIK0|GTOMC_ORYSJ Probable tocopherol O-methyltransferase, chloroplastic; TrEMBL-Plants: tr|Q4U3Z5|Q4U3Z5_LOTJA Gamma-tocopherol methyltransferase; Found in the gene: LotjaGi3g1v0543900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:96002227..96006394) extracted from Lotus japonicus Gifu genome v1.2.
CAGATGACAGTAACCTTCCTTCTCCAGGTGTGTGCTCAACTGGTGGTGTTGTGAGGGCACTGATGACTCTTCTGGTTTGC TTCTCATTTAGGTGATGAAGATGTTTTCCTTACTGAGATAATGGTCATAAAACCGGGCATGTCTTTTCGCTAGTAGAGAG AGTTCAAGAAGGTTTAGTGTGAGTGTGATTGCTCTAAGGTTTGTAGATCTCCTTTCGTCATGGTGGGTTGGGTGCCATTC CGATTTGAAGTGTAGAGATAGCATTGATCCTCAACTATTTCACTTGGATTGGTAGGTGTTGTTGATTCATGCATCTAAAA GTTGCAAGGTAGTAGTAGATAAACAGGTAGAGTTGGCTCATAGACAATGTTCTGAGAGACCCATCCTTCTTCTGTATTTA CTATTATTACTTCTGATAAGATAGAGAGGCTCATCCTTCTGCTTTGTTTATTATTATCAGTGATAAGAGAGAGACTCATC CTTCTGTTGTGTTTACTATTATCACTTCTGATAAGACGGTTAGTCAGAAAACTCTAAATAATCTGAAAAAGTTGGCCTCA TAAACAATGTTGAGTTTGTGTTTTGGGAGACTCATCCTCCTTCTACTGTGGTTACTATTATTACTCATGATAAGAGAGTT AATCAGGAAACTTTTTTCAATTTATTTTGTTTTGCATGTATCTCTTTTGAAGAAAAAAAAAACCTAAATTCCTAGGGTTT CACCAATTTAAGTAAAGCTTAACTCAACACATTAGTTACAATGAAACTCTAGTAAGCTTAGGAAGAGTGTACACATTACT CTTTAAGAAGGGGAGAAGGGGGTAGATAGATACGTATTAGAGTTGAAGTTGTAAGATATAGTCTGGCCCCCAAAATCAAA GTTTTACTAAGTTGAGCAAGAAGTAAATGTGAAATTCCCACCCACCAAACTTGTCACTAAGCACCTATTAAGTATCCTCA ATCAATTGGAATATCCTTTGCTGTTCAATTTTCTTGACTTGGAAAACTGCAACTCCATCCATCGAGATAAGATTTGCTAA ATTAAAGCAGGTACCGTTGAGCTCCTTTAATTTATTATATATATTCCTTTCCTTTTTTTAATAAAATTATCGCTTTGGTG GTGGCCACTTGCTGGCAAAGCATGGCCACGATGATGATGTCAATTTTTCCACCACCACCAAGCGTGGCTTCATTATTTAT ACTATCACACTGCACTCACACAATTCGTGTACAATCAACAACGCAGTTCACAGGTTTTTCTATAAGAACCAGAACACGTG ATTGTAGTAGAATTCTGTTAACAGAAGAACGAGAAATGGCGGTGATGGAGGAGAAGAAGCTTTTGCAGACCGGAATCGCT GAGTTCTACGACGAGTCGTCCGGGTTATGGGAAGACATGTGGGGAGACCACATGCATCACGGGTTTTACGAGCAGGATGT CACCGTCTCTGTTTCAGACCACCGTGTTGCTCAGATCCGAATGATTGAAGAGTCTCTTCGTTTTGCTGCACTTTCTGGTA ATCTTTCTTATGTGTTTGGTTTTCAGTTTAGAAGTTCCTTTGAGATGTTAAAATTCAATATTAAAATTTGAGATCTCACA TTCTATTGCCTTAAATCTGAAAGTAGTTTTGAACCTTCCATCTAATGAAAACACTTTTAAATTGAAAACCAAACATGCAT GCATGTAGTACTAAATCTGATTTGATTTGATTTGATTCCATTAATTAAACATTTGTGATTTGATTTGATTGATGAGATGT ATGTTTATTTTATTTAATGGTTTGAAATGGAGTGAGGGAGTGAAACTGACACGTAGTAATGATCTGAATCTGTTGTTTGT TTCTGAATGTCTGGTTTCAGAGGATCCAGCTAAAAAGCCAGAGAGTATAGTGGATGTTGGGTGCGGCATAGGAGGCAGTT CTAGGTACCTAGCTAAGAAATTTCAGGCAAAGAGCGTTGGTATCACTCTGAGTCCTGTTCAAGCTCAGAGAGCAAATGCT CTTGCTGCTTCTCAAGGCTTAGCTGACAAGGTCATTCACTGCCATTTTTACTTTTTCATCGCTCTAAAATTCTCAAATTC ATTCAGGGACACCTGCACAATGTCACACAATAGACTCTCCAATTAATTACATTATCAGAAATATGATTTTTATGTTACAT TATATTCTGAAAATTAGTTTCTTTAATGTAATTTTTGGAGGGTTTACTGATTATGACACTGTGAGTGCATAGGTGTCCAC TATATGTCTAGCATTCTCTTTATAAAACTATTCATGTAAACTGAACAAATTTGGGCTTCTACAAAAGTGGCTAATTAATG TTGGCATTCATGTTCATGTGATGGCAGGTTTCCTTTCAAGTTGCTGATGCTCTAGAGCAACCATTCCCTGATGGTCAGTT TGATCTGGTGTGGTCCATGGAGAGTGGAGAGCATATGCCTGACAAACCTAAGGTTTCAATATTTCTCTTAAACACCATTA ATTTGTGGTAGAACTGAATATTAATGTTTAAATTGCTTTAACGTAATGCATTTTTGGTGTATATACACCAAAATGAAGAG GATATGAGAAATAAGTGATAAATGTAATATATGAATATGATATATAAGAAAACGGAGAGAAAAACTTGAGTGTTTAGGAA GTGTTGATAATGTTGGCTGAATTGTTCTATAACTTCTGTTTTGTAAGCTGGTAATGTGATCTCACTATCTCAGTTTGTCT GCTTCACACAAAAATTTATAGTTTGTTGGCGAGTTAGCTCGGGTGGCAGCACCAGGTGGGACCATAATAATTGTAACATG GTGCCACCGGGATCTTGGACCAGCTGAAGAATCCCTGCAGCCATGGGAGCAGAATCTCTTGAAGAGGATATGCGATGCAT TTTACCTTCCAGCATGGTGCTCAACTGCTGATTATGTCAAATTGCTGGAATCCCATTCACTTCAGGTACACCAAATCAAA AATCCAAAACTCAACTATTTTCAATACATGTTTGGATATACAATGGAAAATCACGGTAGACATAAACATATTTTCTTAGT TTTTGCGAACTATTCACCATAATTTTGACACCCCCTTTGATTTTTCACAATTTATTCAAACATGCACTTAATAGTATTAC ACACCAAATTGCTTTTAATTAACATGCTGAATATCAATTTCTACTTAGGACATCAAATCAGCAGATTGGTCTCCCTTTGT TGCTCCATTTTGGCCAGCTGTGATACGCTCAGCATTTACATGGAAGGGTCTCACTTCACTGTTGCGCAGTGGTATATATA TAACCTCAACATTCACATATATTGTATTCAATCTCATTTTTATTTAAACATTTAACCAGGAACAATACCCTATATATCCA TCTTATTCTTCTCTCAAATACCCATCTCCTACTATATAGCACAGGTGTTGATTTGTATGTTGTTATATTTCTGGGCAGGA ATGAAAACCATAAAAGGAGCTTTGGCTATGCCATTGATGATAGAAGGATTCAAGAAGGGTGTCATCAAGTTTGCCATTGT TACATGTAGAAAGCCTGAAAATGTGGAGATAGAATAATTTATAGTATTTAATGACTCGAGTTTCCCATTGGTGATTGTTG ATGAATAATATATAGTTCAAATATTAGAGGAAGAATAAGATAGAATAAGTAACAGAGGATGAGAATTGTTGACGATAAAA CAAGATGTTATTGCTTCTACCAAGTCAAAACCTTTTGGGGGTTATTGGGGTGAGTGAAAATCAAGTGATGCAAGTCAGTT CATGTTGGGGAGCCTGCAATTAAACTAATGTAAGGTCCATTTCTTTAAGATGTTATTGCTTTAGCCTTAAGAGGTGGCAA AATACATTCTTTTCGTCAGATTTGGTTTTTGTTTTAAAGAAAGAAAGAATTTGGTTATTTACTAGGAAGTGGTATCATAT GGAATATTGGTTAAATATATAAATAAAATTGGAAAATGATGTAATATAAAGTATATAATAAAATAATAATAATAATAGTA ATAATAAACATCTTGTAACCAAAAAAATATTATAATAATGAACTAAAATAAAAGTTAGAGATGTTGAGTAATATGTTGAA TTAATGTTTAGTGGAAAGCTATGCATTTAGTGATTAGTGGAGTAATTATGCACGCATTAAATAAGTAGTGGTGACTCTTT GATTATTG
CDS sequence (LotjaGi3g1v0543900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGTGATGGAGGAGAAGAAGCTTTTGCAGACCGGAATCGCTGAGTTCTACGACGAGTCGTCCGGGTTATGGGAAGA CATGTGGGGAGACCACATGCATCACGGGTTTTACGAGCAGGATGTCACCGTCTCTGTTTCAGACCACCGTGTTGCTCAGA TCCGAATGATTGAAGAGTCTCTTCGTTTTGCTGCACTTTCTGAGGATCCAGCTAAAAAGCCAGAGAGTATAGTGGATGTT GGGTGCGGCATAGGAGGCAGTTCTAGGTACCTAGCTAAGAAATTTCAGGCAAAGAGCGTTGGTATCACTCTGAGTCCTGT TCAAGCTCAGAGAGCAAATGCTCTTGCTGCTTCTCAAGGCTTAGCTGACAAGGTTTCCTTTCAAGTTGCTGATGCTCTAG AGCAACCATTCCCTGATGGTCAGTTTGATCTGGTGTGGTCCATGGAGAGTGGAGAGCATATGCCTGACAAACCTAAGTTT GTTGGCGAGTTAGCTCGGGTGGCAGCACCAGGTGGGACCATAATAATTGTAACATGGTGCCACCGGGATCTTGGACCAGC TGAAGAATCCCTGCAGCCATGGGAGCAGAATCTCTTGAAGAGGATATGCGATGCATTTTACCTTCCAGCATGGTGCTCAA CTGCTGATTATGTCAAATTGCTGGAATCCCATTCACTTCAGGACATCAAATCAGCAGATTGGTCTCCCTTTGTTGCTCCA TTTTGGCCAGCTGTGATACGCTCAGCATTTACATGGAAGGGTCTCACTTCACTGTTGCGCAGTGGAATGAAAACCATAAA AGGAGCTTTGGCTATGCCATTGATGATAGAAGGATTCAAGAAGGGTGTCATCAAGTTTGCCATTGTTACATGTAGAAAGC CTGAAAATGTGGAGATAGAATAA
Protein sequence (LotjaGi3g1v0543900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAVMEEKKLLQTGIAEFYDESSGLWEDMWGDHMHHGFYEQDVTVSVSDHRVAQIRMIEESLRFAALSEDPAKKPESIVDV GCGIGGSSRYLAKKFQAKSVGITLSPVQAQRANALAASQGLADKVSFQVADALEQPFPDGQFDLVWSMESGEHMPDKPKF VGELARVAAPGGTIIIVTWCHRDLGPAEESLQPWEQNLLKRICDAFYLPAWCSTADYVKLLESHSLQDIKSADWSPFVAP FWPAVIRSAFTWKGLTSLLRSGMKTIKGALAMPLMIEGFKKGVIKFAIVTCRKPENVEIE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 295 | 295 | 154.986 | ||
| PANTHER | 7 | 294 | 288 | 7.6E-140 | – | |
| PANTHER | 7 | 294 | 288 | 7.6E-140 | – | |
| SUPERFAMILY | 13 | 295 | 283 | 9.36E-59 | ||
| Gene3D | 19 | 294 | 276 | 3.1E-57 | – | |
| CDD | 77 | 179 | 103 | 1.1531E-15 | – | |
| Pfam | 78 | 176 | 99 | 1.8E-21 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Methyltransferase activity | Catalysis of the transfer of a methyl group to an acceptor molecule. | ||
| Biological process | Methylation | The process in which a methyl group is covalently attached to a molecule. |
Expression pattern of LotjaGi3g1v0543900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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