Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0544600 |
| Transcript ID | LotjaGi3g1v0544600.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Glycerol-3-phosphate transporter; TAIR: AT3G47420.1 putative glycerol-3-phosphate transporter 1; Swiss-Prot: sp|Q9C5L3|GLPT1_ARATH Putative glycerol-3-phosphate transporter 1; TrEMBL-Plants: tr|A0A151TM19|A0A151TM19_CAJCA Sugar phosphate exchanger 2; Found in the gene: LotjaGi3g1v0544600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:96061045..96062776) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGTTCAGTACCAGAACTGTTGCCTGAGAAAAGTTGCAGTAAGCTCCTTGGGATTAGGGTCCTACAGCGCTTAAAAGG AAGTCCTGTTTCCTTCAAAACCCACCAAGCCATTGTTTTGATTGTAACATTTTTAGCTTATGCTAGTTATCATGCCACCA GAAAAACTACAAGTATTGTGAAGAGTGTCCTTGATCCTCAATCAAAGGATTTAGGATTGAATTTCTTTTCCTTGAGGCTA ACCAATAATGTTTCTGAGTCAACTGGATCAAGGAGAGTTTCTTCAAATCTTGGAGCTGGTTGGGCTCCATTTAATGGACC AGATGGGACATCCATTCTTGGTGAATTGGATGTTGCTTTTCTTGCAGTGTATGCGTTTGGGATGTATTTTTCTGGACATT TCGGTGACCGGTGTAATTTGAGGATTTTTCTAACAGTGGGTATGCTAGGAACTGGATTTTTCACTTCACTATTTGGTATA GGGTACTGGGCAAACATCCACAACTTCTACTACTATCTAATTGTGCAAATGCTTGCTGGATTGTTTCAATCCACTGGATG GCCGTCGGTAGTGGCTGTCGTGGGTAACTGGTTTGGAAAGAGCAAGAGAGGGTTGATCATGGGAATTTGGAATGCTCACA CTTCTGTTGGGAACATTGCTGGTTCTTTGATTGCTTCTGCTATGCTGGGATATGGATGGGGTTGGTCCTTTGTTGTGCCG GGACTGATTACCGCTCTCGTTGGTTTGGTGATTTTCCTTATATTGCCGGTGTCGCCCGAGTTAGCTGGAGCTGATAGAGA GGAAGATGATTATAGTTGTCCCAAAAAAGGTGGAGATGAAGTGACAGAGCCTCTGTTAAAGCAAGAAACTCCAGTTGTGG GGGAAGCAGTTGGGTTCCTAGAGGCATGGAAAATTCCTGGGGTTGCTCCTTTTGCCCTTTGTCTGTTCTTTGCAAAGTTG GTTGCATACACATTTCTCTACTGGCTTCCATTCTATGTTAGCCACACAGGTACTTGCACTTCCTTCTTGTTTTAAATTCT TCCTGATTGCAAATTTGAAGTTTACTTTTTGCCAATTGCAAAAAACAATCATACACTTATTATAATTCCATACTTTGAAT ATCTTAGTGAATTGTACCTTATGAAAATCTTTACTGATTGATGTTTGTTATAATGCAGCAATTGATGGAAAATATCTATC TAGTGAGACATCAGGAACCCTATCCACTTTATTTGATGTCGGAGGAGTGCTGGGAGGAATTCTAGCTGGCCACATTTCTG ATCGGTTAGATGCTAGAGCCATAACAGCAGCAAGTTTCATGTACTGTTCAATCCCAGCTCTCTTCTTTTACCGAAGCTAT GGACACGTTTCCCTGATCGTAAACGGAGCGCTGATGTTCGTCACGGGCATGTTTGTTAACGGTCCTTACGCTCTCATAAC AACCGCGGTTTCGGCTGACCTGGGAACACACAAATCATTGAAGGGAAATTCACGAGCTCTGGCAACCGTCACAGCTATCA TCGACGGAACAGGTTCCATAGGGGCTGCAATTGGACCGTTGTTAACCGGTTACATATCTGCAAAGAGTTGGAGTGCAGTT TTCACAATGTTGATGGGAGCAGCTCTAGTTGCAGGGCTGCTTCTAACCCGGCTTGTAATCGCGGAGGTAGCAACAAAGAT TGAAGAGTCAAGGTCTAATAGAACACAGGAACCACGTCCACTTGAAGTGTAA
CDS sequence (LotjaGi3g1v0544600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTTCAGTACCAGAACTGTTGCCTGAGAAAAGTTGCAGTAAGCTCCTTGGGATTAGGGTCCTACAGCGCTTAAAAGG AAGTCCTGTTTCCTTCAAAACCCACCAAGCCATTGTTTTGATTGTAACATTTTTAGCTTATGCTAGTTATCATGCCACCA GAAAAACTACAAGTATTGTGAAGAGTGTCCTTGATCCTCAATCAAAGGATTTAGGATTGAATTTCTTTTCCTTGAGGCTA ACCAATAATGTTTCTGAGTCAACTGGATCAAGGAGAGTTTCTTCAAATCTTGGAGCTGGTTGGGCTCCATTTAATGGACC AGATGGGACATCCATTCTTGGTGAATTGGATGTTGCTTTTCTTGCAGTGTATGCGTTTGGGATGTATTTTTCTGGACATT TCGGTGACCGGTGTAATTTGAGGATTTTTCTAACAGTGGGTATGCTAGGAACTGGATTTTTCACTTCACTATTTGGTATA GGGTACTGGGCAAACATCCACAACTTCTACTACTATCTAATTGTGCAAATGCTTGCTGGATTGTTTCAATCCACTGGATG GCCGTCGGTAGTGGCTGTCGTGGGTAACTGGTTTGGAAAGAGCAAGAGAGGGTTGATCATGGGAATTTGGAATGCTCACA CTTCTGTTGGGAACATTGCTGGTTCTTTGATTGCTTCTGCTATGCTGGGATATGGATGGGGTTGGTCCTTTGTTGTGCCG GGACTGATTACCGCTCTCGTTGGTTTGGTGATTTTCCTTATATTGCCGGTGTCGCCCGAGTTAGCTGGAGCTGATAGAGA GGAAGATGATTATAGTTGTCCCAAAAAAGGTGGAGATGAAGTGACAGAGCCTCTGTTAAAGCAAGAAACTCCAGTTGTGG GGGAAGCAGTTGGGTTCCTAGAGGCATGGAAAATTCCTGGGGTTGCTCCTTTTGCCCTTTGTCTGTTCTTTGCAAAGTTG GTTGCATACACATTTCTCTACTGGCTTCCATTCTATGTTAGCCACACAGCAATTGATGGAAAATATCTATCTAGTGAGAC ATCAGGAACCCTATCCACTTTATTTGATGTCGGAGGAGTGCTGGGAGGAATTCTAGCTGGCCACATTTCTGATCGGTTAG ATGCTAGAGCCATAACAGCAGCAAGTTTCATGTACTGTTCAATCCCAGCTCTCTTCTTTTACCGAAGCTATGGACACGTT TCCCTGATCGTAAACGGAGCGCTGATGTTCGTCACGGGCATGTTTGTTAACGGTCCTTACGCTCTCATAACAACCGCGGT TTCGGCTGACCTGGGAACACACAAATCATTGAAGGGAAATTCACGAGCTCTGGCAACCGTCACAGCTATCATCGACGGAA CAGGTTCCATAGGGGCTGCAATTGGACCGTTGTTAACCGGTTACATATCTGCAAAGAGTTGGAGTGCAGTTTTCACAATG TTGATGGGAGCAGCTCTAGTTGCAGGGCTGCTTCTAACCCGGCTTGTAATCGCGGAGGTAGCAACAAAGATTGAAGAGTC AAGGTCTAATAGAACACAGGAACCACGTCCACTTGAAGTGTAA
Protein sequence (LotjaGi3g1v0544600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGSVPELLPEKSCSKLLGIRVLQRLKGSPVSFKTHQAIVLIVTFLAYASYHATRKTTSIVKSVLDPQSKDLGLNFFSLRL TNNVSESTGSRRVSSNLGAGWAPFNGPDGTSILGELDVAFLAVYAFGMYFSGHFGDRCNLRIFLTVGMLGTGFFTSLFGI GYWANIHNFYYYLIVQMLAGLFQSTGWPSVVAVVGNWFGKSKRGLIMGIWNAHTSVGNIAGSLIASAMLGYGWGWSFVVP GLITALVGLVIFLILPVSPELAGADREEDDYSCPKKGGDEVTEPLLKQETPVVGEAVGFLEAWKIPGVAPFALCLFFAKL VAYTFLYWLPFYVSHTAIDGKYLSSETSGTLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCSIPALFFYRSYGHV SLIVNGALMFVTGMFVNGPYALITTAVSADLGTHKSLKGNSRALATVTAIIDGTGSIGAAIGPLLTGYISAKSWSAVFTM LMGAALVAGLLLTRLVIAEVATKIEESRSNRTQEPRPLEV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 29 | 29 | - | – | |
| PANTHER | 9 | 513 | 505 | 1.1E-286 | – | |
| PANTHER | 9 | 513 | 505 | 1.1E-286 | – | |
| PIRSF | 21 | 514 | 494 | 2.5E-125 | ||
| Phobius | 30 | 50 | 21 | - | – | |
| CDD | 36 | 499 | 464 | 0.0 | – | |
| SUPERFAMILY | 39 | 496 | 458 | 4.32E-61 | ||
| ProSiteProfiles | 41 | 501 | 461 | 25.563 | ||
| Phobius | 51 | 111 | 61 | - | – | |
| Phobius | 112 | 130 | 19 | - | – | |
| Pfam | 113 | 431 | 319 | 1.4E-37 | ||
| TMHMM | 118 | 135 | 18 | - | – | |
| Phobius | 131 | 141 | 11 | - | – | |
| TMHMM | 142 | 164 | 23 | - | – | |
| Phobius | 142 | 163 | 22 | - | – | |
| Phobius | 164 | 168 | 5 | - | – | |
| Phobius | 169 | 198 | 30 | - | – | |
| TMHMM | 174 | 196 | 23 | - | – | |
| Phobius | 199 | 209 | 11 | - | – | |
| TMHMM | 209 | 231 | 23 | - | – | |
| Phobius | 210 | 231 | 22 | - | – | |
| Phobius | 232 | 236 | 5 | - | – | |
| TMHMM | 235 | 257 | 23 | - | – | |
| Phobius | 237 | 257 | 21 | - | – | |
| Phobius | 258 | 307 | 50 | - | – | |
| Gene3D | 299 | 506 | 208 | 7.6E-36 | – | |
| Phobius | 308 | 329 | 22 | - | – | |
| TMHMM | 311 | 333 | 23 | - | – | |
| Phobius | 330 | 348 | 19 | - | – | |
| TMHMM | 348 | 370 | 23 | - | – | |
| Phobius | 349 | 370 | 22 | - | – | |
| Phobius | 371 | 376 | 6 | - | – | |
| TMHMM | 377 | 394 | 18 | - | – | |
| Phobius | 377 | 394 | 18 | - | – | |
| Phobius | 395 | 399 | 5 | - | – | |
| Phobius | 400 | 422 | 23 | - | – | |
| TMHMM | 409 | 431 | 23 | - | – | |
| Phobius | 423 | 442 | 20 | - | – | |
| Phobius | 443 | 465 | 23 | - | – | |
| TMHMM | 444 | 466 | 23 | - | – | |
| Phobius | 466 | 476 | 11 | - | – | |
| TMHMM | 476 | 498 | 23 | - | – | |
| Phobius | 477 | 497 | 21 | - | – | |
| Phobius | 498 | 520 | 23 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi3g1v0544600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…