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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0545300 |
| Transcript ID | LotjaGi3g1v0545300.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Aquaporin-like protein; TAIR: AT3G47440.1 tonoplast intrinsic protein 5;1; Swiss-Prot: sp|Q9STX9|TIP51_ARATH Probable aquaporin TIP5-1; TrEMBL-Plants: tr|A0A151TM76|A0A151TM76_CAJCA Putative aquaporin TIP5-1; Found in the gene: LotjaGi3g1v0545300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:96154121..96155090) extracted from Lotus japonicus Gifu genome v1.2.
ATGACAGGGAAGTTGATGCCTGATGCTTCACTGAACCCAACTAGTCTGGTTGTTTCTGCAATTGCAAATGCTTTTGCTCT GTCCTCTGTTTTGTACATTGCGTGGGACATCTCTGGCGGACACGTCAACCCGGCTCTGACCTTTGCAATGGCGGTGGGAG GCCACATTAGTGTTCCAACTGCACTCTTTTATTGGGTTGCTCAGTTAATAGCCTCTGTCATGGCTTGCCTTGTCCTCAGG GTCATTGTTGTTGGAATGGTAAATTTCCTCCCCTTTTCATTTGGTTAACATCTCTTTTTCAATTTTCATTTTTTACCTTT TGTCATCATCCACTATATGGAAGTTGAATACAATTCTACATTCACACTGTCAAGGAATCTGAGTGGTTAATCATGATCGG TTGACTCGTATTTCATAAGATCGGACGTTTCAGATAAACCTAAAATTTGAGAATGGCTTAGATTCCATGATTGCGCAAAT TTAGAAATTTTATGACTGCACCAAATCCAAATTCGTATGTGGGTTGAAGTGTTTAAAAATCAAATTTGTTACTTACTCTC TTCCCTTTGATGTGTTTGCAGCATGTTCCAACATACACTATTGCAGAAGAGATGACAGGTTTTGGAGCATCAGTACTAGA GGGTATCCTGACATTTGTTTTGGTGTACACTGTGTATGCTGCTAGGGACCCTAGGCGTGGTGCATTGAGTTCCACCGGAA CACTTGCAGTTGGCTTGATAGTAGGGGCAGGTGTCTTGGCCGCAGGTCCATTCTCCGGCGGATCACTGAACCCGGCTTGT GCTTTCGGTTCGGCCGCCATCGCCGGCAGTTTCAGGAACCAAGCAGTGTATTGGGTTGGACCCTTGATCGGTGCTACCGT AGCTGGCCTTCTTTATGACAATGTGGTGTTCCCTCCTCAGCCTTCAGATTCAATTAGAGGGGTAGAAATTGGGGTGTAAT GTTATGTTAA
CDS sequence (LotjaGi3g1v0545300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACAGGGAAGTTGATGCCTGATGCTTCACTGAACCCAACTAGTCTGGTTGTTTCTGCAATTGCAAATGCTTTTGCTCT GTCCTCTGTTTTGTACATTGCGTGGGACATCTCTGGCGGACACGTCAACCCGGCTCTGACCTTTGCAATGGCGGTGGGAG GCCACATTAGTGTTCCAACTGCACTCTTTTATTGGGTTGCTCAGTTAATAGCCTCTGTCATGGCTTGCCTTGTCCTCAGG GTCATTGTTGTTGGAATGCATGTTCCAACATACACTATTGCAGAAGAGATGACAGGTTTTGGAGCATCAGTACTAGAGGG TATCCTGACATTTGTTTTGGTGTACACTGTGTATGCTGCTAGGGACCCTAGGCGTGGTGCATTGAGTTCCACCGGAACAC TTGCAGTTGGCTTGATAGTAGGGGCAGGTGTCTTGGCCGCAGGTCCATTCTCCGGCGGATCACTGAACCCGGCTTGTGCT TTCGGTTCGGCCGCCATCGCCGGCAGTTTCAGGAACCAAGCAGTGTATTGGGTTGGACCCTTGATCGGTGCTACCGTAGC TGGCCTTCTTTATGACAATGTGGTGTTCCCTCCTCAGCCTTCAGATTCAATTAGAGGGGTAGAAATTGGGGTGTAA
Protein sequence (LotjaGi3g1v0545300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTGKLMPDASLNPTSLVVSAIANAFALSSVLYIAWDISGGHVNPALTFAMAVGGHISVPTALFYWVAQLIASVMACLVLR VIVVGMHVPTYTIAEEMTGFGASVLEGILTFVLVYTVYAARDPRRGALSSTGTLAVGLIVGAGVLAAGPFSGGSLNPACA FGSAAIAGSFRNQAVYWVGPLIGATVAGLLYDNVVFPPQPSDSIRGVEIGV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 204 | 204 | 3.0E-57 | ||
| Phobius | 1 | 11 | 11 | - | – | |
| PANTHER | 3 | 203 | 201 | 2.2E-102 | ||
| PANTHER | 3 | 203 | 201 | 2.2E-102 | – | |
| Phobius | 12 | 35 | 24 | - | – | |
| SUPERFAMILY | 12 | 201 | 190 | 1.24E-47 | ||
| TMHMM | 13 | 35 | 23 | - | – | |
| Pfam | 14 | 191 | 178 | 1.0E-45 | ||
| PRINTS | 23 | 47 | 25 | 2.8E-34 | ||
| Phobius | 36 | 46 | 11 | - | – | |
| ProSitePatterns | 41 | 49 | 9 | - | ||
| TMHMM | 45 | 67 | 23 | - | – | |
| Phobius | 47 | 66 | 20 | - | – | |
| PRINTS | 60 | 79 | 20 | 2.8E-34 | ||
| Phobius | 67 | 72 | 6 | - | – | |
| TMHMM | 69 | 91 | 23 | - | – | |
| Phobius | 73 | 94 | 22 | - | – | |
| Phobius | 95 | 99 | 5 | - | – | |
| TMHMM | 97 | 119 | 23 | - | – | |
| Phobius | 100 | 120 | 21 | - | – | |
| PRINTS | 105 | 123 | 19 | 2.8E-34 | ||
| Phobius | 121 | 131 | 11 | - | – | |
| TMHMM | 126 | 148 | 23 | - | – | |
| Phobius | 132 | 154 | 23 | - | – | |
| PRINTS | 137 | 159 | 23 | 2.8E-34 | ||
| Phobius | 155 | 173 | 19 | - | – | |
| PRINTS | 174 | 194 | 21 | 2.8E-34 | ||
| Phobius | 174 | 191 | 18 | - | – | |
| TMHMM | 174 | 196 | 23 | - | – | |
| Phobius | 192 | 211 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Channel activity | Enables the energy-independent facilitated diffusion, mediated by passage of a solute through a transmembrane aqueous pore or channel. Stereospecificity is not exhibited but this transport may be specific for a particular molecular species or class of molecules. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi3g1v0545300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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