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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0545500 |
| Transcript ID | LotjaGi3g1v0545500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | GRAS family transcription factor; TAIR: AT1G50420.1 scarecrow-like 3; Swiss-Prot: sp|Q9LPR8|SCL3_ARATH Scarecrow-like protein 3; TrEMBL-Plants: tr|V7AHA1|V7AHA1_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0545500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:96164402..96166789) extracted from Lotus japonicus Gifu genome v1.2.
CAATTCTGGATAGATAGATATCTCAGACTCGATCTATAGTTGCATCTGAAATTGTACAACTAACAAAGTACACAGTACAA ACCAATTACTGGTAAATTTCCGTTGTTGCCAAGAGCTAAATTCTGAAATTCGATTATGACAAGAACTTCAACCTTTTGCT CCCACCCCTTTAAAACTCAACACCAGAATACATATGCGGTTCTCTTGGGGGCATTGAAACGAAACCTCTAAGAATTTTTC ATCCTAGTTCTCAATTGGATTGAAAAAGCTTTATAAAAGTTGAGAGTTTGCTACCTTGATCAACTAATTAATTGGGCTCA GGTAATTAATAGGATCTCTACCTCTAATATGAAATTTGCCCTTCTTATGAGTAAGATTCTTCACATATCCTAATTTGATT TGGAGTGAGGGTGAGACTATGAAAGAAAATTATTATCTTATCATGTCGAATTCTAACCAAGTCTCTCTCTCAAAATCAGT TTTACACTTAGCGATCTAGATAGTGATTGAATTTTGTTATCATATCTTATCTTGTACACATTACTCTCTTACACTTACAC AGTTTCTTTTATTGATTCAGTTGTATCTCCAATGGAAGACAAGGGCTTAAAACTGGTCCATCTTCTGAAAGACACTGCAG TGTTTACTGAATCATGCAACTTCATCGATGCAGATATTGGACTGTACTATATTTCTCAGTTTGCAACCCCAGAAGGTGAT TCAATGCAAAGGGTAGCCACTTATTTCAGTGAGGCACTAGCTTGTTGCCAAGTGAGCAAAAACTTGAGAGGGGTACCAAA AGTTCTAAGTTTGTCAACAAAATTATCAACTCCAGAGGAACAACTTGTAAGAAATTTCTTCTTTGAGTTGTATCCATTTT TGAAGATTGCATACAAGACCACAAATCAGGCCATCATTGAAGCCATGGGACAAGAAAAATTTATCAATATCCTTGATCTC AGTGCATGTGATGCCACTCAGTGGATTTATCTTATGAAGAGTTTGAAAGAGCATTTACCAGACCCACCAGATGTGAAAAT CAAAGTTACATGCATACATGAGAAGTATGAGGTCTTAGAACAGATGGGATTGCATTTGAGACTAGAAGCTGAGAGGTTGA ATTTCGATTTCAAATTCAATGCTGTTGTGAGCACTTTGGAGAATCTAGACCTTGAAAAGTTGCCTTTGGAGAAGGGAGAG CCACTTGCAATAAGCTGTGTACTTCAACTTCACTCTCTTCTAGCCACTAGTGATGAAATGGTCAGAACCATGAACTACGC ACCTGCAGAAGCATCAATGAACCAATATGCACAAATGCTTGGGAAACAGAATAAGAACAAGAACAAGATCAATTCAAGTC CGGATTCAGCATTGTCACCCCTTTCTCTAAGTCCACCTAAGATGGAGTGTTTTCTAAATGGCCTGTGGAAGCTACAACCT AAAGTGATGGTGATCACTGAGCAAGAAGCCAATGTGAATGGCTCTACTTTGACAGATAGGATGGAGAATGCTTTGCAATT TTATGGTGCACTCTTTGATTGCTTGGAAGCTACCTTTCCTAGAACATTAGTGGACAGAACATTACTAGAGAAGATGCTAC TTGGGAAGCAAATAAAGAACATCATTGCATGTGAAGGAGTTGAGAGAAAGGAGAGGTATGAGGTGGTTCGGACATGGATC CCAAGGCTTCAATTGGCTGGATTTGGGATGGTATCAATCAGCCCCAATGGGATGATTCAGGCAAAAACCTTGTTGCAAAA CTATGTGGGTGGATATCATACTGTACAGGACAAGAATTGCTTGTTTATGTGTTGGGAGGGAAGACCTCTCTTTTCTATAT CAGCCTGGAAGTTTTAATGTGCTTGGATATCACTTGATCACAATGTAGCGAACTTTCATATCAATTCATTACACTATTCG TTTTGAAGTGGATGCTAATGTCTGTTTACACCGGTACTGATCTAGTAACATCCACACATAGTCTTAGAAGACTGTTGTTG GAACATGAAGTAACCTTATTTTATTACAATAAATAGTAATGATGTAATTGCAATTGCAAGCATGTGTGAGTGAGAATGTT TGATTGTGTGTGCACAATGCCACTTTATAACAGATAAATTTGGATCCATTTGTCAATGATTCATTTTATTTATGAGCTAT ATTGGTAAGGATTTTATAATCTGTTTAAAACAAGACAGGGGAGGGGATAAAGGAGGCATCAGTTATGTCATGTACTAAGG ATTATGTGTAAAGGATTGTTTGGCTTTGGTTCCATCAGCTTCATTAGTTATATTGGGTTTAATAGATTCTTCTGCCCTAA AACCAAGTAATGTTGTGCCGTTGGGATTTTAGACAGAGCGCCTGTTTTGTTTTCAATGTGAAATTTCG
CDS sequence (LotjaGi3g1v0545500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGACAAGGGCTTAAAACTGGTCCATCTTCTGAAAGACACTGCAGTGTTTACTGAATCATGCAACTTCATCGATGC AGATATTGGACTGTACTATATTTCTCAGTTTGCAACCCCAGAAGGTGATTCAATGCAAAGGGTAGCCACTTATTTCAGTG AGGCACTAGCTTGTTGCCAAGTGAGCAAAAACTTGAGAGGGGTACCAAAAGTTCTAAGTTTGTCAACAAAATTATCAACT CCAGAGGAACAACTTGTAAGAAATTTCTTCTTTGAGTTGTATCCATTTTTGAAGATTGCATACAAGACCACAAATCAGGC CATCATTGAAGCCATGGGACAAGAAAAATTTATCAATATCCTTGATCTCAGTGCATGTGATGCCACTCAGTGGATTTATC TTATGAAGAGTTTGAAAGAGCATTTACCAGACCCACCAGATGTGAAAATCAAAGTTACATGCATACATGAGAAGTATGAG GTCTTAGAACAGATGGGATTGCATTTGAGACTAGAAGCTGAGAGGTTGAATTTCGATTTCAAATTCAATGCTGTTGTGAG CACTTTGGAGAATCTAGACCTTGAAAAGTTGCCTTTGGAGAAGGGAGAGCCACTTGCAATAAGCTGTGTACTTCAACTTC ACTCTCTTCTAGCCACTAGTGATGAAATGGTCAGAACCATGAACTACGCACCTGCAGAAGCATCAATGAACCAATATGCA CAAATGCTTGGGAAACAGAATAAGAACAAGAACAAGATCAATTCAAGTCCGGATTCAGCATTGTCACCCCTTTCTCTAAG TCCACCTAAGATGGAGTGTTTTCTAAATGGCCTGTGGAAGCTACAACCTAAAGTGATGGTGATCACTGAGCAAGAAGCCA ATGTGAATGGCTCTACTTTGACAGATAGGATGGAGAATGCTTTGCAATTTTATGGTGCACTCTTTGATTGCTTGGAAGCT ACCTTTCCTAGAACATTAGTGGACAGAACATTACTAGAGAAGATGCTACTTGGGAAGCAAATAAAGAACATCATTGCATG TGAAGGAGTTGAGAGAAAGGAGAGGTATGAGGTGGTTCGGACATGGATCCCAAGGCTTCAATTGGCTGGATTTGGGATGG TATCAATCAGCCCCAATGGGATGATTCAGGCAAAAACCTTGTTGCAAAACTATGTGGGTGGATATCATACTGTACAGGAC AAGAATTGCTTGTTTATGTGTTGGGAGGGAAGACCTCTCTTTTCTATATCAGCCTGGAAGTTTTAA
Protein sequence (LotjaGi3g1v0545500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEDKGLKLVHLLKDTAVFTESCNFIDADIGLYYISQFATPEGDSMQRVATYFSEALACCQVSKNLRGVPKVLSLSTKLST PEEQLVRNFFFELYPFLKIAYKTTNQAIIEAMGQEKFINILDLSACDATQWIYLMKSLKEHLPDPPDVKIKVTCIHEKYE VLEQMGLHLRLEAERLNFDFKFNAVVSTLENLDLEKLPLEKGEPLAISCVLQLHSLLATSDEMVRTMNYAPAEASMNQYA QMLGKQNKNKNKINSSPDSALSPLSLSPPKMECFLNGLWKLQPKVMVITEQEANVNGSTLTDRMENALQFYGALFDCLEA TFPRTLVDRTLLEKMLLGKQIKNIIACEGVERKERYEVVRTWIPRLQLAGFGMVSISPNGMIQAKTLLQNYVGGYHTVQD KNCLFMCWEGRPLFSISAWKF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 420 | 420 | 65.834 | ||
| PANTHER | 5 | 420 | 416 | 5.5E-120 | – | |
| PANTHER | 5 | 420 | 416 | 5.5E-120 | – | |
| Pfam | 8 | 420 | 413 | 1.1E-95 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0545500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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