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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0545800 |
| Transcript ID | LotjaGi3g1v0545800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ubiquitin carboxyl-terminal hydrolase; TAIR: AT4G30890.1 ubiquitin-specific protease 24; Swiss-Prot: sp|Q9FPS3|UBP24_ARATH Ubiquitin carboxyl-terminal hydrolase 24; TrEMBL-Plants: tr|A0A127ZNN3|A0A127ZNN3_CAJCA Ubiquitin C-terminal hydrolase + Tagatose 6 phosphate kinase; Found in the gene: LotjaGi3g1v0545800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:96183825..96189857) extracted from Lotus japonicus Gifu genome v1.2.
TATAGGCCTAAAAAATTGGCCCAACTATTTTCATCCCTAATAAACAGCAGGAGAAGAAGCAATACCATAACATTCATCCT CCTCGCCGATAACCCTAACCCTAATTCAAGAATCGTCGATTTCAGAAACACCCTCTTTCTTCTTCTTCTCCCTGTCGATG CTCCGTTTTGATGTCACGAAGGTTCAAACAGGGAGGGTTCCATTGTTAAATGCTCTCTCTCTTCTTCCTCTGCTCACCTT TTCCCCTTTTCATGTCTTCAATTACCACCACCTCTTGTGCTCCTTCAGGGTCCTCCAAAACCCTACTTTTTGATTCCCAT CTCGTTTCCATACCCAAACCCTCTTCTCTATTTACTTTTTCCCTTTCAGGTTTGCAGTTTCGGTCCCTTCATCAACATGA GTGATTCTAAGGTTTGTTTTAAGCTACTATTCTGTTATTCAACTCAATGATAGAACTGTTAGTATATATAGTCTCTTACA ATAACTAACTAGACACTATAGAAGCTTCTATATGAAGCTTAACTAACTGCTCTAATACTATATTGATATGTATCTTAACA CTGTGTTTTCAATTTCTGCTTAATATATAATTAGTTGTTTTAATTGTTAATTTTGTTTTTGGTTGTGTGTGTAATGCTTA GCAGATGTTTCTATTTGGGTCATTTACTGAAGATGAAACCAAATCATTGTTGGTAAAGAAGTCTTCTGGTAAAAATGAAA AGCACGCGGAGAAGAAGCACCCGCTCCAATTCGGTTCTCTGAATTCTGTTACTGTTGAGTCAAACAACCTGTTAAATTCA TCAAATGCTCCCGATAGTGTTCCTCCTGCTGATTCTCTGAAATGTAATGGGGTGGCTATCACTGGTAACTTTCCTAAAGT ATCAGGAAGTATAAAAGAGAAAAAAGAGAATGGCAGCATTACCAATTTCTCCCTTAGCCCTTCAAGTGTGATTAGTGCAA ACCAAGTTAAAAAAAATAATGTGCATTCTGTTAAACCACTTGATGAAGATGGTCCCTCAAACCAATTTACAAATTTGAGC CTCTATGCTTCTGAGGATGAAAGCTTGAATGCTCATAAAATTGCCAGTGAGGATGATTCTTTATCTAAACTATCTGATCA AGACTCGAAAAAGGCACCTAATTGCCATGCTGTTGTTCATGTTAAGGATCTACTGCCTCGAGGCCTTATCAACTCTGGGA ATCTATGCTTTCTTAATGCAACCATGCAAGCCCTATTGTCTTGTTCTCCTTTTGTTCAGCTTTTGCAGGAATTAAGAACT CGTAACATTCCAAAGGTTAGTGTCTGCTGCTGCATAACAAATAATACTGCTGCCTGAGATTTTTTGCTTAACTCAAGGAT ATCATCGTGTTTGGTCCAAAATTTTTGAAACAGATATTGTTATGTCATTTCATTACATGCATTTAGATTGCTATTGTTAC CAGGGGAAACGTTGAGCTGATATTTGGCTTGCTTATTACTCTGTAATTTATCAGGTTGGCTATCCCACATTGACAGCATT TGCTGAGTTTTTAACTCAATTTGACATGCCAAGCGGAACACAATTGAAGAAGAAAGATTCTGATTCATTTGAGTTTGGAA AGCCATTTTGCCCTGTTATGTTTGAAGGTGTTCTGAAAAATTTTACTCCCGATGTGCCAAATAGCATTTCAGGAAGACCA AGGTTGGTAAGAATTAGGTTTTTTAATAGCATTTCTGTTGTTAAGTTTATCTTCCCTTCCCCCCAAAAGCAAGAATTTCC ACTAGCAAGATTTTTCAGTTGAATCACTTAATTTTTTGTGAGATATTAGTTATGTGTCTGTTCAAGTTACCAAGATCTAT GTGCAATTATTTTATTTTTGTATGGAATCATATTCATATGTTAAAAACATAATTTCCTTGCCAGAAAGTAATTCAGAAAT GGTTATAAATCTATCGCCTATAGGGTGATTGTTTGTAATTTCCTTTACACGGAGATGTACAATCTTTAGAAAGTTTCCCC CTTTTGAGTTTATATTTATTGTTAAAATTGTCAATAGCTTTTCTTCTCAATCCTCTTCCTCCTCCTCAATTGTGTTTTTG CTTTATATCTGTGCTACTTAAATAATTATCAGTAAGCTACCGTGTCGGTGATCTAGTAAATTAAGTAAGTTATATGGTAA TTGTGCTTGTGTGCAATACAATCACATGCCCAAGTATGATGTGTAATTGGCTCTCTGAACTTGCAATCTTAAGATATACT TGGTTTCAACACATCACTTACAGGCAGGAAGATGCTCAGGAATTTCTGAGCTTTGTAATGGATCAAATGCATGATGAACT ACTGAAGTTTGAAGGTCAGTCTTCAAGTCTTAATGGTAGCAGATCTTCCCTAGTTTCTTCTGTGGAGGATGATGAATGGG AAACAGTGGGGCCAAAGAATAAATCTGCTGTAACAAGGACTCAAAGTTTTGTTCCATCAGAGTTAAGTGGTATTTTTGGA GGGGACCTCAGAAGTTTGGTGACAACTAAAGGTACAAAATATAACTCTTAAATGGTTAGTGAAGAATTCGTTTGTCTTTA TTGTCATATACATCAAGATGTTGTCAAATTTCATCTGCTCGGTGTGTTGCATTATGCTGTATAGTTGTGATTCTGAACTT GTTCTTTCTTTTTACATTTTGCTGTTACCACAATTCGCCTTTCCTGCCATTTTTTATGTTAAGACTCAAAAGTGAAAGAG AGCAAAGAAAAGAAATAAAATACATTATGGCCATTAACATGATTTTTTCCTTCCGTTCAGGTAATAGAGGTTCTGCCACT ATTCAACCATATCTCTTACTCCATCTTGACATTTATCCTGATGCTGTCCACACTATTGAGGATGCTCTTCACTTGTTTTC TGCACCGGAAACTGTTGAAGGGTACCGAACATCAGTGACTGGGAAGGTATTTAACCCTTTATTTATTTTTGAATGCTTAA CTAGGTTTCTAACACAGTAACACTCATATTCGGTATATAAACAATTATGGCTTTGATTAGTGGACAATGATGCATTGTTG CCATTACCCATTCTTTTGGTAGTCTCGAATGGATGCGGTACTGGTGGTATGCATCGCACATGGCTACTACTCAGTACTCA TCTCTGTGAAAGCAACATTTTGAAGATGTAAACTGCTATGTTACTCCCTTTTATACTTTTTCATTGAAGAAAAATGATGT ATTTTATATTACTACTTTTAAAATACTCATATCATGTACATGTACCCCATATGAAATATGAATAATTCCACATATAGAAG TGATTTTTATCAACACTAACCAAGCAATAAATCAATTTACTCATACATTTTTGTCTAAAATCAATTGTTCAAAATGAAGT TCGTTTGAAAATTAAAATAAATAAATTTGACAAGCTCTTATCCAAACAGACTAAATATTTTTGAGTGCTTGGGTTTTATT ATTATAAAAATTATTTTTATGTTAGGATTTCAATATGTTAGTAATGATAAAACATTTCATGTTTCTTTCACCCAACTTCA GCTTTTATGACAGTTTATTCATAACATCAGAGCCTCTATGTCCATTAAAAGTCTTACTGTTAGCCATTGATATAGTATAG CTACCTTGTACTGGCCTGGTAATGGTGTTTGGTTGTGTTTTAAAATATTCTCTCTGCTACTGCTACTGAATACTAGTTTT CCTTTTTCAGCCAGGTGTTGTGACTGCAAAAAAATCTGTGCAGATACAGACACTTCCACGGATTATGATATTGCACTTGA TGCGTTTTGGTTATGGAAGCCAGGGAAGCACCAAGTTACATAAGCCTGTGCACTTTCCTCTTGAGTTGACTTTGCGTCGT GAGTTGCTTTTTTCTGCATCTACCGAGGTGATGTAACATCTCCCTTTATCCCAGTCCCTTTGTTTTGAACACAGGAATTA GTTTCCTTTAAGATTGTGATGGTGAATGATGGCTGGCCACCCTTTCTAGTTACTAGAATGCAATATTTCCTGAAGGATCT AGCTTTTCAGGAATTGAGTTGTCCAGATTTTTCATTATAAATTTGTTCCTTTACCAACATTTACTTCTCTTCCTTCTGTT CTTTTAAGATAATTTTTGGGATTCACCGAAAATAAAACATTTATGACGTCTTTTAAAAAAAATGCATGATACATCATTGT GATCATTGCTTACAGGATACTTCTTTTTATTACTTCCGTCCCCTGAAAGGGTCTAATTAGAAATTAACTTCTGGTGCTTT TTCTTTGGTGATGTAATTGTAGCTAAACAGGAAAAGGTTAAAGCTGTCCTCACATTTAAGAGTTATATACTACTGTTTTT AAGTAAATATTTTCTACTAATACCATTAAAACATGAAGTTCTTTATTAAGAAAGTATTTATTTACTTTTGTGGATTCTTG AAAGCTGCTTCTACGCAAATGACTTGTCAATCTTATCCACTAAGCATATTCAGTTTTCTTTTGATGCCAACAAAACACCA ACGAGGCTTTTTTTTCTTCCTTTCACGTTGGCACCGCGTAATGTGCAATCTCGATTTCCAATACCCCAAATGTGGGTTGG TTTTCAGCAGAAAACCAAGCATGCACATCTATCATGGTGAAAAACAAAAAAAATGCTTGTATCTTATCTTTATCTTCCAC TGCCTTCTGGATTTATATTTATATTTAACTAGTACTCTTAGTATTAATGGTAATTGGAAGAGGACATAGTGGCTGATAGA TTTGTATGGTTGTGCAGGGTCGAAAATATGAACTTGTTGCAACAATTACTCATCACGGAAGGGAGCCTTCAAAAGGGCAC TACACAGCTGATGCCCAGTACCCTAATGGTCTCTGGCTACGATTTGATGATGCATCTGTCTATTCTATTGGAGTAAATAA GGTGCTCCATGACCAGGCATATGTTCTGTTCTACAAACAGATATGAAAACATATATTGTTCAGTTGTTAACTACTCCCTT TTGCACCTGAGAAATTCTCTTCTGTCCGAAAGGATTGCCAGTCCATTAATGTTTTGTGTGGAGAAAACGTGAGTGTGCTC TCAAGGCTCCTCAGATTTCAAGATGTCATGAATGGTCGTTCCAATCTACGGTGTGATAAGAGTAATTGTTGTAACATTCT TTTCATGTTCTTTCAACTTGATAAGTTTTGTAGTCCTAGTATAGGGCATGGGCATGTAATTATAGTACAGTTAAAGGCTT ATATGAAAAATCTGCCTATGATAAAAATTTGCTGGTGTGCAAGATATTGGGAGTTTCCCACTGAGTTAAGAAATCTGATT TTAATTGCAAAAGTGCAGCTCAAAAAGAAAAACCCAACTAACATTTTAAATTGTTACTTTTCCAGCTACCTTATTGCTTG AAACTTTTTTAAATGAGGGACTTTCAAATTTGTCTGCAGACTGCCTGCTCCTGCATTTACTTTCTAGTGTTCTACTTGTT GCTCAAATGATTACTTAATTTCTTTTATAGGGCTCTTAGGTTTGTATTATTCTTCTTTCTCTCTCAGAAAGCAGAGGTTG GCAGAAATAATAGGTTGCATCTTTTTAATATCTAAAGAACATGAATACAATATATTTCTTATGTTCTTTAATGTGTCCAA ATTCTGCCTACAAAACAATGAAAATATGGCTTTAGGAGAGCTACGCAAATTAGGTTGTCCCTTTTGCTGGTTTCTGAATG GTGGCTTTTTAGATAATTTAAAGCAACGAGTTCCCTAGTTTTCAAGACTTTATGTGGTCCAGTGTGATAAACTAAGCTGC TTTTAGTTTCTCTGTACCAAATGGGCGGTGGAAGATGTCATTGTGAAGTGTAATCTCAAACAATCTCATTGTGGTCATCA GTTTTGCAGAAGCAACATTGCTGAAGTATTTTATATTTAGGAACATATAAGGTTAACATCACCTTTTCAAAAAAGGAAAA AATTTGCTTGGTATATTATGTGTACATTTTTCAAAGAATTAGAAAGCTGAAAGCTTCATGATCAGTTTTCCATTGGCTGT TGCTATTGGTTTTCATGACTTTCATGTTCTTCC
CDS sequence (LotjaGi3g1v0545800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTGATTCTAAGATGTTTCTATTTGGGTCATTTACTGAAGATGAAACCAAATCATTGTTGGTAAAGAAGTCTTCTGG TAAAAATGAAAAGCACGCGGAGAAGAAGCACCCGCTCCAATTCGGTTCTCTGAATTCTGTTACTGTTGAGTCAAACAACC TGTTAAATTCATCAAATGCTCCCGATAGTGTTCCTCCTGCTGATTCTCTGAAATGTAATGGGGTGGCTATCACTGGTAAC TTTCCTAAAGTATCAGGAAGTATAAAAGAGAAAAAAGAGAATGGCAGCATTACCAATTTCTCCCTTAGCCCTTCAAGTGT GATTAGTGCAAACCAAGTTAAAAAAAATAATGTGCATTCTGTTAAACCACTTGATGAAGATGGTCCCTCAAACCAATTTA CAAATTTGAGCCTCTATGCTTCTGAGGATGAAAGCTTGAATGCTCATAAAATTGCCAGTGAGGATGATTCTTTATCTAAA CTATCTGATCAAGACTCGAAAAAGGCACCTAATTGCCATGCTGTTGTTCATGTTAAGGATCTACTGCCTCGAGGCCTTAT CAACTCTGGGAATCTATGCTTTCTTAATGCAACCATGCAAGCCCTATTGTCTTGTTCTCCTTTTGTTCAGCTTTTGCAGG AATTAAGAACTCGTAACATTCCAAAGGTTGGCTATCCCACATTGACAGCATTTGCTGAGTTTTTAACTCAATTTGACATG CCAAGCGGAACACAATTGAAGAAGAAAGATTCTGATTCATTTGAGTTTGGAAAGCCATTTTGCCCTGTTATGTTTGAAGG TGTTCTGAAAAATTTTACTCCCGATGTGCCAAATAGCATTTCAGGAAGACCAAGGCAGGAAGATGCTCAGGAATTTCTGA GCTTTGTAATGGATCAAATGCATGATGAACTACTGAAGTTTGAAGGTCAGTCTTCAAGTCTTAATGGTAGCAGATCTTCC CTAGTTTCTTCTGTGGAGGATGATGAATGGGAAACAGTGGGGCCAAAGAATAAATCTGCTGTAACAAGGACTCAAAGTTT TGTTCCATCAGAGTTAAGTGGTATTTTTGGAGGGGACCTCAGAAGTTTGGTGACAACTAAAGGTAATAGAGGTTCTGCCA CTATTCAACCATATCTCTTACTCCATCTTGACATTTATCCTGATGCTGTCCACACTATTGAGGATGCTCTTCACTTGTTT TCTGCACCGGAAACTGTTGAAGGGTACCGAACATCAGTGACTGGGAAGCCAGGTGTTGTGACTGCAAAAAAATCTGTGCA GATACAGACACTTCCACGGATTATGATATTGCACTTGATGCGTTTTGGTTATGGAAGCCAGGGAAGCACCAAGTTACATA AGCCTGTGCACTTTCCTCTTGAGTTGACTTTGCGTCGTGAGTTGCTTTTTTCTGCATCTACCGAGGGTCGAAAATATGAA CTTGTTGCAACAATTACTCATCACGGAAGGGAGCCTTCAAAAGGGCACTACACAGCTGATGCCCAGTACCCTAATGGTCT CTGGCTACGATTTGATGATGCATCTGTCTATTCTATTGGAGTAAATAAGGTGCTCCATGACCAGGCATATGTTCTGTTCT ACAAACAGATATGA
Protein sequence (LotjaGi3g1v0545800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSDSKMFLFGSFTEDETKSLLVKKSSGKNEKHAEKKHPLQFGSLNSVTVESNNLLNSSNAPDSVPPADSLKCNGVAITGN FPKVSGSIKEKKENGSITNFSLSPSSVISANQVKKNNVHSVKPLDEDGPSNQFTNLSLYASEDESLNAHKIASEDDSLSK LSDQDSKKAPNCHAVVHVKDLLPRGLINSGNLCFLNATMQALLSCSPFVQLLQELRTRNIPKVGYPTLTAFAEFLTQFDM PSGTQLKKKDSDSFEFGKPFCPVMFEGVLKNFTPDVPNSISGRPRQEDAQEFLSFVMDQMHDELLKFEGQSSSLNGSRSS LVSSVEDDEWETVGPKNKSAVTRTQSFVPSELSGIFGGDLRSLVTTKGNRGSATIQPYLLLHLDIYPDAVHTIEDALHLF SAPETVEGYRTSVTGKPGVVTAKKSVQIQTLPRIMILHLMRFGYGSQGSTKLHKPVHFPLELTLRRELLFSASTEGRKYE LVATITHHGREPSKGHYTADAQYPNGLWLRFDDASVYSIGVNKVLHDQAYVLFYKQI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 537 | 534 | 1.1E-184 | – | |
| PANTHER | 4 | 537 | 534 | 1.1E-184 | – | |
| MobiDBLite | 23 | 38 | 16 | - | – | |
| MobiDBLite | 23 | 43 | 21 | - | – | |
| Gene3D | 171 | 537 | 367 | 1.4E-68 | – | |
| SUPERFAMILY | 183 | 536 | 354 | 1.12E-66 | ||
| ProSiteProfiles | 184 | 537 | 354 | 37.028 | ||
| Pfam | 184 | 534 | 351 | 1.5E-42 | ||
| ProSitePatterns | 185 | 200 | 16 | - | ||
| ProSitePatterns | 479 | 497 | 19 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Ubiquitin-dependent protein catabolic process | The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein. | ||
| Biological process | Protein deubiquitination | The removal of one or more ubiquitin groups from a protein. | ||
| Molecular function | Thiol-dependent ubiquitinyl hydrolase activity | Catalysis of the thiol-dependent hydrolysis of an ester, thioester, amide, peptide or isopeptide bond formed by the C-terminal glycine of ubiquitin. |
Expression pattern of LotjaGi3g1v0545800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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