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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0546300 |
| Transcript ID | LotjaGi3g1v0546300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-binding domain CCCH-type zinc finger protein; TAIR: AT3G51950.1 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein; Swiss-Prot: sp|Q0D3J9|C3H53_ORYSJ Zinc finger CCCH domain-containing protein 53; TrEMBL-Plants: tr|V7AH88|V7AH88_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0546300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:96246154..96250935) extracted from Lotus japonicus Gifu genome v1.2.
GTGAGAGAAATATAAAGGGTAACTGAGAAAGAGCTGAAGCATTCAACTCCAGACCAGTCTTGCAGCTCAGAGCCCCATAA AAGTCATAGCAGGGGCAGTGAGTGAGTGAGTGAGGCAATTGATGGTTCTTATTCTGTTCTGCTGCTTCTTGCTGCATCAT CTGCTACCAACCATGTCATAAGGCGGTGGTTTAGCTTTTGGAGTAAGTGTTGACTGCCATTGTGTGAGTGGAAAATAAAC TGTCTTCAAAGATAGTAACAAAGAGAGAGAAGGTTAAATCCTTTCATGGGTAGGAGGACAGTACTCTTCTTCTCATGTTT GTATTTCAAATTTAATTTGGAAAACAAAGTAGATTTTTAGAAGGAGCTTAACTTAACAAAAGAGGGGGAAGAGGAAATAA AAGGAAAAAAAGAGTCAACTTGTTCTTGTTTGTTTGTTTGTTTGTTAGTTTTCTTCTTTTGTTGCATCTGCAAACTAGTT TCCACTATTCATTCTTGCTTTATACAGAAATTCAACCACCATCTTCTGTCTCTCTTTCTTTTTCCTTTTATCAAAGGTAA CTCTTTGGTGGCATCCAACTCCTATTAATTAATCAACCACACGAGAATACTACTTTTATCACTTCACTTTCTTGCTTCCT TTTTCTTCTTTAACTTGCTTCTCTTTTCTCTTGTTCTGCTTCGCAGGAATATCAGAAAGAAACACTCTATGCCACCACTC ATCTCAACTTGGTAGGTAGGCTTGTGTCAATGGAGAATAGATAGAGAGAGAGAGAGAGACACAAACACACTCAACTCACA ACAAAAATTTGTTTTTTTTAGTTTGTTGTGAAACAAAGGAACAGCCTTTTCAACCCCCCATGGATTCTTACGAAGCTACT AGGATTGTGTTTTCAAGGATCCAAAACTTGGACCCTGAAAACGCTGCCAAAATCATGGGGGTGCTTCTGCTTCAAGACCA TGGTGAGAAGGAGATGATAAGATTAGCATTTGGTCCTGAAGCTCTTCTTCACTCTGTGATTATCAAAGCCAGAAAGGAGT TAGGATTTCCCTCGAACTCTCCGCCAACACCTTCAACTCCTCCATCTCCTTCTCCTTTCCTTTCAAGGCAAAGTAGTTCC ACTTCTTCTTCAAGGTTCAGTGGGATCAACCTTCCTCCATCTCTCACTATCCCAAACCCTTCTTGGTCTTCTTCAATGTC AGAGCTTCATAACCCAGAGGATTTGATGAGTCCATCATCTTCCTTACCTTTCTACCCAAATGGAAGTTCAGATCCAGTAG TGGATGATTTTCAGCTTCAAGACCAGCTTTCTTTCTTGAATGATGGTTCTCCTACTCTTGCTCACAAAAACAACAATCCT GATTTGTTCTACTCTCACTCTGACTTGTCTTCAAGTCCCACAGACTCTGGTCTCTTTCCTTCCTATGGCTGGGGAGGGTC TCTTCACAGGAGGAGTTGCTCTGTCAATGATGCTTGTTTGGGTTCTGAGGACCCAAATTCAGGGTTGGGGTGGAAGCCTT GCCTTTACTTTGCAAGAGGGTACTGTAAAAATGGTACTAGTTGCAGGTTCCTTCATGGAGGACTTGGTGATGGTGATGGT GCTGCAATTGTTGGGTCTCCCAGCAAGATTGAGATGATGGACCAGTGCCATGAGCTACTCAGATCTAAATCTGTTCAGCA ACAAAGATTGGCTGCTGCTACTTCTCAGCTCATGGCTTCTTCCACTTTCCCTTACTCATCTAAGTGCATGAATTTGCTTT TGCAGCAGCAACAGAATGACACTCAAAGGTAAAACAAAATTTTGAGTGCTTTGGTAGGGTGCTTAAGCTGCAAAGTTTTA ATGTTTGATTGATGATAATTGCAGGGCAGCAGCTGCAGCTCTTATGATGAGTGAGGATTTGCACAAGTTTGGAAGATCCA GGCTTGAAAGAAATGATTTCTCTTTGAACAGTCCTGGGATGGTTAACCCAGCTTCTAGACAGATCTACTTGACCTTCCCA GCTGATAGCACTTTCAGAGAAGAAGATGTTTCGAATTACTTCAGGTTGCTATTGTTGTGTAAAAGCTTCTAACAAGTTAG CATGCATGAAATGTTTACAGTTTTTAACTTTGTTTTTTCTTTGAAGCATTTTTGGACCTGTTCAAGATGTGAGGATCCCA TACCAGCAGAAGCGCATGTTTGGTTTTGTTACCTTTGTTTATGCTGAGACTGTTAAGCTCATTCTATCCAAAGGAAACCC TCATTTTGTGTGTGATGCTAGAGTGCTAGTTAAGCCTTACAAGGAGAAGGGCAAAGTCCCAGACAGGTACAGGCAGCCCC CTATCTTTCTAGTCTCTTGTTACCATTGTTTGACACATGCTTTTTGAAATGTGCTCATGTTACTCTTGGTTTGCAGGAAG CAACAGCAACAGGTAGATAGAGATTTTTCACCTTGTGGTACTCCTACAGGACTAGATGCTAGAGAACAATATGATCTTAA CCTTGGTATGTTAATGCTTTAACTTAACCTTCCATCAATGTTTTTGTTTCTTCAGAGCATGTGATCTTAAAATTATTCTT CTATGTTTTCAGGAGGTAGAATGTTCTACAATACTCAAGACATGCTGTGGAGGAGGAAGTTAGAAGAGCAAGCTGATCTG CAGCAAGCTCTTGAGCTCCAAAGTAGGAGGTTAATGGGGCTGCAACTTCTCGACATCAAGAAGCAACACCAACGTGCTTT TTCCTCTGGAAGTCCAATTCCTTCCCCAACCCACTCTCCTAATATGTTCAACCAAAATCTTGTTCTTCCTTCATTCCACC GAAGCTCAGACGCCTCAGATGGTATATTATTGTCTCCCTTTCACTTTACATGCTGTTTGATTGCAACTGCTTTTGAACTT GGTGCTTTTTGGGAAGTGGAATGAATTGGTTTTGGGGTTATTGTTATTTGATTCCAGAGAATGGTTCAAGTTCTGCTCCT GCTAGTACTGTATGTGCTTCTGTTGGTCAGCAAATTTCAGTTGGCAGAGAAGAAGTTGTTGTCAATGGGGAGAATGGAGA TAGTGAAGGCAGTAGCAAGCAGAGCTCAAGTCATGAAGAATTTGATTTGCAAGAATGGTATGAAACCTATTCTCATGTAG AATAACTAAAAGGGTACAAGTATAGTAAGCAACTTTTTGCATCAAGTTTCTCTTTTAGTCCATGCCAGAAAATCTCTGCA TTTATTCAGTTTTACCATTTATCTCAACTTTGATTGTCATTTAAAGTATGTTGTTGTATTTAATTGCAGTTTGGAGCATA ATCTCCCTGATAGCCCTTTTGCTTCCCCCACAAAAGCTGGTGGAGACTTTGTGGCTCCATTCTCCAATGGACCTATTGAG GCCATTTGTTCAGATGCCTCAGCTACATCTGCCAACTCTAAATCTGGTACCAGCACATTACTTCCACCATCAGCATCTGC TCTTGATATGGGGTCTTTTAAATCCTTTAACTGCCAATTACCAAGGTAACTGATGTCACACATTTGCTTTTCATGTCCAT TATTGTCAGCCTCCATAAAGTGCATTTTTGTGAACTCTTCAATTATTGATTCTAAAGTAAAATTCAATTCCATTTTGAGG AGATGCTTCTGCTTCTGTGAGAAGCTTCTGGGTTGTAGAATTTATTCTGATGAATTAGAAGATGATTCTAATTTTATGAC TTTTGATGATCTTGGTCTGGACTTTAGGTTCTCTTCCGGCCGTGGAACTATTGGGATGTTTGCCGGCACCGGTGGGCCGA TTGGCATTTAGTTTCTTGTGGCTCAGGTAAAGTAACTCTGGATCTTTATGTGAAAAGAGTCTTATTTGCATTTTTTTGTC TTCAAGTTTTGTTGTTTAGTTTATTAAATTTAGAAGTCGGTTTGGTCTTTTTTGCGAATTGTTCACAGGAATTGAACTTG ACCAAACAAACAAATCAGGACATATAACAAATCTGTAGAGAATCACCGCCACCGCGGCCATCACCATCATCACCACCATC AATTATCAATACTATACTACTTACTACCATACAAAAGTGCATACGTTAAAAGCAGTTTCAGTAAAGGAAGTGGGGCAGAC ATTTCACTTTCTTTAGTTAGCAGCATTATTGTACCATTTTCTTCCTCTCATATCTGTAGTAGCTGAACCACAGGTTAAAA ATAACAGAAAGAATCAATGTTGTATTTTCTTCATCCTTTTAACACCCCCTGGTGGATGTAGCAGTTTAGGTTGTTGTTAG TCCTATGTTGTTGTAGGTTTCAACTCTCAAGTCTTTGTACAGCTGAAGCTTTACTCAGAGAAAGCATGAACAGATGAAGT GGTTAAACAGTAAAATGCAGAGATGTGTAACTACAAGGCTGATTCAAAAAATTACTCCATAATTGGTAGGATGAGTTTGA GGGCCAGGAGGGAAGAGGGGATTGCTTAATTGTTCATATGTTGCAATTAAGCTTGTGTACTTCTACTTATTAATTGTAAT ACACAGTTATCAACCAACCAACCCCCTTGTGTTGTTACCAGACAAAAAAGAGAACAGGATTTAGAAAGAAGAAATTAAAA GCGAGTTGTTAGGCTAATTGGTCTATTTGCCTCTCCTCTTCTGAGCTTTTTGGTTTTAAAGGAAAATTTGTCTCTTTGTT CGTGCAATTATTTTTCGTTGTAAAATTTGTGGGATTTGTCTAATTTTTGCCATTATTGGAGAGGAGAGAAAGGGGTCCAC AAAACACTCCATCACATGGGGTATGCTGACACTGCAACTGGGCCATGCACATTTATAAAATA
CDS sequence (LotjaGi3g1v0546300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATTCTTACGAAGCTACTAGGATTGTGTTTTCAAGGATCCAAAACTTGGACCCTGAAAACGCTGCCAAAATCATGGG GGTGCTTCTGCTTCAAGACCATGGTGAGAAGGAGATGATAAGATTAGCATTTGGTCCTGAAGCTCTTCTTCACTCTGTGA TTATCAAAGCCAGAAAGGAGTTAGGATTTCCCTCGAACTCTCCGCCAACACCTTCAACTCCTCCATCTCCTTCTCCTTTC CTTTCAAGGCAAAGTAGTTCCACTTCTTCTTCAAGGTTCAGTGGGATCAACCTTCCTCCATCTCTCACTATCCCAAACCC TTCTTGGTCTTCTTCAATGTCAGAGCTTCATAACCCAGAGGATTTGATGAGTCCATCATCTTCCTTACCTTTCTACCCAA ATGGAAGTTCAGATCCAGTAGTGGATGATTTTCAGCTTCAAGACCAGCTTTCTTTCTTGAATGATGGTTCTCCTACTCTT GCTCACAAAAACAACAATCCTGATTTGTTCTACTCTCACTCTGACTTGTCTTCAAGTCCCACAGACTCTGGTCTCTTTCC TTCCTATGGCTGGGGAGGGTCTCTTCACAGGAGGAGTTGCTCTGTCAATGATGCTTGTTTGGGTTCTGAGGACCCAAATT CAGGGTTGGGGTGGAAGCCTTGCCTTTACTTTGCAAGAGGGTACTGTAAAAATGGTACTAGTTGCAGGTTCCTTCATGGA GGACTTGGTGATGGTGATGGTGCTGCAATTGTTGGGTCTCCCAGCAAGATTGAGATGATGGACCAGTGCCATGAGCTACT CAGATCTAAATCTGTTCAGCAACAAAGATTGGCTGCTGCTACTTCTCAGCTCATGGCTTCTTCCACTTTCCCTTACTCAT CTAAGTGCATGAATTTGCTTTTGCAGCAGCAACAGAATGACACTCAAAGGGCAGCAGCTGCAGCTCTTATGATGAGTGAG GATTTGCACAAGTTTGGAAGATCCAGGCTTGAAAGAAATGATTTCTCTTTGAACAGTCCTGGGATGGTTAACCCAGCTTC TAGACAGATCTACTTGACCTTCCCAGCTGATAGCACTTTCAGAGAAGAAGATGTTTCGAATTACTTCAGCATTTTTGGAC CTGTTCAAGATGTGAGGATCCCATACCAGCAGAAGCGCATGTTTGGTTTTGTTACCTTTGTTTATGCTGAGACTGTTAAG CTCATTCTATCCAAAGGAAACCCTCATTTTGTGTGTGATGCTAGAGTGCTAGTTAAGCCTTACAAGGAGAAGGGCAAAGT CCCAGACAGGAAGCAACAGCAACAGGTAGATAGAGATTTTTCACCTTGTGGTACTCCTACAGGACTAGATGCTAGAGAAC AATATGATCTTAACCTTGGAGGTAGAATGTTCTACAATACTCAAGACATGCTGTGGAGGAGGAAGTTAGAAGAGCAAGCT GATCTGCAGCAAGCTCTTGAGCTCCAAAGTAGGAGGTTAATGGGGCTGCAACTTCTCGACATCAAGAAGCAACACCAACG TGCTTTTTCCTCTGGAAGTCCAATTCCTTCCCCAACCCACTCTCCTAATATGTTCAACCAAAATCTTGTTCTTCCTTCAT TCCACCGAAGCTCAGACGCCTCAGATGAGAATGGTTCAAGTTCTGCTCCTGCTAGTACTGTATGTGCTTCTGTTGGTCAG CAAATTTCAGTTGGCAGAGAAGAAGTTGTTGTCAATGGGGAGAATGGAGATAGTGAAGGCAGTAGCAAGCAGAGCTCAAG TCATGAAGAATTTGATTTGCAAGAATGTTTGGAGCATAATCTCCCTGATAGCCCTTTTGCTTCCCCCACAAAAGCTGGTG GAGACTTTGTGGCTCCATTCTCCAATGGACCTATTGAGGCCATTTGTTCAGATGCCTCAGCTACATCTGCCAACTCTAAA TCTGGTACCAGCACATTACTTCCACCATCAGCATCTGCTCTTGATATGGGGTCTTTTAAATCCTTTAACTGCCAATTACC AAGGTTCTCTTCCGGCCGTGGAACTATTGGGATGTTTGCCGGCACCGGTGGGCCGATTGGCATTTAG
Protein sequence (LotjaGi3g1v0546300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDSYEATRIVFSRIQNLDPENAAKIMGVLLLQDHGEKEMIRLAFGPEALLHSVIIKARKELGFPSNSPPTPSTPPSPSPF LSRQSSSTSSSRFSGINLPPSLTIPNPSWSSSMSELHNPEDLMSPSSSLPFYPNGSSDPVVDDFQLQDQLSFLNDGSPTL AHKNNNPDLFYSHSDLSSSPTDSGLFPSYGWGGSLHRRSCSVNDACLGSEDPNSGLGWKPCLYFARGYCKNGTSCRFLHG GLGDGDGAAIVGSPSKIEMMDQCHELLRSKSVQQQRLAAATSQLMASSTFPYSSKCMNLLLQQQQNDTQRAAAAALMMSE DLHKFGRSRLERNDFSLNSPGMVNPASRQIYLTFPADSTFREEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYAETVK LILSKGNPHFVCDARVLVKPYKEKGKVPDRKQQQQVDRDFSPCGTPTGLDAREQYDLNLGGRMFYNTQDMLWRRKLEEQA DLQQALELQSRRLMGLQLLDIKKQHQRAFSSGSPIPSPTHSPNMFNQNLVLPSFHRSSDASDENGSSSAPASTVCASVGQ QISVGREEVVVNGENGDSEGSSKQSSSHEEFDLQECLEHNLPDSPFASPTKAGGDFVAPFSNGPIEAICSDASATSANSK SGTSTLLPPSASALDMGSFKSFNCQLPRFSSGRGTIGMFAGTGGPIGI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 678 | 678 | 5.2E-292 | – | |
| PANTHER | 1 | 678 | 678 | 5.2E-292 | – | |
| MobiDBLite | 62 | 131 | 70 | - | – | |
| MobiDBLite | 79 | 131 | 53 | - | – | |
| ProSiteProfiles | 215 | 242 | 28 | 13.206 | ||
| Gene3D | 216 | 284 | 69 | 1.2E-5 | – | |
| SMART | 217 | 241 | 25 | 9.9E-4 | ||
| SUPERFAMILY | 218 | 240 | 23 | 4.32E-5 | ||
| Pfam | 220 | 240 | 21 | 7.0E-5 | ||
| Gene3D | 295 | 440 | 146 | 1.1E-9 | ||
| ProSiteProfiles | 348 | 424 | 77 | 9.422 | ||
| SMART | 349 | 419 | 71 | 1.3E-7 | ||
| CDD | 350 | 419 | 70 | 6.206E-40 | ||
| SUPERFAMILY | 360 | 439 | 80 | 4.75E-12 | ||
| Pfam | 360 | 404 | 45 | 2.5E-5 | ||
| MobiDBLite | 425 | 447 | 23 | - | – | |
| MobiDBLite | 508 | 527 | 20 | - | – | |
| MobiDBLite | 535 | 554 | 20 | - | – | |
| MobiDBLite | 572 | 592 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. |
Expression pattern of LotjaGi3g1v0546300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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