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LotjaGi3g1v0546500.1

Overview

Field Value
Gene ID LotjaGi3g1v0546500
Transcript ID LotjaGi3g1v0546500.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Terpene synthase; TAIR: AT4G16740.1 terpene synthase 03; Swiss-Prot: sp|B9RXW0|TPS7_RICCO Alpha-farnesene synthase; TrEMBL-Plants: tr|I1MS82|I1MS82_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0546500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:96287768..96296075) extracted from Lotus japonicus Gifu genome v1.2.

AGCAACATGAATCAATCAGACATGAACCTGAACTATCTATGGCCTCATCAAGTTACAGAGAATACACGAAGATCTGCAAA TTATCAACCCAATATTTGGAGTGACACCTTTCTGCAGTCACTTGCCAGCAAATATAATGTGAGATTATAAATATATATAT GCTATTCCTTATTTTCTTTTTTCTGTTTTTATCTCATTACTTGGCCACTTCATTCTAGAGAATGCATAAGAGCATTTTTA CAACCACACAATTCATTATTTTGGTTTCTTAAACACTATTTCAATATTTCACACTATTTTTGTGGACATGTACTGACAAT TTAAGGAATTCATTAGAAACTGATGCATATTTTATTCCAACCACAATTTCTTATTTTATTATTACCTAGGTCTCAAAATA CCACATATATTTATAATTTTTATTTCCACACCTAATTTAGATTTACATGCGTCCCTATGACATTAGTTGATAAAGGTGAG ATAAACAATAATATTTTAAAGTAAGACACTAAAAAGTAGGCCTGTCTAGAAACTTTGGGCCCACCCGAAACCGACCGGCC CTCTACCAAAAAAGGTCATCAAGGTTCGGACGGGTCGGTTGGCAGGTTGGCTTATGGAAAAAAATCGGTTCGATTTGGTA TGGTTCGGTCGAGTTCAGTTTAGGGTCTGAACCGCCCGACCCGACCGAACCAACTATTAAATAAAAAAAACCTTACCACT TACCAGCCGGCCCAACCCAATCCCATAAAAAAAAACGTTCAGCCTAACCCTGACCATATATATTCAGAAACTGACCTAAC CCTAGCCACTCCACCACCTCTCTCACTCTCTGATTCTCAGCCGCAACTCCACTACCTCGCTCACTCAAGCCTCAGCTGCC ACTCCACCACCTCTCCCACTCTCTGATTCTCATAAACCCTAGCCACTCCACCACCTCTCTCACCCTCTGATTCTTAGCCA GCCGCCACCTCCACCACTTCATCGCTTCATCCTCCATGCTTTTCTCATCCGAGAGAGTTTGTTCATCTTCATTTTGCTCC AGAACGCCAACCATCGATTCTGATGTGAAATCGCATGGATGAAATGAACAATCTCTTTCGCATGAGGAAAGGAATGGAAA GCTTGTTCTTGGTGTCTCTAGATCTAATCTGAACAATCTCTTTCTGCTCTGAAATTGAATGAAATTAGGGTAGTAATGTG TGGGTAATTGTTTGCCAAAGATCTGGTAAGAAACCCGATAGAACCCGCCCGTTACCCGACCAACTTGAAACCGACCCAAA CCGAAACTTCTCACGGTCGGTTGCGGGCCCAGTTTTGTGTGTGTGGGCTAGGTCGGTTTAGGCTTTTTGGGCCCGAATCC GACCGAACCCGACCGATGGACAACCCTACCAAAAAGAAGTTCTTTGCCCAAGAAACAAATATTAAATTTTAAGGAAGTAG TCCACCTCAGTAAGCTCCAATGGTGCTTAAAAATAAGGCGCGAATCTTAGCATCTCCTGTTGGGCTAATGAACCGGAGTT GGAGATGCTCTAACAACACTTATGCACACATGGATTTGGATCACTTAAAGTAAAAGAATCTCACATTCACGCAATGAAGT ATTTTTAGTTGTCTGATTTTAATCGAACAACTTACATTTTAAATTGTACATCTGCTTCAAAATAATTATCCAAAAAGAGA AGAAACATACATACTAAGAAATGATATAAATATTGTTAACTTTTAAAAGCTTATTATTTGTTTTTATATTTTACCATTTA AAGTCTATCTTTATCTCTCCCCATTTATTACTCTCAAAGGCGTATTATATGGAAAAACATCAATTAATTCTTCCTTAAAA TTCTAAGTGGATAATTATTATGAAACAAATTTTCCAAGTAGATAATTATTTTGAAATAGATAAAATAATAAATAACTTGA TATATAACTCAAAATGCGAGTCATCTAATCTGATTGAACGATGAAATTAAGTTGCTTATGAAGCGATGCGAGATTCTCCT TAATTACCTTATTTGAGTTGTTGGTAGCATATGATCCATACAATCCTGTTACATAAATCACACTGCAACCCACAAATTTT TTCTATCTTTCTTCTTATCGCACATCACATCATCTATCACTTATCTTAATTTCTCTTTCATCTTTATTTGCGTGTCTGCC TTTCAAACATTATTGTAATTCAAAACATAGCAATTTCAGAAGCTAAAATTTTATTATTTTTCCATTTGAAGGGTAGTAGA TAACTTATAAAATATAATGAACCATTTTATTAATTGATTTTGTGAGGAATAATGAGAACCTTGTTTTTACACTTGGCTTC ATACTTTCTACCGCAGAAAAAAAAATTTGATATGCACTTAAAGAAATGGGTAATAAAAGTAAGGGGTCTTTTTGCTCAAG AGATGGATGTTTTGCAAAGACTAGAGTTGGTTGATTGGATCCAAAGACTAGGCCTTGCCAACTACTTTCAGAAGGAAATC AATGATGCTCTTGTCTCTACAAAAAACAGCAACAATTTCGGTACCCAAGATAATTTGCATGGATCTGCACTGTGCTTCAG GCTTCTAAGGCAGCATGGATACAAAGTTTTACCGGCCAGTAAGCATATATGATTGGGTTCTCAGTCAAATACTCTAAAAT TAGTTTTAATTTGAATCTTTGAGCCTTAATTAATGTATGTTTAAAAATCATTTTATAATTGACTAAAATTAACTTTAATT ATGAGGAGAAACTTTTGTAAGTATAACTTCTGGGTTCAAAATTTGATTACTAGAAAATAAAAAATGATCTAAATTAACAT GCCATTAACTTTTGATCGTAAACGTGATTTTTGATTATGTGTGAATGGTAAAACCAAAAGATGCATTACTATGTAAGTTA TTGAATTTTCATCTCATTACATCACCTCAAATTAACTTTTGGTTATTTCTAAAACATAGATATGCTAGGCAACTTCTTAG ATGAAAAGGGAATAGTGAAGAAGAAAAGTTCATTTGCTGATCATGGTAAAGATGTTATGGAGCTTCTTGAGGCCTCACAT TTGTGGTTAGAAGGAGAAAATATCTTGGATGGGGGTGGGGCCAAAAAATTTGCAACAAATTGGATTAAGGATGCTTCCTC TCTGTCCATCAATATCAACGATATTGTTGAAAGAGTGGTCCATGCTTTGGAGCTTCCATCCCATTGGAGAGTCTCATGGT TTGATGTCAAATGGCATGTTAGGCAATACCAAAAGGAGAAACATATGGACCCCATTTTGCTTGAATTGTCTAAATTAAAC TTCAACATAATTCAGGCCAAACTTCAAAAGGAGGTTAGAGAACTGTCAAGGTATACATCTTTTGAGAATATTTTTTTTTT TAAAAAATTGATAGTTCACACTTCACACTAACTTCTCTACATATCAATGTTACCAATTTTTCCTTTCCACCCCTATCTTA GTTTCCTAACAAGTCATGATTCGTGTATAATACTTCACTCTTATATTCTGCCTATATCTGAGTGTAAGTAAAATTGAGGT GAATAAATTATTTTCTAAAAAGATGTAGCGAAATGTATATATAAGACCACCAATTAATCTTTATTTTTTATTTAGGTGGT GGAAGAATATATTGGCCTCAAAATAGACTTGAGCTTTAATATCTTTATACTAATTTTTTTTTCTCTACTATCTCATTTTC TCTTAATATCTTTCTTTTTTCTTCAATACATCACTCACATCATATACATGACACTTATTTCTCTTCCTTCTATTTCTATC TCTTTGCATGTAGATAGAATTGAGGTGTGAAAAAGTTATTTATTTTTTTTTGACAGCAAAAATAAACTTTATTGAATAAG AGATTGAAAAGCACCATGAGAACAAGCCTCTCATAAGAGCAAAAAAACCAAACCACATAAAAAACTCCTTTTGGGGAAGC ACACTTGGGACAGAGCCTCATTAAAACCTTTATTAGGAAAACCCAGTGGGAAAAACCTAGTAAAGGAAAAAGAGTACTCA AATCACCAAGAGAATAAAACCCCCTAAAAAAACCCATTACACCCACCATTGAACTAACACCAAGACAAACCCTTATCTAC CAAAAATAACAATTACGTGGCCCAATCTGTTATAAAGCTTAAGACAATCCTCCAAACATACAGTAGCAGCAAACCAGCTC CCCATTAGTCACCAATTCAATAAGTTCCATCGAAACCTCGATATCAAACCACACCAACCAAGCATATAACAAGTTCATAG GTAAAAACCCACAGAAAACAAAATCACATGTCCGCAACCCCCATCCACCACAAATAAATCTCGAGGAAACAAACCAAGTG ACCTTCAATCAGTCACAAAAACACAACCTTCCCCATAAACATCATTGCAACTCATGATGATTTAATTGGATTTGATTCTT AAGTCTTTGAATCATCATCTCTTCATCACCATTGTAAACCACCCCCACCTGTTTCCCAACCTTCCATGTCTGTCGAGCCC TTGAATCCAGGTCCATAAAATCAAACTCATCGTCATAACACATTAAATCCACTTCCGCCTGTTGTTTTGACTTGTTCTTG CTTCCCCTTGGTCTTCCTCTCTTGGATGGGGGTGGGGCCAAAAATTTGCAACAAATTGGATTAAGGATGCTTCCTCTCTG TCCATCAATATCAACGATATTGTTGAAAGAGTGGTCCATGCTTTGGAGCTTCCATCCCATTGGAGAGTCTCATGGTTTGA TGTCAAATGGCATGTTAGGCAATACCAAAAGGAGAAACATATGGACCCCATTTTGCTTGAATTGTCTAAATTAAACTTCA ACATAATTCAGGCCAAACTTCAAAAGGAGGTTAGAGAACTGTCAAGGTATACATCTTTTGAGAATATTTTTTTTTTTAAA AAAAATTGATAGTTCACACTTCACACTAACTTCTCTACATATCAATGTTACCAATTTTTCCTTTCCACCCCTATCTTAGT TTCCTAACAAGTCATGATTCGTGTATAATACTTCACTCTTATATTCTGCCTATATCTGAGTGTAAGTAAAATTGAGGTGA ATAAATTATTTTCTAAAAAGATGTAGCGAAATGTATATATAAGACCACCAATTAATCTTTATTTTTTATTTAGGTGGTGG AAGAATATATTGGCCTCAAAATAGACTTGAGCTTTAATATCTTTATACTAATTTTTTTTTCTCTACTATCTCATTTTCTC TTAATATCTTTCTTTTTTCTTCAATACATCACTCACATCATATACATGACACTTATTTCTCTTCCTTCTATTTCTATCTC TTTGCATGTAGATAGAATTGAGGTGTGAAAAAGTTATTTATTTTTTTTTGACAGCAAAAATAAACTTTATTGAATAAGAG ATTGAAAAGCACCATGAGAACAAGCCTCTCATAAGAGCAAAAAAAACCAAACCACATAAAAAACTCCTTTTGGGGAAGCA CACTTGGGACAGAGCCTCATTAAAACCTTTATTAGGAAAACCCAGTGGGAAAAACCTAGTAAAGGAAAAAGAGTACTCAA ATCACCAAGAGAATAAAACCCCCTAAAAAAACCCATTACACCCACCATTGAACTAACACCAAGACAAACCCTTATCTACC AAAAATAACAATTACGTGGCCCAATCTGTTATAAAGCTTAAGACAATCCTCCAAACATACAGTAGCAGCAAACCAGCTCC CCATTAGTCACCAATTCAATAAGTTCCATCGAAACCTCGATATCAAACCACACCAACCAAGCATATAACAAGTTCATAGG TAAAAACCCACAGAAAACAAAATCACATGTCCGCAACCCCCATCCACCACAAATAAATCTCGAGGAAACAAACCAAGTGA CCTTCAATCAGTCACAAAAACACAACCTTCCCCATAAACATCATTGCAACTCATGATGATTTAATTGGATTTGATTCTTA AGTCTTTGAATCATCATCTCTTCATCACCATTGTAAACCACCCCCACCTGTTTCCCAACCTTCCATGTCTGTCGAGCCCT TGAATCCAGGTCCATAAAATCAAACTCATCGTCAGAACACATTAAATCCACTTCCGCCTGTTGTTTTGACTTGTTCTTGC TTCCCCTTGGTCTTCCTCTCTTTGCTTTAGGCTTGACCACTTTTCGACCTCCCCCAGCAGCACCGGGCCCTCCTACCCTT TTCCACCAATTAATGTTTTTTTATTTTTTATTTAGGTGGTGGGAGAATCTTGACCTCCAAAAAGACTTGAGCTTTGCAAG AAATAGGTTGGTTGAAAGCTTCATGTGTGCAGCAGGAGTTGCATTTGAGCCCAAGAATAAATCCATAAGGAATTGGCTCA CTAAAGTAATTATTTTCATCCTAGTGATTGATGATATTTATGACATACACGCCTTATTTGGAGAACTGGAGCTGTTCACA ATGGCATTTGATAGGTTTGTTTATTTCTAAGCCATTCAAAAACTAAGCTTGCTTATCACATGTTTCAAGTTACTTGAAAG AATTTCTCAATTTCATTACGTTCATGCATACAGATGGGATGCCAAAGAACTTGACGAACTTCCTGATTACATGAGGATTT GTTTCAATTCACTAAAAGATGTCACAAATGAAATTGCTTATGAGATTGCCGGAGAAAAGAACTTTGATATGGTGTTAGCT TACCTAAAGAAAGCGGTACTATTACTAATTAATCATAACTAATTTTGCTTAAGTGTCATTACATAGGGAACATATCAGGT GAGAGATCAATATATTTTATTTTCAAAATAGTGTCATAATTTTATGTTTTACTAATAAACTATTGTCATGTTAAATAAAA ATAGTAGTACATGACTGAATTAGATACAAATTTACATGATAGTTTTTAATTGTGATGTGAACATTTTATTTGTGAGATGG AGAATGAGACAATGAATTCAATCATATAATGTCACATTATTTTTGAAAAAGTCATATAACCACTAAACAATTTTTAATCT CAAACAATGTATATAATTGTACAGCAAAGATTTAGTATTTTCATCTCTCATACTAAAAACTTCTCTCAAGATACATCTCA CACACACATATACATTTATATATATATATATATATATATATATTCTTTTGTGTAAAAAAATACTAACAATATTTATTTTT CAATACTTTAATTCTTTAATTGATTAGTTAAAATTCATGTGAAATCTGCAAAAAATATAAGTTGCTTTTTTAAGTGAGAC CCAGATGAATATTAATCAATCAATTAAAGAGATTTGAAAAAAGAGAGTTAAAATAAGTGTTATTAACATTCTGCGTGTAA AAAGCCTAAAAGGCATATATATAGCAAATAAATAAATGAAACTAAATGTTGATAACTTATCAATGTCCCCCTTAACTTTA TAGTGGAGAGACTTCTGCAATGCATTATACACGGAAGCAAAGTGGTACAGAATGGGATACATTCCATCATTGCAAGAATA TCTCAGCAATGCTTGGATTTCTTCTTCGGGTCCAGTAATTCTCCTCCATTCATATTTTGCTACAATGCATGAAGTAGCCG ATGACATTGACAATTTTCTACACACATATGAAGATTTGATCTACAATGTATCTCTTGTAATTCGACTATGCAATGATTTA GCTACTTCAGTGGTAATTTACTAATTTTTCATTACCTCAAATAATTTTATTTTGTTAATTATTTCATTTTGCTATTTTAA TCAAATGATGTTAATATAGAATAAGGTATCATATGCAACAGGCTGAAAAGGAAAGGGGTGATGCTGCCTCGGCTATTTTG TGCTACATGAATCAAATGGGTGCTTCAGAGGAAGAAGCAAGAAAACATATCCACAACACCATAAACAATGCATGGAAAAG GATAAATGGGCATTGCTTCACACAAGATGCTTCAGTGGAGCCATTTCTTACTCAAGCCCAAAATGCTGCTAGAGTGGCCC ATACCCTTTATCTAAATGGTGATGGGTTTGGCATTCAGGACAGAGACATTAAAAAGCACATTTTATCACTGCTTGTTGAA CCCTTGTAGAAGTTTCTGGATCTTGCTCTCTCTTTTTTATGAAATGGAAGATGTGTGTTTTAGAGAAAAATGAAGTGTAG AATTATGGATCCATTATTATAAGTCAGTTGGTGATGATGCTTTAGCTAAGCATAGTCTAGGGTTAGACAATAGACAGTGC AACTACGTTATACTGAAGGGACTCGTAGGTTGTTTTCTTTTGTTTTTATTTTCGGTCTGCTAAGCACACCTAATTCATCG AAAAAAAAGTAAAATTGTGAGCTGAAATGTGCAATAAAATTTTCATTTCATATCCATGGATTTGAAAA 

CDS sequence (LotjaGi3g1v0546500.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAATCAATCAGACATGAACCTGAACTATCTATGGCCTCATCAAGTTACAGAGAATACACGAAGATCTGCAAATTATCA ACCCAATATTTGGAGTGACACCTTTCTGCAGTCACTTGCCAGCAAATATAATAAAAAAAAATTTGATATGCACTTAAAGA AATGGGTAATAAAAGTAAGGGGTCTTTTTGCTCAAGAGATGGATGTTTTGCAAAGACTAGAGTTGGTTGATTGGATCCAA AGACTAGGCCTTGCCAACTACTTTCAGAAGGAAATCAATGATGCTCTTGTCTCTACAAAAAACAGCAACAATTTCGGTAC CCAAGATAATTTGCATGGATCTGCACTGTGCTTCAGGCTTCTAAGGCAGCATGGATACAAAGTTTTACCGGCCAATATGC TAGGCAACTTCTTAGATGAAAAGGGAATAGTGAAGAAGAAAAGTTCATTTGCTGATCATGGTAAAGATGTTATGGAGCTT CTTGAGGCCTCACATTTGTGGTTAGAAGGAGAAAATATCTTGGATGGGGGTGGGGCCAAAAAATTTGCAACAAATTGGAT TAAGGATGCTTCCTCTCTGTCCATCAATATCAACGATATTGTTGAAAGAGTGGTCCATGCTTTGGAGCTTCCATCCCATT GGAGAGTCTCATGGTTTGATGTCAAATGGCATGTTAGGCAATACCAAAAGGAGAAACATATGGACCCCATTTTGCTTGAA TTGTCTAAATTAAACTTCAACATAATTCAGGCCAAACTTCAAAAGGAGGTTAGAGAACTGTCAAGGTGGTGGGAGAATCT TGACCTCCAAAAAGACTTGAGCTTTGCAAGAAATAGGTTGGTTGAAAGCTTCATGTGTGCAGCAGGAGTTGCATTTGAGC CCAAGAATAAATCCATAAGGAATTGGCTCACTAAAGTAATTATTTTCATCCTAGTGATTGATGATATTTATGACATACAC GCCTTATTTGGAGAACTGGAGCTGTTCACAATGGCATTTGATAGATGGGATGCCAAAGAACTTGACGAACTTCCTGATTA CATGAGGATTTGTTTCAATTCACTAAAAGATGTCACAAATGAAATTGCTTATGAGATTGCCGGAGAAAAGAACTTTGATA TGGTGTTAGCTTACCTAAAGAAAGCGTGGAGAGACTTCTGCAATGCATTATACACGGAAGCAAAGTGGTACAGAATGGGA TACATTCCATCATTGCAAGAATATCTCAGCAATGCTTGGATTTCTTCTTCGGGTCCAGTAATTCTCCTCCATTCATATTT TGCTACAATGCATGAAGTAGCCGATGACATTGACAATTTTCTACACACATATGAAGATTTGATCTACAATGTATCTCTTG TAATTCGACTATGCAATGATTTAGCTACTTCAGTGGCTGAAAAGGAAAGGGGTGATGCTGCCTCGGCTATTTTGTGCTAC ATGAATCAAATGGGTGCTTCAGAGGAAGAAGCAAGAAAACATATCCACAACACCATAAACAATGCATGGAAAAGGATAAA TGGGCATTGCTTCACACAAGATGCTTCAGTGGAGCCATTTCTTACTCAAGCCCAAAATGCTGCTAGAGTGGCCCATACCC TTTATCTAAATGGTGATGGGTTTGGCATTCAGGACAGAGACATTAAAAAGCACATTTTATCACTGCTTGTTGAACCCTTG TAG 

Protein sequence (LotjaGi3g1v0546500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MNQSDMNLNYLWPHQVTENTRRSANYQPNIWSDTFLQSLASKYNKKKFDMHLKKWVIKVRGLFAQEMDVLQRLELVDWIQ RLGLANYFQKEINDALVSTKNSNNFGTQDNLHGSALCFRLLRQHGYKVLPANMLGNFLDEKGIVKKKSSFADHGKDVMEL LEASHLWLEGENILDGGGAKKFATNWIKDASSLSININDIVERVVHALELPSHWRVSWFDVKWHVRQYQKEKHMDPILLE LSKLNFNIIQAKLQKEVRELSRWWENLDLQKDLSFARNRLVESFMCAAGVAFEPKNKSIRNWLTKVIIFILVIDDIYDIH ALFGELELFTMAFDRWDAKELDELPDYMRICFNSLKDVTNEIAYEIAGEKNFDMVLAYLKKAWRDFCNALYTEAKWYRMG YIPSLQEYLSNAWISSSGPVILLHSYFATMHEVADDIDNFLHTYEDLIYNVSLVIRLCNDLATSVAEKERGDAASAILCY MNQMGASEEEARKHIHNTINNAWKRINGHCFTQDASVEPFLTQAQNAARVAHTLYLNGDGFGIQDRDIKKHILSLLVEPL 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER 14 546 533 6.6E-196
PANTHER 14 546 533 6.6E-196
CDD 21 559 539 8.35511E-178
SUPERFAMILY 27 233 207 6.2E-43
Pfam 30 208 179 1.5E-32
Gene3D 46 248 203 3.7E-51
SUPERFAMILY 234 560 327 4.03E-93
SFLD 236 559 324 0.0
SFLD 236 559 324 0.0
Pfam 239 504 266 1.0E-90
Gene3D 249 560 312 1.4E-116

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Magnesium ion binding Interacting selectively and non-covalently with magnesium (Mg) ions.
Molecular function Terpene synthase activity Catalysis of the formation of cyclic terpenes through the cyclization of linear terpenes (e.g. isopentenyl-PP, geranyl-PP, farnesyl-PP and geranylgeranyl-PP) containing varying numbers of isoprene units.
Molecular function Lyase activity Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.

Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0546500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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