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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0549100 |
| Transcript ID | LotjaGi3g1v0549100.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cytochrome b5; TAIR: AT5G09680.1 reduced lateral root formation; Swiss-Prot: sp|Q9LXD1|RLF_ARATH Cytochrome b5 domain-containing protein RLF; TrEMBL-Plants: tr|I3S1V2|I3S1V2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0549100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:96596007..96599863) extracted from Lotus japonicus Gifu genome v1.2.
GAGAGATAGAAAGAATAGAAAAAGTAAGAAAGAGAAAATATGAGATGTGATAGATGATAAGATGAGAGAGATAGAAATAA AAAGAGGTGGAAATGAAGTGTTTAAAAAATGAGGTGTGTATATATCATTACTCATTGATAAATGCATATAGCAATAGCAT GCAGCTGATAAATTAAAACCCTGATGACAATTTACAATGCGATAGCGATAGGCAAAGTAAAAACAAAATACTTGTCAACA GCGGAGATAACTTGGGATTTGAGGGAAGATTGTTTCTGAACTGCATTATATACACCGTCATTCAGCCGTCAGTCAAATAG ACAAATATGCCCCCCGTCCATGTTAATATTTTACCCATGAAAACTTCTATCCTCCGTGGTTAGGCTCAAACCGTGTTTTG CAAGAGCATCAACAATCGCACCCCAAGTTCGGGAACTAGATACAACAAACGCATACACATTCCCTCAAATCAATAAAAAG AAAACTGCCCCAATTCCATTGCTTCTTCTCTTCTCCGTCCAAATTGTAAGATGCTTTTGATTCTCTTCCCTCAAATTCAA TCGAAAAAAGTGATAATTTCTTCTTCTTTTTCTTCAATTATAGGCTCAATTCTGTGTCGTTATTGATTTGTATGATTATG AAGCAGCATCATTTTCGTTATTAATCGCAATTCTTCATTTCTAGATCATTTAATTGCAGCAAATTCATATCAGAATCTCT GGTTGTAGTCTGAAATGGACACTGGTGATGATTTCACATTTTGTCAGGTAATTAATTAAGAGCAATGCTACTTTCTGGAA TCTAGACAGTGAAATTATTATCATATAGCACTTTTTTCATTTCTTTTTACAAAAAGTTAGTTTTTTTATGTTGATTTTCA TTTGGGTGATTTTCACTTTGGAAAGCATTATTCTTTTTTTCTAATTCAGTATCATGGTTGTATAGGTAAGTTCACATGTG GATGGGGATGGTTCTGAAACAAACAAGCTTGTTTCAAATATTGCTGATATTTCCATTAAAGAAGAATCCTCAAATACAAG TAGTAGTAGTAGTAGTAGTAGTAATACAAGTAACACTGGTTTATTGTGGAAGGATGGTTTGCCAAATGATTCGAACTCTA GAAAGGAGGGTACAATTGGTTCTTTGTCTTTCAGTGTAGTTAACACAGCTTCAAATCAGCCGAGTGAATTGTCTTCGAAA TTGGTACCGAGCAATGCTGAGAATTCGCCGCCTCAGGAGTCACCGGAACAGATGATTTCTGCTAAAAAGCCGATTGTCCG GACCAAAGTTCCTTTTGAAAAAGGATACAGTCAAATGGACTGGCTCAAGCTCACCCGAACACATCCTGACCTTGCAGGTT CTCATGCTGAAGTTTTAATGTCGATTGTTCTTAGCATGTCTGGTTTCACGGAAATATTATCTAGAATCATTTTTAGTCAT AAGCTATTGAGTAACATCCATTTGATTTTGTGAAATTGTGAAACCAAAGATGTTATCTATTGGCCCTTTTATTGAAACAT CTATTCTAACTAATTAGAGGTTTGTAACACCAGAATACTAGAAGGAGTTAAGTGCTAATGGTTGTCTTATTTTCTTCTTG AGCTTCTGTTTAAATGTTTCCATTGCAAATGCCAGCATGGTAGTAATTCCTTCCAATACCTAACTTTGTTTGGAAATATT TCTATGATTGATTCTAAAATTAAAATCAATTTTGGAGAGAAGTTCTGTGATTAGTTTTTTGGGTTTCATAATTGATTTTG AAAAAAAGAAGCTGATCCAAACATGCTATTTGTTGTCTATCTAAAAGCAAGCCAACCACATGTCCATCCATATATAAGAG TTTACATTAACTCCTAGTTGCTTTTATTATGTATTTGCCAAAGAAGCCACTGGCAGGAACATTTAGTTTATGGTTACCAC TTGTTTGTGTGAACTTGTTAGTTCTTTGCCTGTCATTACTCACTACTTCTATTAACATTAAGAGGTGATCAGTGATGTAT TAATCTCATATTATATTCCAGGTTTAAAAGGACAGTCTAACAGGAGACTTATTTCTAAGGATGATGTTAAAAAACACCAA ACCGAGGGCCACATGTGGACTGTATTAAAAGGCCGTGTTTACAATATATCTCCATATATGAAGTTTCACCCTGGAGGTAC AGCTATCACCTATCAGCTTATTCTGCAGGTTTATATATAACTTTTTATATTTCTTATTACTATTTTCATTAAAATTGTAT ATCCATTTCCTTTTTCCAAATAAAAATAAAAATAAAAAATCCCAGGTGTTGATATGTTAATGAAGGCAGTGGGAAAAGAT TGCACATCTCTATTCAGTATCCTTTTTGTGATTTCCTGATAAGTTTGTGAAATACTTCATTCATCTGTTTCTATTAATTT ACTGTTAACATTGGATATTTAGCTCTGGTTTTCTCCACTCATTAGTTATTATGTCAATTATTCCATGTATGGATTGCATC TGACATGAAAATGCTAGTTCACATCAATAAATGCTTTTAACATGTTTTCTTATATCTTAGCTATATATTATCTGAGGAAT TGAACTTAAGAGAAAAGTTATATAATATCAAGTTGGAGCTTGGACACTTTTCTAGAGATAAATCTACCTACTTTAGAGGT GTTTGGTGAGTGGAAACGGAGATCTTAGTTTCCCAAATGCTTGGGATCCTACATTCCTACTCATAAGATGTTTGTTTATA GAGCTGGTACATAAAAAAATTCAATGATTTATATGTCTGAGAAATCATGACCAGCAACCAGTATCCGGATCTTTGAATGT GTTGTGTTTATCATACTCAAATATGCTCTTAATATGATTTATAAGTACTTGGGAATGGAGATATATGTCATGTACTTGGG AATGTTTTGTGTTCATCTGTTTTTACTTTTTATTATTAATTTTTTTTTCTTCATGTACAAGTCATATGCTTATGATTCAA GTTGCAGCTTAGTTGCCAAGGTCATGTTCATCTGTTCCCCATAATTTATACAGTTTCTGTTCTTCAAGAACTGCTTGCTT CCTTATCCTTAATCCTGTGTTAGATAAATACCATGCATGGGTTAATGCTGAATTCTTATTGGAGAAATGCCTTGTGGGCA TCTTAGATGAAGGTCAATGAAGAAAGATCAGTTTTATTGTAATAGTGAATAATCACATGAAGCTAGCCTTGGTTCTGAGT CTGTTATACCTCTTCCTGGTCCCTCTTCTATTTACGGCCAGGGACCATTTGCCATACAGTTTATGGTTCAATACAGTTAT TTTGTCCCCCATGTTCATGTACGGACAAATTTGGGGTTTAATTAAAAATAAATACATGCAGAGGACTTCTTCCCTTAAGA CTACTAGCCCTAGCCCAATAAGTTTTTATAAGGAACAAGTTTAGCACTTTATTCAATGACGATAAGGTACAATATATTGC AATTCACAACATGTTCAAATTGCTGACATTGATAAAGAATATGAATTCATTTTTCTAGACTTGATAAGGTATTAGCTAAG AAAGGCACTGTTAACATATGCAAAAAATCATATACTGCACAAATAATTTTCTATATAACTGACTAAATTTTTAAATTTCA ACAAAGTCGTCCTGATCATCGTCTAGCCTAGTCCAAATCCGAAAAGAATAAGGTGGGATGATTAATTGCTTGAAGTATGA GCTCCATTCCTCTGTTTCTATACTCCGATACAACCTAAACCAGTTGCAGTTTTGCATAGGCAAAGTGTTTCTTTACGGTG TTTCTTATACGACTTTCTACTTCAGGGCGCTGATTTTTGAAGATGCAAGTGCTTTTTAATTTCACAAGACACATATAAGA AATTCATCAAATTAGAT
CDS sequence (LotjaGi3g1v0549100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACACTGGTGATGATTTCACATTTTGTCAGGTAAGTTCACATGTGGATGGGGATGGTTCTGAAACAAACAAGCTTGT TTCAAATATTGCTGATATTTCCATTAAAGAAGAATCCTCAAATACAAGTAGTAGTAGTAGTAGTAGTAGTAATACAAGTA ACACTGGTTTATTGTGGAAGGATGGTTTGCCAAATGATTCGAACTCTAGAAAGGAGGGTACAATTGGTTCTTTGTCTTTC AGTGTAGTTAACACAGCTTCAAATCAGCCGAGTGAATTGTCTTCGAAATTGGTACCGAGCAATGCTGAGAATTCGCCGCC TCAGGAGTCACCGGAACAGATGATTTCTGCTAAAAAGCCGATTGTCCGGACCAAAGTTCCTTTTGAAAAAGGATACAGTC AAATGGACTGGCTCAAGCTCACCCGAACACATCCTGACCTTGCAGGTTTAAAAGGACAGTCTAACAGGAGACTTATTTCT AAGGATGATGTTAAAAAACACCAAACCGAGGGCCACATGTGGACTGTATTAAAAGGCCGTGTTTACAATATATCTCCATA TATGAAGTTTCACCCTGGAGGTGTTGATATGTTAATGAAGGCAGTGGGAAAAGATTGCACATCTCTATTCAATAAATACC ATGCATGGGTTAATGCTGAATTCTTATTGGAGAAATGCCTTGTGGGCATCTTAGATGAAGGTCAATGA
Protein sequence (LotjaGi3g1v0549100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDTGDDFTFCQVSSHVDGDGSETNKLVSNIADISIKEESSNTSSSSSSSSNTSNTGLLWKDGLPNDSNSRKEGTIGSLSF SVVNTASNQPSELSSKLVPSNAENSPPQESPEQMISAKKPIVRTKVPFEKGYSQMDWLKLTRTHPDLAGLKGQSNRRLIS KDDVKKHQTEGHMWTVLKGRVYNISPYMKFHPGGVDMLMKAVGKDCTSLFNKYHAWVNAEFLLEKCLVGILDEGQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 234 | 234 | 8.3E-86 | – | |
| PANTHER | 1 | 234 | 234 | 8.3E-86 | – | |
| MobiDBLite | 36 | 72 | 37 | - | – | |
| MobiDBLite | 90 | 112 | 23 | - | – | |
| MobiDBLite | 90 | 118 | 29 | - | – | |
| Gene3D | 153 | 235 | 83 | 8.5E-26 | ||
| ProSiteProfiles | 156 | 232 | 77 | 20.624 | ||
| SUPERFAMILY | 156 | 234 | 79 | 1.31E-27 | ||
| SMART | 159 | 232 | 74 | 8.4E-23 | ||
| Pfam | 161 | 231 | 71 | 9.6E-21 | ||
| PRINTS | 181 | 191 | 11 | 3.0E-5 | ||
| ProSitePatterns | 187 | 194 | 8 | - | ||
| PRINTS | 191 | 205 | 15 | 3.0E-5 | ||
| PRINTS | 219 | 231 | 13 | 3.0E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Heme binding | Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. |
Expression pattern of LotjaGi3g1v0549100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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