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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0549100 |
| Transcript ID | LotjaGi3g1v0549100.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cytochrome b5; TAIR: AT5G09680.3 reduced lateral root formation; Swiss-Prot: sp|Q9LXD1|RLF_ARATH Cytochrome b5 domain-containing protein RLF; TrEMBL-Plants: tr|I3S1V2|I3S1V2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0549100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:96596106..96599454) extracted from Lotus japonicus Gifu genome v1.2.
GTTTAAAAAATGAGGTGTGTATATATCATTACTCATTGATAAATGCATATAGCAATAGCATGCAGCTGATAAATTAAAAC CCTGATGACAATTTACAATGCGATAGCGATAGGCAAAGTAAAAACAAAATACTTGTCAACAGCGGAGATAACTTGGGATT TGAGGGAAGATTGTTTCTGAACTGCATTATATACACCGTCATTCAGCCGTCAGTCAAATAGACAAATATGCCCCCCGTCC ATGTTAATATTTTACCCATGAAAACTTCTATCCTCCGTGGTTAGGCTCAAACCGTGTTTTGCAAGAGCATCAACAATCGC ACCCCAAGTTCGGGAACTAGATACAACAAACGCATACACATTCCCTCAAATCAATAAAAAGAAAACTGCCCCAATTCCAT TGCTTCTTCTCTTCTCCGTCCAAATTGTAAGATGCTTTTGATTCTCTTCCCTCAAATTCAATCGAAAAAAGTGATAATTT CTTCTTCTTTTTCTTCAATTATAGGCTCAATTCTGTGTCGTTATTGATTTGTATGATTATGAAGCAGCATCATTTTCGTT ATTAATCGCAATTCTTCATTTCTAGATCATTTAATTGCAGCAAATTCATATCAGAATCTCTGGTTGTAGTCTGAAATGGA CACTGGTGATGATTTCACATTTTGTCAGGTAATTAATTAAGAGCAATGCTACTTTCTGGAATCTAGACAGTGAAATTATT ATCATATAGCACTTTTTTCATTTCTTTTTACAAAAAGTTAGTTTTTTTATGTTGATTTTCATTTGGGTGATTTTCACTTT GGAAAGCATTATTCTTTTTTTCTAATTCAGTATCATGGTTGTATAGGTAAGTTCACATGTGGATGGGGATGGTTCTGAAA CAAACAAGCTTGTTTCAAATATTGCTGATATTTCCATTAAAGAAGAATCCTCAAATACAAGTAGTAGTAGTAGTAGTAGT AGTAATACAAGTAACACTGGTTTATTGTGGAAGGATGGTTTGCCAAATGATTCGAACTCTAGAAAGGAGGGTACAATTGG TTCTTTGTCTTTCAGTGTAGTTAACACAGCTTCAAATCAGCCGAGTGAATTGTCTTCGAAATTGGTACCGAGCAATGCTG AGAATTCGCCGCCTCAGGAGTCACCGGAACAGATGATTTCTGCTAAAAAGCCGATTGTCCGGACCAAAGTTCCTTTTGAA AAAGGATACAGTCAAATGGACTGGCTCAAGCTCACCCGAACACATCCTGACCTTGCAGGTTCTCATGCTGAAGTTTTAAT GTCGATTGTTCTTAGCATGTCTGGTTTCACGGAAATATTATCTAGAATCATTTTTAGTCATAAGCTATTGAGTAACATCC ATTTGATTTTGTGAAATTGTGAAACCAAAGATGTTATCTATTGGCCCTTTTATTGAAACATCTATTCTAACTAATTAGAG GTTTGTAACACCAGAATACTAGAAGGAGTTAAGTGCTAATGGTTGTCTTATTTTCTTCTTGAGCTTCTGTTTAAATGTTT CCATTGCAAATGCCAGCATGGTAGTAATTCCTTCCAATACCTAACTTTGTTTGGAAATATTTCTATGATTGATTCTAAAA TTAAAATCAATTTTGGAGAGAAGTTCTGTGATTAGTTTTTTGGGTTTCATAATTGATTTTGAAAAAAAGAAGCTGATCCA AACATGCTATTTGTTGTCTATCTAAAAGCAAGCCAACCACATGTCCATCCATATATAAGAGTTTACATTAACTCCTAGTT GCTTTTATTATGTATTTGCCAAAGAAGCCACTGGCAGGAACATTTAGTTTATGGTTACCACTTGTTTGTGTGAACTTGTT AGTTCTTTGCCTGTCATTACTCACTACTTCTATTAACATTAAGAGGTGATCAGTGATGTATTAATCTCATATTATATTCC AGGTTTAAAAGGACAGTCTAACAGGAGACTTATTTCTAAGGATGATGTTAAAAAACACCAAACCGAGGGCCACATGTGGA CTGTATTAAAAGGCCGTGTTTACAATATATCTCCATATATGAAGTTTCACCCTGGAGGTACAGCTATCACCTATCAGCTT ATTCTGCAGGTTTATATATAACTTTTTATATTTCTTATTACTATTTTCATTAAAATTGTATATCCATTTCCTTTTTCCAA ATAAAAATAAAAATAAAAAATCCCAGGTGTTGATATGTTAATGAAGGCAGTGGGAAAAGATTGCACATCTCTATTCAGTA TCCTTTTTGTGATTTCCTGATAAGTTTGTGAAATACTTCATTCATCTGTTTCTATTAATTTACTGTTAACATTGGATATT TAGCTCTGGTTTTCTCCACTCATTAGTTATTATGTCAATTATTCCATGTATGGATTGCATCTGACATGAAAATGCTAGTT CACATCAATAAATGCTTTTAACATGTTTTCTTATATCTTAGCTATATATTATCTGAGGAATTGAACTTAAGAGAAAAGTT ATATAATATCAAGTTGGAGCTTGGACACTTTTCTAGAGATAAATCTACCTACTTTAGAGGTGTTTGGTGAGTGGAAACGG AGATCTTAGTTTCCCAAATGCTTGGGATCCTACATTCCTACTCATAAGATGTTTGTTTATAGAGCTGGTACATAAAAAAA TTCAATGATTTATATGTCTGAGAAATCATGACCAGCAACCAGTATCCGGATCTTTGAATGTGTTGTGTTTATCATACTCA AATATGCTCTTAATATGATTTATAAGTACTTGGGAATGGAGATATATGTCATGTACTTGGGAATGTTTTGTGTTCATCTG TTTTTACTTTTTATTATTAATTTTTTTTTCTTCATGTACAAGTCATATGCTTATGATTCAAGTTGCAGCTTAGTTGCCAA GGTCATGTTCATCTGTTCCCCATAATTTATACAGTTTCTGTTCTTCAAGAACTGCTTGCTTCCTTATCCTTAATCCTGTG TTAGATAAATACCATGCATGGGTTAATGCTGAATTCTTATTGGAGAAATGCCTTGTGGGCATCTTAGATGAAGGTCAATG AAGAAAGATCAGTTTTATTGTAATAGTGAATAATCACATGAAGCTAGCCTTGGTTCTGAGTCTGTTATACCTCTTCCTGG TCCCTCTTCTATTTACGGCCAGGGACCATTTGCCATACAGTTTATGGTTCAATACAGTTATTTTGTCCCCCATGTTCATG TACGGACAAATTTGGGGTTTAATTAAAAATAAATACATGCAGAGGACTTCTTCCCTTAAGACTACTAGCCCTAGCCCAAT AAGTTTTTATAAGGAACAAGTTTAGCACTTTATTCAATGACGATAAGGTACAATATATTGCAATTCACA
CDS sequence (LotjaGi3g1v0549100.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACACTGGTGATGATTTCACATTTTGTCAGGTAAGTTCACATGTGGATGGGGATGGTTCTGAAACAAACAAGCTTGT TTCAAATATTGCTGATATTTCCATTAAAGAAGAATCCTCAAATACAAGTAGTAGTAGTAGTAGTAGTAGTAATACAAGTA ACACTGGTTTATTGTGGAAGGATGGTTTGCCAAATGATTCGAACTCTAGAAAGGAGGGTACAATTGGTTCTTTGTCTTTC AGTGTAGTTAACACAGCTTCAAATCAGCCGAGTGAATTGTCTTCGAAATTGGTACCGAGCAATGCTGAGAATTCGCCGCC TCAGGAGTCACCGGAACAGATGATTTCTGCTAAAAAGCCGATTGTCCGGACCAAAGTTCCTTTTGAAAAAGGATACAGTC AAATGGACTGGCTCAAGCTCACCCGAACACATCCTGACCTTGCAGGTTTAAAAGGACAGTCTAACAGGAGACTTATTTCT AAGGATGATGTTAAAAAACACCAAACCGAGGGCCACATGTGGACTGTATTAAAAGGCCGTGTTTACAATATATCTCCATA TATGAAGTTTCACCCTGGAGGTACAGCTATCACCTATCAGCTTATTCTGCAGGTGTTGATATGTTAA
Protein sequence (LotjaGi3g1v0549100.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDTGDDFTFCQVSSHVDGDGSETNKLVSNIADISIKEESSNTSSSSSSSSNTSNTGLLWKDGLPNDSNSRKEGTIGSLSF SVVNTASNQPSELSSKLVPSNAENSPPQESPEQMISAKKPIVRTKVPFEKGYSQMDWLKLTRTHPDLAGLKGQSNRRLIS KDDVKKHQTEGHMWTVLKGRVYNISPYMKFHPGGTAITYQLILQVLIC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 197 | 197 | 2.1E-67 | – | |
| PANTHER | 1 | 197 | 197 | 2.1E-67 | – | |
| MobiDBLite | 36 | 72 | 37 | - | – | |
| MobiDBLite | 90 | 112 | 23 | - | – | |
| MobiDBLite | 90 | 117 | 28 | - | – | |
| Gene3D | 153 | 205 | 53 | 1.4E-11 | ||
| SUPERFAMILY | 156 | 196 | 41 | 3.93E-13 | ||
| ProSiteProfiles | 156 | 204 | 49 | 14.287 | ||
| Pfam | 161 | 196 | 36 | 6.9E-10 | ||
| ProSitePatterns | 187 | 194 | 8 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Heme binding | Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. |
Expression pattern of LotjaGi3g1v0549100.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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