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LotjaGi3g1v0552400.2

Overview

Field Value
Gene ID LotjaGi3g1v0552400
Transcript ID LotjaGi3g1v0552400.2
Related isoforms 4
Lotus japonicus genome version Gifu v1.2
Description Alpha/beta hydrolase, putative; TAIR: AT4G25290.1 DNA photolyase; Swiss-Prot: sp|Q9FFZ1|PPH_ARATH Pheophytinase, chloroplastic; TrEMBL-Plants: tr|K7LFK6|K7LFK6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0552400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:96986454..96991297) extracted from Lotus japonicus Gifu genome v1.2.

AATTTTCCTTCCCTAATGGCTCTCCTCAGTCTCCCGCAATTTCCCTCCCATTTTCCCTCACTTTCCTCCTTTCCAAACAC CCGCATCTCTCCAACTCGCTGCCGTTGCTCAACCGCCACCGCCATTCTCTGGTTCAAGCACGATCTCCGAACCGATGACC ACCCTGGACTCCTCGCCGCCGCCTCCAACTTTCCATCTCTCGTCCCTCTCTACGTCTTCGACCACCGTATTCTCTCACGT TAGTGCGCCCAAAACTCAACTCAACTCTCTGCGATGTGAAATCGAATCTCATCACGGTGTGGCTCTTGTTTTGCAGGTTT TTCCGATGAAACGCTGGAACTGGTTCTCTTCGCAGTTCACGATTTGAGGAAGTCGTTGCAGGATCGTGGTTCTGACCTAA TGGTTAGATTCGGCAATGCTGAGAATGTGATTCAGCAACTTGCAATGGAGGTAGTTAGTTATTTTTTTCAGTTAGTTAAT TTGCAGTTAGTTTCATCGGAATTCAATTTTCTTAGATAAATTCAATTCATCGCTCAGGATGGAACAGGTTAAGGCTACCT GTGTGTTTGCGGAACAAGAGGTAGAGTATGAACTGCGCTTCCTCATCGATGTTGTGAGCCAGCATTTGAAATCGGTCTCG GTTCCAGAAGGTTCTCCAGTGATTGAATTGTGGAACACTCCGTTTTATGATGTAAAGGCAGGTAGCTCATTTGTGTTTGC TGTGTTCATTGGCTTGGTTGGTTGAGTTGATCATGTGAAATGTGGAAATTATGTCGATGTGGTGATTGTTTTGATTAATT TTGTCATGTTTGATAATTGTATTGATTTCACTGTCACTAGGTTCTGCAAGATCTTCCTGCATCCTATGATGACTTTAAGA AACTTCGACTCCCAGTAACTGAACCGATTCAGCTGTCAAAATTACCTGGTGCAGAAATGGAACTCGACTGGGGTGAGTTC TGTGGTGGATGACTTTTCTTATCAGAATTCTTATTATTCTTCTTCTTTAATTTCCTGCATTTTATGATTTTGCTGAAAGT CATGTGATAATTGTTTATTGAATCAGGTGCTCTTCCTGTATATGATGATATAAAGGAATTAATGAATAAAAACTCGTGGA AATCAGGAGAGAATTGGAAATTAATCAAGGAGACATCAGCTGAAACGTTATTACGCAGAGATATATTGAAATCGAGTGAG AGCAGTGAAAGAAGTTATAGCTTTAGACAGATACAGTCTAGGGAACCAAATGAATCTGTTTTTGTGACACGAAAAGGAAA TGTTGTGGGAGGAGGAACAAATAATGCACTGAATGCATTGGCTGCATATTTGAGATATTTAGAGGGAACAGCTCGTAATG ACTGGCAAGAGTATGTAGTGACAACCCATTTTTTATCCTTGGATTTTGTTTTTTTATGTTATTTTAGTAAATGTAAATAT TGTAAGCAGTCTGGAGGCCAAAAGTAGTAATAGCTGGTTTTTCATTATTATCTTCATTTAAAGGAAAACTGTTTTCATTA TAAAAAAAATCATCAGATTTCACTTTGTTTTCTGTTTCTGGTTTGTAAAAGTCTTGTATTACATTCTGTTCTTCTGTATC ATTAGAAGGGCAGATGCACCTTGCCTTTGTTTACCTCAAAAGCTGCAATGTTTGTGATCTACTTTCTAGTCTCCTCCTCC TAAGTGGTTAATTTGTTTGACATGACAATTTTCTTTTCTGTTCTTTACGATACACAATTAACCTTTCTTTATTTGCTAAG CTGCTAAAAGGTTTCAACTGAAGTCATCATGTTAAAACAAATTTTACATGCCATGAAATGCTCCTTTGTCTTAAAATTCG TTCAGGGTACATGAAAAAGTCCGTTCTTATGAAAGTCGGAATGGAGCATCATTTATTGGACTCTTTGGTCCTGCCTTATC TCTTGGCATTATATCAAGAAGAAGAGTATATTATGAAGCTATCAAATATGAGAAAGAACGGAATGCAGGATTCTTATCTC CCTTTGGATATTCAGCTGTCACAATCGCAGCAGCAATTGATGCTGTGTGCTCAAAGGAGGTGCTAGTTATAACAGTTATG CTGTGTTAGAGTACAAATTGTCATGTGCCTTATTGATTTGGTTATGTCTTATCAGTTAGAGTACTTGCCTTTACCATTTT CTTTTCTTTTCTCTTTTTAATCAATTGATTGATTTATCTATTTATTTTGGTGTCATAGTGGTATTGGCTTATGGCATTGA GAAATCATTTAAAGAATGATGGGATACACTCAACACGTATATGGAGATGGAATGGATTTCTTGTTCAGGTATCAATTGAA TGGGCTTTCGGTTAATGTTTGATTTCCAATTATATCCCCTTTAAAAGAGCCCTTTCTCAATGAAATGAGTTAAAAACCTG AAATACCTTATACAACAGCAGGTTTTTATAAAATCTACTGCTAAATTTTGTTTGAAACGCTTTTCTCAGTATACACTTGC TGGTGAAGATGGTCCTGCAGTTCTTCTTGTACATGGTTTTGGTGCCTTCGGGGAGCATTACCGAGATAACATACATGCTT TAGCTGGAGCTGGGAATCGAGTATGGACTATTACATTGTTAGGATTTGGCGAATCAGAAAAGCCAAATATTGTATATACT GAACTATTGTGGGCTGAACTATTAAGAGATTTTATTGTTGATGTTGTGGGTGAACCGGTCCATCTTGTTGGCAACTCAAT TGGTGGTATGTGTTAACCATAAATTGGGTACCTTGCCCCAATATTTCTGCCTCCTTTTAACACGCATGCAAAGTAACTTT GCTATATGTAAAAAAAATTCATTTGCTTATTCATTTGATTAGTTCATCATTTAATAATTACTTTTTTCATACTCCAGGTT ATTTTGTTGCTATTGTTGCTCGCATTTGGAGTGTTTTGATCAAATCAGCTGTCTTGATCAACAGTGCTGGCAATATCATC CCCACATATACATCCATACCATTGCCCAGAGTAAGTGTAAGTGAGAACAATGGAAGTTATGTTACACATGCGAGACACAA TATGCTTTTTTTTCGATTGGCACTGTCTGATAGACTTACAATTTGATTCTTGCCGGTGTTAAGTTTTGCCATGTTTTATG TGAGGCAATCTACTTATTAGAAACTTAACATGTGTCTATGATGATAGTTCTATCCCTAAAATACCTAAGTCCAGGTTTAC AAAGGTATATACTAGGAAGCATAAGAGAAGTGAGCCTTAGAAGGTTACTTCTAATATAGCTGCTTAGCTGTTATGCTGAT GTCAGCAATACAATTCTGTTAGACAGCTAGCAATTAGTATAAATAGGGATTTGGTCATTCAGTTGAGGCAGTTATCGATT GGGTAGTGGTTTGGGAGATTCTGGATCTCGAATTCCAGTGGTTAGGGTTCTTGTTAGTGTTCTTGATTCTTCTGTGTAAT TCCTGAGAATTCAACCTCAGTTCTTGAGGATTGAGTCTCTGTTTTCTTCAATAAACCAGTAGCATTTCTGTGAGTTCATC AGTCTATCATATACCCCCTCCATCATCTACCTATATTACATATGTTTATCCATTACACAATAGAAATTTAAAATCTCAGT CTTCACAAAAAATGCATCCATGAGACCTTTGTGTTTTTCTTGAATGAAGGGAAGCATCCAAAAGTGTGTAATGGAACTTA AAGTTGGGATTTAGTAATTTAGTAAATACCTACAAACATTTCTCACTATAATTTTATATTGTTTATAGCTTCAGTATGAG TACAACATAATTAGAATATCTATCTAAATTTTGCTTTTCTGTTTACATATAAAAATTCAGGACAGACAAACATCAGGGGC TTCCTGGTTGGGTTCTCGAATTCTTCTATTCTACTTGAGGCTAAGAATTCAAGAAATAGTTAAGAAATGCTACCCAACTG TGAGTGTAGTTTTTGCCACTAGCTTCCAAATCTTATGTTTTTGTTTTCCGTTGATGGTTGTTGATACTGTGGCATTTTAC TTTTGCAGAAGGTTGAAAGAGCAGATCATTGGCTCATAAATGAAATGCTAAGAGCAGTATCCTCTACTTCTATAGTATTT TTTCCCGCATTTGATATATCCATAAATAATTCCTATTGAAATCTCCTTTACATAATAAAAGTCATATGATCCTGGTGTAG ATGTGGTCTTGGAAAGCATCTTTAGCTTTAACCTTTCCATACCTCTTAACTATCTTCTTGAAGATGTCAAGGAAAAGGTT CTAATTATACAGGTATTCTAACATGGGTGTGAAATACTGTTGAAAAAAAATGATAATTAATCTGGCGTAGCCTTATATGT TATTGATTTCGTTATTGTCAGGGGATGAAAGATCCACTTTCTGACTCCAATGCCAGGGTGGCCATGCTTAAAGAGCATTG TCATGGTGTTTCAATTAAGGAATTAGATGCTGGTAACTACAGTTTTTATATTTATTAAGTTGCCATTAGTTTTGTTTGTA CTTCTTAATAGGGACCTTTTCTCCCTTGACATTACAGGCCATTGTCCGCATGATGAGGTGCCGGAGCGAGTGAATATTAT CATTCATGATTGGATACTTGGTGTTGAAAGTAACACTTTGGCAGGGTGTCTAGTTTAATTTTTTTTTTTTTTGGTATCTA GCAACTGTGCATAATAAATCTTCCAATATGGTAAATTGTCCAGCGCTTATTAATACACCAGTGCAAACAAGAGATTGCAC CTGTGCATATTGTGCTATAAACTTGTAGAACTAGTATCCGAACCCGTGCGTCGCACGGATGAAATAATATGGAAAAAGAA ATAAAAATGAAGTTAAGAGCAATAAATAATGTTTTTATATGGTC
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0552400.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTCTCCTCAGTCTCCCGCAATTTCCCTCCCATTTTCCCTCACTTTCCTCCTTTCCAAACACCCGCATCTCTCCAAC TCGCTGCCGTTGCTCAACCGCCACCGCCATTCTCTGGTTCAAGCACGATCTCCGAACCGATGACCACCCTGGACTCCTCG CCGCCGCCTCCAACTTTCCATCTCTCGTCCCTCTCTACGTCTTCGACCACCGTATTCTCTCACGTTTTTCCGATGAAACG CTGGAACTGGTTCTCTTCGCAGTTCACGATTTGAGGAAGTCGTTGCAGGATCGTGGTTCTGACCTAATGGTTAGATTCGG CAATGCTGAGAATGTGATTCAGCAACTTGCAATGGAGGTTAAGGCTACCTGTGTGTTTGCGGAACAAGAGGTAGAGTATG AACTGCGCTTCCTCATCGATGTTGTGAGCCAGCATTTGAAATCGGTCTCGGTTCCAGAAGGTTCTCCAGTGATTGAATTG TGGAACACTCCGTTTTATGATGTAAAGGTTCTGCAAGATCTTCCTGCATCCTATGATGACTTTAAGAAACTTCGACTCCC AGTAACTGAACCGATTCAGCTGTCAAAATTACCTGGTGCAGAAATGGAACTCGACTGGGGTGCTCTTCCTGTATATGATG ATATAAAGGAATTAATGAATAAAAACTCGTGGAAATCAGGAGAGAATTGGAAATTAATCAAGGAGACATCAGCTGAAACG TTATTACGCAGAGATATATTGAAATCGAGTGAGAGCAGTGAAAGAAGTTATAGCTTTAGACAGATACAGTCTAGGGAACC AAATGAATCTGTTTTTGTGACACGAAAAGGAAATGTTGTGGGAGGAGGAACAAATAATGCACTGAATGCATTGGCTGCAT ATTTGAGATATTTAGAGGGAACAGCTCGTAATGACTGGCAAGAGGTACATGAAAAAGTCCGTTCTTATGAAAGTCGGAAT GGAGCATCATTTATTGGACTCTTTGGTCCTGCCTTATCTCTTGGCATTATATCAAGAAGAAGAGTATATTATGAAGCTAT CAAATATGAGAAAGAACGGAATGCAGGATTCTTATCTCCCTTTGGATATTCAGCTGTCACAATCGCAGCAGCAATTGATG CTGTGTGCTCAAAGGAGTGGTATTGGCTTATGGCATTGAGAAATCATTTAAAGAATGATGGGATACACTCAACACGTATA TGGAGATGGAATGGATTTCTTGTTCAGTATACACTTGCTGGTGAAGATGGTCCTGCAGTTCTTCTTGTACATGGTTTTGG TGCCTTCGGGGAGCATTACCGAGATAACATACATGCTTTAGCTGGAGCTGGGAATCGAGTATGGACTATTACATTGTTAG GATTTGGCGAATCAGAAAAGCCAAATATTGTATATACTGAACTATTGTGGGCTGAACTATTAAGAGATTTTATTGTTGAT GTTGTGGGTGAACCGGTCCATCTTGTTGGCAACTCAATTGGTGGTTATTTTGTTGCTATTGTTGCTCGCATTTGGAGTGT TTTGATCAAATCAGCTGTCTTGATCAACAGTGCTGGCAATATCATCCCCACATATACATCCATACCATTGCCCAGAGACA GACAAACATCAGGGGCTTCCTGGTTGGGTTCTCGAATTCTTCTATTCTACTTGAGGCTAAGAATTCAAGAAATAGTTAAG AAATGCTACCCAACTAAGGTTGAAAGAGCAGATCATTGGCTCATAAATGAAATGCTAAGAGCATCATATGATCCTGGTGT AGATGTGGTCTTGGAAAGCATCTTTAGCTTTAACCTTTCCATACCTCTTAACTATCTTCTTGAAGATGTCAAGGAAAAGG TTCTAATTATACAGGGGATGAAAGATCCACTTTCTGACTCCAATGCCAGGGTGGCCATGCTTAAAGAGCATTGTCATGGT GTTTCAATTAAGGAATTAGATGCTGGCCATTGTCCGCATGATGAGGTGCCGGAGCGAGTGAATATTATCATTCATGATTG GATACTTGGTGTTGAAAGTAACACTTTGGCAGGGTGTCTAGTTTAA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0552400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MALLSLPQFPSHFPSLSSFPNTRISPTRCRCSTATAILWFKHDLRTDDHPGLLAAASNFPSLVPLYVFDHRILSRFSDET LELVLFAVHDLRKSLQDRGSDLMVRFGNAENVIQQLAMEVKATCVFAEQEVEYELRFLIDVVSQHLKSVSVPEGSPVIEL WNTPFYDVKVLQDLPASYDDFKKLRLPVTEPIQLSKLPGAEMELDWGALPVYDDIKELMNKNSWKSGENWKLIKETSAET LLRRDILKSSESSERSYSFRQIQSREPNESVFVTRKGNVVGGGTNNALNALAAYLRYLEGTARNDWQEVHEKVRSYESRN GASFIGLFGPALSLGIISRRRVYYEAIKYEKERNAGFLSPFGYSAVTIAAAIDAVCSKEWYWLMALRNHLKNDGIHSTRI WRWNGFLVQYTLAGEDGPAVLLVHGFGAFGEHYRDNIHALAGAGNRVWTITLLGFGESEKPNIVYTELLWAELLRDFIVD VVGEPVHLVGNSIGGYFVAIVARIWSVLIKSAVLINSAGNIIPTYTSIPLPRDRQTSGASWLGSRILLFYLRLRIQEIVK KCYPTKVERADHWLINEMLRASYDPGVDVVLESIFSFNLSIPLNYLLEDVKEKVLIIQGMKDPLSDSNARVAMLKEHCHG VSIKELDAGHCPHDEVPERVNIIIHDWILGVESNTLAGCLV
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.40.50.620
17 161 145 8.3E-29
IPR014729
PANTHER
PTHR47832
27 675 649 0.0 –
ProSiteProfiles
PS51645
34 165 132 28.265
IPR006050
SUPERFAMILY
SSF52425
35 211 177 2.22E-28
IPR036155
Pfam
PF00875
36 167 132 1.4E-22
IPR006050
Gene3D
G3DSA:3.40.50.1820
388 668 281 7.2E-38
IPR029058
SUPERFAMILY
SSF53474
397 668 272 1.37E-40
IPR029058
Pfam
PF12697
420 660 241 4.0E-18
IPR000073

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0552400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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