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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0554700 |
| Transcript ID | LotjaGi3g1v0554700.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Chloride conductance regulatory protein ICln protein; TAIR: AT5G62290.2 nucleotide-sensitive chloride conductance regulator (ICln) family protein; Swiss-Prot: sp|Q9LVA7|ICLN_ARATH Chloride conductance regulatory protein ICln; TrEMBL-Plants: tr|I3T898|I3T898_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0554700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:97240348..97246727) extracted from Lotus japonicus Gifu genome v1.2.
CCTAGTGTATTTGATGACCACCCTTCAAAAAACGTTCTTTTCTTTGTTGTTAAGGTGATTGATTATCTTGGACTTGCATT TCTTGTGGACTTGGTTTTGGTACATGATTGCCTTGCTGTTGAGGAATGTGCATGGATTCTTTCATTTCAAATTGAAGTTG CATGTATAAAAAGATGAGGAAGTATATTGTTTCCTCTGCATCATAACAAAAACTGAACATGAAAATGTTTACTTGGGAGA TTGTGGATCATACGATCCTTAAAAAACTTCTTGTAGTTTTGCTTTGTGCATTTTTGTTTTGGAAGATCATTAGATACATG TGTGGTCTTCTCAAAGTAGAGAAGGAACCGGTCACAGTATTGGTCACCGGTGCTGCAGGCATGAAATGTTCATTGAGTTC TTGTTTTAGCTTTGGCTAACCAAATGAAATGTTCATCATGTTTTATTTTACCATTCATTTGTTTTTTATCCATATTAAAT TTCAAGAAATAAGAATTTGACTAATATCTCATTACATAATTGAAATTTTCGTGTATTATACTTTGGTTGAAGAATTACAT TTTCCAATTTCATCGGCATGCCTCATTAAATTTAGATTTGATTCAAAAACAGGGCAAATTGGTTATGCTCTCGTTCCAAT GATTGCAAGAGGAATGATGTTAGGCCCAAATCAGCCTGTAATTCTGCATATGCTTGATATTGAGCCAGCAGCAGAGGCCC TTAAAGGGGTAAAGATGGAACTAACTGATGCTGCTTTCCCACTTCTTAAAGGCATGTTTTTAAACTAATGTTGACATGAG TATAACTATTATATCACGTGCATGTTTAGAAATCGTTCTAAGATTGATTCTAGAGCCAGGATTAATTTTGAGGAAAAGCT TCTAACGAGTAGTTTATGAGAGCCATAATTGATTCTAGTGAAACAGAAGCTGATCCAAACATGCTTTTTTGTTGTTGAGA TCTCATATTTCATTTGCGCATATAAATGCAATAGGTGTTGTTGCTACTACTGATGTTGTTGAAGCTTGCAAAGATGTCAA CATTGCCATTATGGTGGGTGGATTCCCACGGAAGGAAGGAATGGAAAGAAAAGATGTGATGTCTAAGAATGTTTCAATTT ACAAGGCTCAAGCTTCAGCCTTGGAGGAGCATGCTGCTGCAGATTGTAAAGTTAGAAACTACTAATCTAATTTTAATGTT GAATAAGACATAGCATCATGAATATGATTCACTATGCTACTTATATAGTCCTCTATCACCTAATTGCTCCTCTTATATTA TTGAATTCCATTAATTTCTTGCTGAATGCAGGTGCTAGTGGTTGCCAATCCAGCAAACACTAATGCTCTCATTCTGAAAG AATTTGCTCCTTCAATCCCAGCGAAAAATATCACATGTCTCACTAGACTTGATCACAATAGAGCATTAGGCCAAATCTCA GAGAGGATAAATGTTCATGTCAGTGATGTAAAAAATGTCATCATTTGGGGCAATCATTCTTCAACTCAATATCCTGATGT CAACCATGCAACTATCACCACAAGTGGAGGGATGAAGCCTGTCAGAGATTTAATTGCTGATCACAATTGGTACCTCAATT TCAAACCCTAGTCATTGATTATTCAAATGTTCATCACCTCCAAATTCTCTCCCAATTAATCATTGATGATTTTGATTAAT TTATATGTTGACTTTTAGTCCCTTACTTCATTTTTTCCTGGTTCTGTCCCTTACAATGTTTGTTATATAATGTAACTATT CTAAGCATACGTAACTTGCTTTGTTAGGAAAGTAATCTAATTTCTTTTTCCATTTATCCAAGGCTAAACACTGAGTTCAT CACCACTGTTCAGCAACGTGGGGCTGCAATTATCAAAGCTAGGAAGTTATCTAGTGCATTATCAGCAGCAAGTGCTGCTT GTGATCATATACGTGATTGGGTTCTAGGTACTCCTAAGGTTGGTTCTTTCTTTGTTCCTGTAGAATTTCATTATTTGAAA GGTGTTGCCTTCTCATAATTTGTGCTACCACTTTATATTTGTTTACCTTTTGTTGCATATGCATCTACTTCAGGGAACGT GGGTTTCAATGGGAGTGTGTTCTGATGGATCTTATGGCATACAACCTGGTCTCATTTACTCTTTTCCGGTTACATGTGAG AAAGGGGAATGGAACATTGTGCAAGGTACATTGTTTTGTCTTATATAACTATGTAGGATTTGAATTTCTTTCTGCCTTTT TTTAATTAGCAAATGATTTTTGACTGACTCTTTATTATGTTTGCCATGATAAAGTAATTAGCAACCACAAGAAAATTATG CTTATTATCATTTGTTTCTATGTTTCCAATATGATTTTGAAATATAACTTTTTTTATTTTAATGTGAACAAAAAATGAAC TTTTTATCAACGCCATGGTTTATTTGATAATAATTCCTTTTTTTTGGTCAACATAATAATATCTTTGAAATATTGGCAGG GCTCAAGATAGACCAGTTCTCTAGGGACAAGATGGATAAAACGGCCCAAGAGCTCATTGAGGAGAAAACATTGGCTAAAT CATGTCTCAATTGATGACCACCCATGTTTACTTAGCAATTGTGGCTATTGAAAATAAAAAGGGACACTTTCCTCAATAAT AGTTGGTTTTTTTAATGCATGCTTACACGAGAATATGGCCTTTCAAATGGAATAAAATGTGGAAGTTCCCTTCTTGTTAT ATTTATAGCTATTCAAAAGAAATGATATCACACTCTGCGAGCATTTTAGTGCAAGGTTTGATTTCAATCTCATGTCTAAA TGAGTCATGGTAAAGTTTGGGTTAAATAACCAATCATCCAATCACATTTGAGATAAGTGAGTTGCAATTTCTATATTTTA TTTATTAATTTATTTCCAACTCATTTATCACCAATGTGATTGGATGATGAGTTATTTAACTCAAACTTTATCATGACTCA TTTAGACAACCCCTTTCAAAATAAATTTATTAAGCATACGTACTTAAGGAGTGATCGTGAATTGCTTGAGTTTGTGATCA ACCTTCACTAAGTTCATAAGAGACCGTAAAAAAGCCACAATCCTTCATGAGAAGCAAACATGAAATCTCAAACACAATGC AAATAAAAAATGGCTTCACAAGACTTTGTTTGCATCATGAACCCAACCTTTAGGCCAATGATTTACAAAGCACAATTTCA AAATCACAAGTTTATTAAAAATCCTAACGCAATCTCTTATCCAATAGTATCAATGTGCCTCAAAAGTTTTAGCCCCGCTA AGGGTGCTCTTGCTCAGGGAAGGCTTTCCTACCAAGTCTAGGTGGGTTTTTCTCTCTTTCTAATAAGGGTTCTTCCATCT TCTAAGTAGGAGATCCCATTCTCCCTCCCCATCCCCTTCTTCAATGCAGACTCTACTTTTTTCATGGGCAACTATCTCCC TTTCTCCACCATCTTCCTTATTTGCCCTTTTCTATATTTTATGTCCTTTAATTTGTATATCCCCCTCTACCATTTATTTG ATCAACATTTCCCCATGGTATCGTCCCCTTATCCTTCTCTTGGTTTGATGCTCTAGCAAACGTTAATGTGACTTCTATAA ATGCAAACGAGCAGTTTGTTCCATCATTTTCATCCCTTGCAACAACTTCGACAAAACTAGTTGAGCCTAGAATGAGAGCA AAGAAGAAAATGGGGATTAAGGTTTTTGAAATGAGGATTAAAAGATTTTATAATTTTGCTTTTAAATTGATACTTTTAAT TTAACTTACTTATTAATTATACACGTGTAAATTAAATTTTAATAATGTAACCAAAAATTAACTTTTAATAAAAAATTACA CTCAAATGCCACTAATACTGGGCAAAGCTTTTTTTTGAACTTCTGGGCAAAGCTGCTAGAACTCTTGAGACAATAAGTAA AACTATATTATTTTACTTATGGTTGGGATTGAAATGTAACTTTGGTCAAGTGATTTAAGAACAAACTTAACTCTGGGTAA TAAAACCCAACTCAGTTTTTTTGGTACATCAGAAAGACAAAACCCAACTCATTTTAAATGGCCTAAAACTTATTTAAGTC AAAAAAAAAAATAAATACTCCAAAAAAGAACCTTAAAATAAAAAGAGGGGTGCATTTAGGGGTGGTGGTGGAGCGGAGAT TGAATTTGAAGTTGGAGTTTGCAAAACCCTAGACAGAAGAGAAGAGAAGAGGCGATTCGAAATGGTTTACGGGGTGAGAG AAATTAACGTGAGCCGCAGCGGCAGCGGCAGCGGCAGCGGAGGAGAGCCTGTGAATTTGATTGATACTGAAAATGGTGAA TCGTTGATGCGTGTGCAACCCGGTGTCGACTTAGTCCTTTCCAATCTTCCTCCACACTCCCCCGGCAGCGGCACTCTCTA TGTCACTACCAAGCAAGTCATCTGGGTCAGTGATCTCGACCAAACTAAAGGATTTGCGGTTGATTTTCTCTCTATTTCAC TCCATGCTGTCTCCAGAGACCCTGATGCCTACCCTCTTCCATGTCTATATACCCAGGTTAGTACTACTACTACTAGTACT ACCTTTTATTATATTCTCATTCTGATTACTCCTCCTGTTTCTGTTTTCCTCCAGATTGAAACTGAAGACGATCTTCATTC CAACGACTCTGATTCTGAATCAAATAATCATGCCTTGGATTTATCCACGGTCAGAGAGATGAGGCTCATTCCATCTGATC CCACTCAATGTATATCTTATCTTCATTCTTTATGTTTTCCCCAATTCACATTCTAGTACCATTTCATTCATTTAAGTGTT GTTGCTTTTCCAGTGGATTCTCTGTTTCAAACATTCTGCGACTGTGCTGAGCTTAATCCTGAACCTAATGCTGCTGCTGC TGCTGCTGGTCAGTATTGTTTTTCCACACACCCTACCCTCTTTTTTTATTTTCATCTTTCTCCGTTGTTTACCTTTAGAG GATATCTTGTTTTTTAGAGGAGGAAGGTCAACAACATAATTGGATCTTCAGCGCTGATCAGATGGAAGATGATGAACAAC CTGGTATATGTGGATGCCTGTTAGCTTTTACCTTCTTTCCTATTAGTCGCTGTATTGTTGTTTAACCTCTACTTTTTCTT TCAGAGGAGGAAGGCTATATTGCTCCCAACCTTGCCAACTCTCTTGGTCATTCAAATGGAGATCATGACCTTGCTCGTAC TGTGCTTGAGGTATGCTGTTCTTCCTTTAACTATAAATCTGTATGGCATAGGGAGTGCTTACAAGGAGGATGCTTGTCAC AATTGCCAATTTCATCAACCTCAAGTTTCTCTAGTTATTATCTTGCAAATATATAGAGCGAATGAAGTTGAAGCAAATTC TATACTTGTACTTCATATGTTCTTGGTTATCTACTTACTATGCTTGTGGATATTTACCATGTTTGTGCCGCCAATGCACA ATATCCCAAATCTTAACAATTCTTGTGACTAGTGATTTTTGAATGAATTCATGCCTGGAATTTAAATTGTTTTGTGCTTG CTTATCTTGGATGTACCTTTGAAATTGGGGTGTCTGAAGATTGGTTCTAGATCAGCAATTTATCACCTTTATGGCTTATA TTGAAAATCTGTGAATTGATGGGAAACTCATGTTTCATTACTGAGTTTGCATAATTTGTTTTCTCTGTACTCCCTTTATT TATATTCAGTTGAATTTGTTGCAGCTTCAAATCAATGATCAACGATTTGAGGATGCAGAGGAGGTTGAGCATGATGGAGA TGGTACCCATCATTGAGTACCGGTGTTTTTCTCAAATCAGCATATTCTAGTGTTGTGCAAAAGTTTTATCAACTGTGTTT TATGTAGTTTGGTTCTGTATATGTAAACTATTATGGAACATCTGACTAGAGTCATAGTGGTGAAGTTTTGATGTGTCTTT ATGTGGAAGAAAATCATCGTATCTGGGATTTGCAAATGAGTAACACCTTGTAGCAGATTTCTGATCAAACTAGGGACATT CATTTCATAGGCTTAACATTGTTTGGATAATTTATCGAAAATTGGTTTTCAAGGAAGCATTTGCAAGTAATTAGCTTAAC AGTGTTGAATGTAAATTAAGAAATATGACAAAAAAATTATTTGACAAATGACAATGAGTTTGCTTGGGTGAAATTTTCAC AAGGTATAATGTAATGCCCTGTGTCACAATGCAAGAGAGTATTTTTTTTTCCTTTTAAGAAAAAATATAGCATGTGTGGT CTACAATTATCCGTACATCCCCATGAAGTATGTATGGATAATTTAGGGCTTGTTTGATTCTCTTTTTATTTTTCTGAATT CTAAAACTATTTTTAAAAATAACTTTTAAAACGTGTTTTTCTTTAAATTTAAAACAGGAA
CDS sequence (LotjaGi3g1v0554700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTTACGGGGTGAGAGAAATTAACGTGAGCCGCAGCGGCAGCGGCAGCGGCAGCGGAGGAGAGCCTGTGAATTTGAT TGATACTGAAAATGGTGAATCGTTGATGCGTGTGCAACCCGGTGTCGACTTAGTCCTTTCCAATCTTCCTCCACACTCCC CCGGCAGCGGCACTCTCTATGTCACTACCAAGCAAGTCATCTGGGTCAGTGATCTCGACCAAACTAAAGGATTTGCGGTT GATTTTCTCTCTATTTCACTCCATGCTGTCTCCAGAGACCCTGATGCCTACCCTCTTCCATGTCTATATACCCAGATTGA AACTGAAGACGATCTTCATTCCAACGACTCTGATTCTGAATCAAATAATCATGCCTTGGATTTATCCACGGTCAGAGAGA TGAGGCTCATTCCATCTGATCCCACTCAATTGGATTCTCTGTTTCAAACATTCTGCGACTGTGCTGAGCTTAATCCTGAA CCTAATGCTGCTGCTGCTGCTGCTGAGGAGGAAGGTCAACAACATAATTGGATCTTCAGCGCTGATCAGATGGAAGATGA TGAACAACCTGAGGAGGAAGGCTATATTGCTCCCAACCTTGCCAACTCTCTTGGTCATTCAAATGGAGATCATGACCTTG CTCGTACTGTGCTTGAGCTTCAAATCAATGATCAACGATTTGAGGATGCAGAGGAGGTTGAGCATGATGGAGATGGTACC CATCATTGA
Protein sequence (LotjaGi3g1v0554700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVYGVREINVSRSGSGSGSGGEPVNLIDTENGESLMRVQPGVDLVLSNLPPHSPGSGTLYVTTKQVIWVSDLDQTKGFAV DFLSISLHAVSRDPDAYPLPCLYTQIETEDDLHSNDSDSESNNHALDLSTVREMRLIPSDPTQLDSLFQTFCDCAELNPE PNAAAAAAEEEGQQHNWIFSADQMEDDEQPEEEGYIAPNLANSLGHSNGDHDLARTVLELQINDQRFEDAEEVEHDGDGT HH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 27 | 235 | 209 | 9.7E-65 | ||
| SUPERFAMILY | 29 | 85 | 57 | 4.51E-6 | – | |
| Gene3D | 39 | 157 | 119 | 1.7E-32 | – | |
| PRINTS | 54 | 69 | 16 | 1.5E-8 | ||
| Pfam | 57 | 188 | 132 | 6.2E-25 | ||
| PRINTS | 77 | 91 | 15 | 1.5E-8 | ||
| PRINTS | 129 | 141 | 13 | 1.5E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Spliceosomal snRNP assembly | The aggregation, arrangement and bonding together of one or more snRNA and multiple protein components to form a ribonucleoprotein complex that is involved in formation of the spliceosome. | ||
| Cellular component | Cytosol | The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. | ||
| Cellular component | Plasma membrane | The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. | ||
| Biological process | Chloride transport | The directed movement of chloride into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Biological process | Cell volume homeostasis | Any process involved in maintaining the steady state of a cell's volume. The cell's volume refers to the three-dimensional space occupied by a cell. | ||
| Cellular component | Methylosome | A large (20 S) protein complex that possesses protein arginine methyltransferase activity and modifies specific arginines to dimethylarginines in the arginine- and glycine-rich domains of several spliceosomal Sm proteins, thereby targeting these proteins to the survival of motor neurons (SMN) complex for assembly into small nuclear ribonucleoprotein (snRNP) core particles. Proteins found in the methylosome include the methyltransferase JBP1 (PRMT5), pICln (CLNS1A), MEP50 (WDR77), and unmethylated forms of SM proteins that have RG domains. | ||
| Cellular component | PICln-Sm protein complex | A protein complex that contains pICln (CLNS1A) and several Sm proteins, including SmD1, SmD2, SmE, SmF, and SmG. |
Expression pattern of LotjaGi3g1v0554700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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