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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0556300 |
| Transcript ID | LotjaGi3g1v0556300.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein NRT1/ PTR FAMILY 5.5; TAIR: AT1G22540.1 Major facilitator superfamily protein; Swiss-Prot: sp|Q0WP01|PTR9_ARATH Protein NRT1/ PTR FAMILY 5.10; TrEMBL-Plants: tr|I1LNN9|I1LNN9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0556300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:97427276..97430081) extracted from Lotus japonicus Gifu genome v1.2.
CGTGCTATATATCTTGTCTTGACATCTCAACTAAAGAAGAAATGAATGATTGTGGTGGAAGTGCGATGGCGGAATTGGAA GATGAGGAGGAGAGGGTATCACTGACACTAGATTCACAAGTAGGTGTGGTTGTTGATGGAGCCGTTGACTACAAAGGTCA ACCCTCCATCAGATCCAAATCTGGGTCATGGAAATCTGCTCGCTTTATCATCGGCGTGGAAGTGGCTGAGAGGATGGCAT ATTACGGGATTCAGGCGAATCTCATATCGTATCTCACAGGTCCACTCCACCAGAATACCGCCACCGCTGCTGAGAATGTC AATATCTGGTCAGGAACCGCTTCTTTGCTTCCTCTCTTTGGTGCCTTCCTTGCTGATTCTCTTCTCGGACGCTACCGCAC CATCATCCTCGCTTCCCTCATCTATATTTTGGTACCTACTATTTTTATTTACTTTTTACCATCATACTCTTTTTTCATTA TTACTTAACTAGCTAGTATTTTCTATTGTTATGTTGGTACATTTGTTTGATGCTAGATTGGCTTGATATGTATTACAGGG TCTAGGCTTGTTAACATTATCAGCTTTGCTTCCTTCCCTCACCAAATATGAGTGCCAACTTGACAGCAAATTCACATCAT GCTCTCCTCAGTTGCAAGTCATCTTGTTCTTTATCTCACTTTATCTGGTCGCCATTGGACAAGGTGGACATAAGCCCTGT GTTCAGGCTTTTGGGGCTGACCAATTTGATGAACGTCATCCAAAGGAGCACAAAGCTAGAAGCACATTCTTCAATTGGTG GTATTTTACCATGTGTGCAGGTTGTATGGCAACATTGTGGATCTTGAACTACATACAGGACAACCTTAGTTGGGTTATTG GATTTGGAATACCTTGTGTTGCAATGATTATTGCATTGCTTGTTTTCTTGCTTGGAACAACCACCTACAGGTTTAACATT CAGGAGTGTGACAAGATCAGTCCCTTTCTCAGAATTGGCCGTGTATTTCTTGCAGCTATAAGAAATCGGCAAACTACCAT ATCAAGCATGTCTATAGAAGAGGAATCTCGTGGAATACTTCCTCATCAAAATTCTGAACAATTCAAGTAAGAATCGCGAT GCTGATTTCTGCTTGTGTCAAAGTATTATAAATAATTTATATTTCTAATCTTATTTGGGTAGCACTAGGATTCTTTAAGA GCAAGTATGATGAATTACATTATATTCAATCTTTCACTTCTTAACGAATCAGTTATTGCACTCCAAAGGTTATGAGTATT TTCTACTTTGGCAGTTTCCTCAACAAGGCATTGTTAGCACCAAAGGGTTCTAAGGAAGAGGAGACTTGTAGCCTTACTGA GGTGGAAGAAGCAAAGGCAGTACTGAGGCTGGTTCCAATTTGGGCTACAACTCTAGTTTATGGTATCATCTTTGCTCAAA TTTTTACTTTTTTTACCAAACAAGGAGCAACTATGGAGAGAACAATATTTCCTGGTTTTGATATACCTGCTGCTTCTCTT CAAACGCTTGGCACCCTGGCCATTGTTATCTTCAGTCCCATATATGACAGGCTTTTTGTACCAATGGCAAGAGCTATCAC TGGGAAACACTCCGGCATCACAATGCTGCAAAGAATAGGGACTGGAATTTTTATATCCATAGTTACAATTGTACTTGCAG CTCTTGTTGAGATGAAAAGGTTAAAGACAGCACAAGAGTCAGGTCTTGTTGATGATCCTGGTGCAACAGTTCCAATGAGT ATATGGTGGTTGATTCCTCAGTATTTCTTGTTTGGAGTTTCTGAAGTTTTTACCATGGTTGGTCTGCAGGAATTTTTCTA TGATCAAGTCCCAAATGAACTAAGAAGCATGGGTCTTGCTCTCTACCTTAGTATCTTTGGTGTAGGGAGCTTTCTGAGCG GCTTCCTCATTTCTGTGATAGAAACGGTGACAGGAAAAGATGGCCAAGACAGTTGGTTTGCTAATAATCTCAATAAGGCG CATATTGATTACTTTTACTGGCTACTTGCTGGATTCAGTGTGGTGGGATTTGCAATGTTCATGTGCTTTGCAAAATCTTA TGTATATAATCACAAAGGAGCATCACGAGTATAGGATAGACAGTTGTTATATTCGGTTCTGTCATTCATTTTTATTTACT GATCTTCTTCCCTGTAGCTGCCATTAATTGTTGTCCTCATTGTCAATCTCCTCATGTATATTTTCTCTTATTTTTATTTC TTCTTGGGGTATCTGGTAAGGCACACGGGGGCTGGCCGTCTAAATGAAAGTATATACTCTCTCCGTTCCTAAATAACTGA CACTTTAAGATTGTTGCATAAGTATTACTCCCTCCGTTCCTAAATATAAGACCTAGTTTCAAAATTTTGAAGTTCCTAAA TATAAGACCTAGTTACAATAATCTAACAAAAGGTTTGTACTCTTCCATTTTTACCCTCCACATTAATTATATGTTTTCAA TTTCCAAGTTTTGATTACCACTTACCATTAATTAGTGAGAGAAAATGACAAAGGGTAAATATGGAGGAATATATGCATTT TTAAAAAACCAATACACTAATTGAACACATTTAATGTTTTCTTAGAAGCGCAATTTTTTGTATTAGGTCTTATATTTAGG AACGGAGGGAGTAAGAAATAGCAATTAATGTTCTTGTTTTATTAAAATTACAATGTAATTTCCTACTATACCCTTTATCT CTCATATTAATTCTAACTTTTCTACCACCAATAAATGAAGGTACAATTGGTAAAGTATAATTAATGTTCTCTTGAACTTT ATAATG
CDS sequence (LotjaGi3g1v0556300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATGATTGTGGTGGAAGTGCGATGGCGGAATTGGAAGATGAGGAGGAGAGGGTATCACTGACACTAGATTCACAAGT AGGTGTGGTTGTTGATGGAGCCGTTGACTACAAAGGTCAACCCTCCATCAGATCCAAATCTGGGTCATGGAAATCTGCTC GCTTTATCATCGGCGTGGAAGTGGCTGAGAGGATGGCATATTACGGGATTCAGGCGAATCTCATATCGTATCTCACAGGT CCACTCCACCAGAATACCGCCACCGCTGCTGAGAATGTCAATATCTGGTCAGGAACCGCTTCTTTGCTTCCTCTCTTTGG TGCCTTCCTTGCTGATTCTCTTCTCGGACGCTACCGCACCATCATCCTCGCTTCCCTCATCTATATTTTGGGTCTAGGCT TGTTAACATTATCAGCTTTGCTTCCTTCCCTCACCAAATATGAGTGCCAACTTGACAGCAAATTCACATCATGCTCTCCT CAGTTGCAAGTCATCTTGTTCTTTATCTCACTTTATCTGGTCGCCATTGGACAAGGTGGACATAAGCCCTGTGTTCAGGC TTTTGGGGCTGACCAATTTGATGAACGTCATCCAAAGGAGCACAAAGCTAGAAGCACATTCTTCAATTGGTGGTATTTTA CCATGTGTGCAGGTTGTATGGCAACATTGTGGATCTTGAACTACATACAGGACAACCTTAGTTGGGTTATTGGATTTGGA ATACCTTGTGTTGCAATGATTATTGCATTGCTTGTTTTCTTGCTTGGAACAACCACCTACAGGTTTAACATTCAGGAGTG TGACAAGATCAGTCCCTTTCTCAGAATTGGCCGTGTATTTCTTGCAGCTATAAGAAATCGGCAAACTACCATATCAAGCA TGTCTATAGAAGAGGAATCTCGTGGAATACTTCCTCATCAAAATTCTGAACAATTCAATTTCCTCAACAAGGCATTGTTA GCACCAAAGGGTTCTAAGGAAGAGGAGACTTGTAGCCTTACTGAGGTGGAAGAAGCAAAGGCAGTACTGAGGCTGGTTCC AATTTGGGCTACAACTCTAGTTTATGGTATCATCTTTGCTCAAATTTTTACTTTTTTTACCAAACAAGGAGCAACTATGG AGAGAACAATATTTCCTGGTTTTGATATACCTGCTGCTTCTCTTCAAACGCTTGGCACCCTGGCCATTGTTATCTTCAGT CCCATATATGACAGGCTTTTTGTACCAATGGCAAGAGCTATCACTGGGAAACACTCCGGCATCACAATGCTGCAAAGAAT AGGGACTGGAATTTTTATATCCATAGTTACAATTGTACTTGCAGCTCTTGTTGAGATGAAAAGGTTAAAGACAGCACAAG AGTCAGGTCTTGTTGATGATCCTGGTGCAACAGTTCCAATGAGTATATGGTGGTTGATTCCTCAGTATTTCTTGTTTGGA GTTTCTGAAGTTTTTACCATGGTTGGTCTGCAGGAATTTTTCTATGATCAAGTCCCAAATGAACTAAGAAGCATGGGTCT TGCTCTCTACCTTAGTATCTTTGGTGTAGGGAGCTTTCTGAGCGGCTTCCTCATTTCTGTGATAGAAACGGTGACAGGAA AAGATGGCCAAGACAGTTGGTTTGCTAATAATCTCAATAAGGCGCATATTGATTACTTTTACTGGCTACTTGCTGGATTC AGTGTGGTGGGATTTGCAATGTTCATGTGCTTTGCAAAATCTTATGTATATAATCACAAAGGAGCATCACGAGTATAG
Protein sequence (LotjaGi3g1v0556300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNDCGGSAMAELEDEEERVSLTLDSQVGVVVDGAVDYKGQPSIRSKSGSWKSARFIIGVEVAERMAYYGIQANLISYLTG PLHQNTATAAENVNIWSGTASLLPLFGAFLADSLLGRYRTIILASLIYILGLGLLTLSALLPSLTKYECQLDSKFTSCSP QLQVILFFISLYLVAIGQGGHKPCVQAFGADQFDERHPKEHKARSTFFNWWYFTMCAGCMATLWILNYIQDNLSWVIGFG IPCVAMIIALLVFLLGTTTYRFNIQECDKISPFLRIGRVFLAAIRNRQTTISSMSIEEESRGILPHQNSEQFNFLNKALL APKGSKEEETCSLTEVEEAKAVLRLVPIWATTLVYGIIFAQIFTFFTKQGATMERTIFPGFDIPAASLQTLGTLAIVIFS PIYDRLFVPMARAITGKHSGITMLQRIGTGIFISIVTIVLAALVEMKRLKTAQESGLVDDPGATVPMSIWWLIPQYFLFG VSEVFTMVGLQEFFYDQVPNELRSMGLALYLSIFGVGSFLSGFLISVIETVTGKDGQDSWFANNLNKAHIDYFYWLLAGF SVVGFAMFMCFAKSYVYNHKGASRV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 94 | 94 | - | – | |
| Gene3D | 22 | 585 | 564 | 2.9E-210 | – | |
| PANTHER | 27 | 582 | 556 | 0.0 | ||
| PANTHER | 27 | 582 | 556 | 0.0 | – | |
| SUPERFAMILY | 44 | 573 | 530 | 3.92E-31 | ||
| CDD | 50 | 577 | 528 | 0.0 | – | |
| Phobius | 95 | 115 | 21 | - | – | |
| ProSitePatterns | 107 | 131 | 25 | - | ||
| Phobius | 116 | 121 | 6 | - | – | |
| Pfam | 118 | 540 | 423 | 1.1E-99 | ||
| Phobius | 122 | 141 | 20 | - | – | |
| TMHMM | 122 | 144 | 23 | - | – | |
| Phobius | 142 | 160 | 19 | - | – | |
| TMHMM | 159 | 176 | 18 | - | – | |
| Phobius | 161 | 177 | 17 | - | – | |
| Phobius | 178 | 209 | 32 | - | – | |
| TMHMM | 207 | 229 | 23 | - | – | |
| Phobius | 210 | 229 | 20 | - | – | |
| Phobius | 230 | 234 | 5 | - | – | |
| TMHMM | 233 | 255 | 23 | - | – | |
| Phobius | 235 | 255 | 21 | - | – | |
| Phobius | 256 | 341 | 86 | - | – | |
| Phobius | 342 | 363 | 22 | - | – | |
| TMHMM | 345 | 367 | 23 | - | – | |
| Phobius | 364 | 382 | 19 | - | – | |
| Phobius | 383 | 403 | 21 | - | – | |
| TMHMM | 387 | 409 | 23 | - | – | |
| Phobius | 404 | 423 | 20 | - | – | |
| TMHMM | 422 | 444 | 23 | - | – | |
| Phobius | 424 | 444 | 21 | - | – | |
| Phobius | 445 | 475 | 31 | - | – | |
| TMHMM | 464 | 486 | 23 | - | – | |
| Phobius | 476 | 495 | 20 | - | – | |
| Phobius | 496 | 506 | 11 | - | – | |
| TMHMM | 506 | 528 | 23 | - | – | |
| Phobius | 507 | 532 | 26 | - | – | |
| Phobius | 533 | 551 | 19 | - | – | |
| TMHMM | 550 | 572 | 23 | - | – | |
| Phobius | 552 | 572 | 21 | - | – | |
| Phobius | 573 | 585 | 13 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Oligopeptide transport | The directed movement of oligopeptides into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Oligopeptides are molecules that contain a small number (2 to 20) of amino-acid residues connected by peptide linkages. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi3g1v0556300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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