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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0556300 |
| Transcript ID | LotjaGi3g1v0556300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein NRT1/ PTR FAMILY 5.5; TAIR: AT1G22540.1 Major facilitator superfamily protein; Swiss-Prot: sp|Q0WP01|PTR9_ARATH Protein NRT1/ PTR FAMILY 5.10; TrEMBL-Plants: tr|I1LNN9|I1LNN9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0556300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:97427968..97429998) extracted from Lotus japonicus Gifu genome v1.2.
GAGGAGGAGAGGGTATCACTGACACTAGATTCACAAGTAGGTGTGGTTGTTGATGGAGCCGTTGACTACAAAGGTCAACC CTCCATCAGATCCAAATCTGGGTCATGGAAATCTGCTCGCTTTATCATCGGCGTGGAAGTGGCTGAGAGGATGGCATATT ACGGGATTCAGGCGAATCTCATATCGTATCTCACAGGTCCACTCCACCAGAATACCGCCACCGCTGCTGAGAATGTCAAT ATCTGGTCAGGAACCGCTTCTTTGCTTCCTCTCTTTGGTGCCTTCCTTGCTGATTCTCTTCTCGGACGCTACCGCACCAT CATCCTCGCTTCCCTCATCTATATTTTGGTACCTACTATTTTTATTTACTTTTTACCATCATACTCTTTTTTCATTATTA CTTAACTAGCTAGTATTTTCTATTGTTATGTTGGTACATTTGTTTGATGCTAGATTGGCTTGATATGTATTACAGGGTCT AGGCTTGTTAACATTATCAGCTTTGCTTCCTTCCCTCACCAAATATGAGTGCCAACTTGACAGCAAATTCACATCATGCT CTCCTCAGTTGCAAGTCATCTTGTTCTTTATCTCACTTTATCTGGTCGCCATTGGACAAGGTGGACATAAGCCCTGTGTT CAGGCTTTTGGGGCTGACCAATTTGATGAACGTCATCCAAAGGAGCACAAAGCTAGAAGCACATTCTTCAATTGGTGGTA TTTTACCATGTGTGCAGGTTGTATGGCAACATTGTGGATCTTGAACTACATACAGGACAACCTTAGTTGGGTTATTGGAT TTGGAATACCTTGTGTTGCAATGATTATTGCATTGCTTGTTTTCTTGCTTGGAACAACCACCTACAGGTTTAACATTCAG GAGTGTGACAAGATCAGTCCCTTTCTCAGAATTGGCCGTGTATTTCTTGCAGCTATAAGAAATCGGCAAACTACCATATC AAGCATGTCTATAGAAGAGGAATCTCGTGGAATACTTCCTCATCAAAATTCTGAACAATTCAAGTAAGAATCGCGATGCT GATTTCTGCTTGTGTCAAAGTATTATAAATAATTTATATTTCTAATCTTATTTGGGTAGCACTAGGATTCTTTAAGAGCA AGTATGATGAATTACATTATATTCAATCTTTCACTTCTTAACGAATCAGTTATTGCACTCCAAAGGTTATGAGTATTTTC TACTTTGGCAGTTTCCTCAACAAGGCATTGTTAGCACCAAAGGGTTCTAAGGAAGAGGAGACTTGTAGCCTTACTGAGGT GGAAGAAGCAAAGGCAGTACTGAGGCTGGTTCCAATTTGGGCTACAACTCTAGTTTATGGTATCATCTTTGCTCAAATTT TTACTTTTTTTACCAAACAAGGAGCAACTATGGAGAGAACAATATTTCCTGGTTTTGATATACCTGCTGCTTCTCTTCAA ACGCTTGGCACCCTGGCCATTGTTATCTTCAGTCCCATATATGACAGGCTTTTTGTACCAATGGCAAGAGCTATCACTGG GAAACACTCCGGCATCACAATGCTGCAAAGAATAGGGACTGGAATTTTTATATCCATAGTTACAATTGTACTTGCAGCTC TTGTTGAGATGAAAAGGTTAAAGACAGCACAAGAGTCAGGTCTTGTTGATGATCCTGGTGCAACAGTTCCAATGAGTATA TGGTGGTTGATTCCTCAGTATTTCTTGTTTGGAGTTTCTGAAGTTTTTACCATGGTTGGTCTGCAGGAATTTTTCTATGA TCAAGTCCCAAATGAACTAAGAAGCATGGGTCTTGCTCTCTACCTTAGTATCTTTGGTGTAGGGAGCTTTCTGAGCGGCT TCCTCATTTCTGTGATAGAAACGGTGACAGGAAAAGATGGCCAAGACAGTTGGTTTGCTAATAATCTCAATAAGGCGCAT ATTGATTACTTTTACTGGCTACTTGCTGGATTCAGTGTGGTGGGATTTGCAATGTTCATGTGCTTTGCAAAATCTTATGT ATATAATCACAAAGGAGCATCACGAGTATAG
CDS sequence (LotjaGi3g1v0556300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCATATTACGGGATTCAGGCGAATCTCATATCGTATCTCACAGGTCCACTCCACCAGAATACCGCCACCGCTGCTGA GAATGTCAATATCTGGTCAGGAACCGCTTCTTTGCTTCCTCTCTTTGGTGCCTTCCTTGCTGATTCTCTTCTCGGACGCT ACCGCACCATCATCCTCGCTTCCCTCATCTATATTTTGGGTCTAGGCTTGTTAACATTATCAGCTTTGCTTCCTTCCCTC ACCAAATATGAGTGCCAACTTGACAGCAAATTCACATCATGCTCTCCTCAGTTGCAAGTCATCTTGTTCTTTATCTCACT TTATCTGGTCGCCATTGGACAAGGTGGACATAAGCCCTGTGTTCAGGCTTTTGGGGCTGACCAATTTGATGAACGTCATC CAAAGGAGCACAAAGCTAGAAGCACATTCTTCAATTGGTGGTATTTTACCATGTGTGCAGGTTGTATGGCAACATTGTGG ATCTTGAACTACATACAGGACAACCTTAGTTGGGTTATTGGATTTGGAATACCTTGTGTTGCAATGATTATTGCATTGCT TGTTTTCTTGCTTGGAACAACCACCTACAGGTTTAACATTCAGGAGTGTGACAAGATCAGTCCCTTTCTCAGAATTGGCC GTGTATTTCTTGCAGCTATAAGAAATCGGCAAACTACCATATCAAGCATGTCTATAGAAGAGGAATCTCGTGGTTTCCTC AACAAGGCATTGTTAGCACCAAAGGGTTCTAAGGAAGAGGAGACTTGTAGCCTTACTGAGGTGGAAGAAGCAAAGGCAGT ACTGAGGCTGGTTCCAATTTGGGCTACAACTCTAGTTTATGGTATCATCTTTGCTCAAATTTTTACTTTTTTTACCAAAC AAGGAGCAACTATGGAGAGAACAATATTTCCTGGTTTTGATATACCTGCTGCTTCTCTTCAAACGCTTGGCACCCTGGCC ATTGTTATCTTCAGTCCCATATATGACAGGCTTTTTGTACCAATGGCAAGAGCTATCACTGGGAAACACTCCGGCATCAC AATGCTGCAAAGAATAGGGACTGGAATTTTTATATCCATAGTTACAATTGTACTTGCAGCTCTTGTTGAGATGAAAAGGT TAAAGACAGCACAAGAGTCAGGTCTTGTTGATGATCCTGGTGCAACAGTTCCAATGAGTATATGGTGGTTGATTCCTCAG TATTTCTTGTTTGGAGTTTCTGAAGTTTTTACCATGGTTGGTCTGCAGGAATTTTTCTATGATCAAGTCCCAAATGAACT AAGAAGCATGGGTCTTGCTCTCTACCTTAGTATCTTTGGTGTAGGGAGCTTTCTGAGCGGCTTCCTCATTTCTGTGATAG AAACGGTGACAGGAAAAGATGGCCAAGACAGTTGGTTTGCTAATAATCTCAATAAGGCGCATATTGATTACTTTTACTGG CTACTTGCTGGATTCAGTGTGGTGGGATTTGCAATGTTCATGTGCTTTGCAAAATCTTATGTATATAATCACAAAGGAGC ATCACGAGTATAG
Protein sequence (LotjaGi3g1v0556300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAYYGIQANLISYLTGPLHQNTATAAENVNIWSGTASLLPLFGAFLADSLLGRYRTIILASLIYILGLGLLTLSALLPSL TKYECQLDSKFTSCSPQLQVILFFISLYLVAIGQGGHKPCVQAFGADQFDERHPKEHKARSTFFNWWYFTMCAGCMATLW ILNYIQDNLSWVIGFGIPCVAMIIALLVFLLGTTTYRFNIQECDKISPFLRIGRVFLAAIRNRQTTISSMSIEEESRGFL NKALLAPKGSKEEETCSLTEVEEAKAVLRLVPIWATTLVYGIIFAQIFTFFTKQGATMERTIFPGFDIPAASLQTLGTLA IVIFSPIYDRLFVPMARAITGKHSGITMLQRIGTGIFISIVTIVLAALVEMKRLKTAQESGLVDDPGATVPMSIWWLIPQ YFLFGVSEVFTMVGLQEFFYDQVPNELRSMGLALYLSIFGVGSFLSGFLISVIETVTGKDGQDSWFANNLNKAHIDYFYW LLAGFSVVGFAMFMCFAKSYVYNHKGASRV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 507 | 507 | 1.6E-286 | ||
| PANTHER | 1 | 507 | 507 | 1.6E-286 | – | |
| Phobius | 1 | 30 | 30 | - | – | |
| Gene3D | 1 | 510 | 510 | 4.6E-196 | – | |
| CDD | 1 | 502 | 502 | 0.0 | – | |
| SUPERFAMILY | 4 | 498 | 495 | 1.02E-29 | ||
| TMHMM | 29 | 51 | 23 | - | – | |
| Phobius | 31 | 51 | 21 | - | – | |
| ProSitePatterns | 43 | 67 | 25 | - | ||
| Phobius | 52 | 57 | 6 | - | – | |
| Pfam | 54 | 465 | 412 | 6.6E-98 | ||
| Phobius | 58 | 77 | 20 | - | – | |
| TMHMM | 58 | 80 | 23 | - | – | |
| Phobius | 78 | 96 | 19 | - | – | |
| TMHMM | 95 | 112 | 18 | - | – | |
| Phobius | 97 | 113 | 17 | - | – | |
| Phobius | 114 | 145 | 32 | - | – | |
| TMHMM | 143 | 165 | 23 | - | – | |
| Phobius | 146 | 165 | 20 | - | – | |
| Phobius | 166 | 170 | 5 | - | – | |
| TMHMM | 169 | 191 | 23 | - | – | |
| Phobius | 171 | 191 | 21 | - | – | |
| Phobius | 192 | 266 | 75 | - | – | |
| Phobius | 267 | 288 | 22 | - | – | |
| TMHMM | 270 | 292 | 23 | - | – | |
| Phobius | 289 | 307 | 19 | - | – | |
| Phobius | 308 | 328 | 21 | - | – | |
| TMHMM | 312 | 334 | 23 | - | – | |
| Phobius | 329 | 348 | 20 | - | – | |
| TMHMM | 347 | 369 | 23 | - | – | |
| Phobius | 349 | 369 | 21 | - | – | |
| Phobius | 370 | 400 | 31 | - | – | |
| TMHMM | 389 | 411 | 23 | - | – | |
| Phobius | 401 | 420 | 20 | - | – | |
| Phobius | 421 | 431 | 11 | - | – | |
| TMHMM | 431 | 453 | 23 | - | – | |
| Phobius | 432 | 457 | 26 | - | – | |
| Phobius | 458 | 476 | 19 | - | – | |
| TMHMM | 475 | 497 | 23 | - | – | |
| Phobius | 477 | 497 | 21 | - | – | |
| Phobius | 498 | 510 | 13 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Oligopeptide transport | The directed movement of oligopeptides into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Oligopeptides are molecules that contain a small number (2 to 20) of amino-acid residues connected by peptide linkages. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi3g1v0556300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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