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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0556500 |
| Transcript ID | LotjaGi3g1v0556500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Late embryogenesis abundant protein (LEA) family protein; TAIR: AT1G22600.1 Late embryogenesis abundant protein (LEA) family protein; Swiss-Prot: sp|Q91XE8|TM205_MOUSE Transmembrane protein 205; TrEMBL-Plants: tr|A0A0L9V8B7|A0A0L9V8B7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0556500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:97435841..97437545) extracted from Lotus japonicus Gifu genome v1.2.
TTTACATTCAACATTCCATTCCTCAAACAAATCAATCTGAACAAAGAAGAAGACACAATGATGAATGCTTTAGCGTTGAG CCTGTTGGTGGGTTCACTAGCAGCAGCGGGCATGTTCTCTCCAACACCGCCGAAGCAAGGAGCCAACACCATCGTCAAAG AAGGCCACAGGGTGGTGGTGGTTGAATACGACCAAGACGGTCATCAGAACACCAAAATCTCAATCTCCCCACCAGAACCA GATCACTCTGACTCCAACCTCCTTGATAACGCCAGAGACAAGATCAAAGAGGCTGCTTCCGTTTTCCCCAACATGCCGGG AACAGGAATGGCTGGTTCATCTTCATCACACTCACAGGATGCCTTTCTCCACGCTCCTAAAGACCTCATTTGCGATGCCT ACGGAAGGTGCAAGCACAAAATTGCCGACGCAATGGGGAAAGCCAAGGACAAGGCTCAAGAGGCCATTGAAAAAAAGAAG GACATTGACGGTGCTGTTGCTGATGCAGTTGGCAAGGCTAAAGACACTGTGTATGATAAAGCCAAAGAGACTGTGGAAAA AGGGATGGACACGGGCCAAACCATGAAGGACCATGTAGTTAGAAACGTGTCTCAGGCCACTCATACCGTCAAGCGTTTTG CAAGCACTGCTTTAGGACCCCTGGATTCTTCTGTCATGGGGGTGGCTAATTTGCTGGGTTTTGCCACGGCTTACGGAATG TGTGTGTGGATTACGTTTATCTCTAGCTATGTGCTGTCCAAGGCCATGCCAAGGCAACAATTTGTTGTGGTGCAGAGTAA GATTTACCCTGTTTATTTCAGGGCTATGGCTTATACTGTTGGAATCGCTCTATTGGGCCATGTCTTGGGACATAGAAACA CACTCTTCACTAGCAAGCCTCAGATGCTACAAGCATACAACCTTCTTGCCTCCCTTCTCACCATTTTCTTCAATTCTCTC TACTTGGAGCCTCGAGCCACTAAGGTATATATTGTTTCATTCAACCCAATTCAATTTACATTTGTAAGTTCTCTTCAATT TTTTGGTTTTGAAATTAGCATATTGATTAGTTTCTTTTCTGCTTGCCCTTTCATCAGGTGATGTTTGAAAGGATGAAACT AGAAAAAGAAGAAGGAAGAGGCAGGGAGGATATAAGTGGCAGTACACAAGAGCATGAGCGCACGCCTGATCCTAAAACAC CAACTCCAACTACCGGTACCGCAGTACTGTCACCTGCACAAGGGCACGATGCAGTGAGGTCAAGGATGATCAAGCTCAAC AACAAGCTCAAGAGACTGAATTCACACTCCTCACTCCTGAATATCCTCAATCTCATGTCTCTTACTTGGCATCTGGTCTA TTTGGCTCAGCGTGTTCACAGTGCTTGCTAAACCAAATACTTCCACTGATCTCGTTGTTGTTTTCTATAGTTGCTGACTT CTGTTTGTAATGATATTTTCATAGACCAAAAGACTGTATGTAGTCTGTAAGATTTCTTGTATCTTTGGGGTTTCAAACTC TCATCTATAGGTTTGTGAATATAGTGTTTACCAATCCTTGCAGTAAAGTATATTTATTGTGTTCATATTGTTGAAGATAA TGATAATGTGTTTTGTTAATTTTTCTACAGCCACTGGTAAGACCGTAAGATAATGAGTGCTTATTGATAATTTTCCCTTT TCAAAAATTTAAATGTAAAATAATA
CDS sequence (LotjaGi3g1v0556500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGAATGCTTTAGCGTTGAGCCTGTTGGTGGGTTCACTAGCAGCAGCGGGCATGTTCTCTCCAACACCGCCGAAGCA AGGAGCCAACACCATCGTCAAAGAAGGCCACAGGGTGGTGGTGGTTGAATACGACCAAGACGGTCATCAGAACACCAAAA TCTCAATCTCCCCACCAGAACCAGATCACTCTGACTCCAACCTCCTTGATAACGCCAGAGACAAGATCAAAGAGGCTGCT TCCGTTTTCCCCAACATGCCGGGAACAGGAATGGCTGGTTCATCTTCATCACACTCACAGGATGCCTTTCTCCACGCTCC TAAAGACCTCATTTGCGATGCCTACGGAAGGTGCAAGCACAAAATTGCCGACGCAATGGGGAAAGCCAAGGACAAGGCTC AAGAGGCCATTGAAAAAAAGAAGGACATTGACGGTGCTGTTGCTGATGCAGTTGGCAAGGCTAAAGACACTGTGTATGAT AAAGCCAAAGAGACTGTGGAAAAAGGGATGGACACGGGCCAAACCATGAAGGACCATGTAGTTAGAAACGTGTCTCAGGC CACTCATACCGTCAAGCGTTTTGCAAGCACTGCTTTAGGACCCCTGGATTCTTCTGTCATGGGGGTGGCTAATTTGCTGG GTTTTGCCACGGCTTACGGAATGTGTGTGTGGATTACGTTTATCTCTAGCTATGTGCTGTCCAAGGCCATGCCAAGGCAA CAATTTGTTGTGGTGCAGAGTAAGATTTACCCTGTTTATTTCAGGGCTATGGCTTATACTGTTGGAATCGCTCTATTGGG CCATGTCTTGGGACATAGAAACACACTCTTCACTAGCAAGCCTCAGATGCTACAAGCATACAACCTTCTTGCCTCCCTTC TCACCATTTTCTTCAATTCTCTCTACTTGGAGCCTCGAGCCACTAAGGTGATGTTTGAAAGGATGAAACTAGAAAAAGAA GAAGGAAGAGGCAGGGAGGATATAAGTGGCAGTACACAAGAGCATGAGCGCACGCCTGATCCTAAAACACCAACTCCAAC TACCGGTACCGCAGTACTGTCACCTGCACAAGGGCACGATGCAGTGAGGTCAAGGATGATCAAGCTCAACAACAAGCTCA AGAGACTGAATTCACACTCCTCACTCCTGAATATCCTCAATCTCATGTCTCTTACTTGGCATCTGGTCTATTTGGCTCAG CGTGTTCACAGTGCTTGCTAA
Protein sequence (LotjaGi3g1v0556500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMNALALSLLVGSLAAAGMFSPTPPKQGANTIVKEGHRVVVVEYDQDGHQNTKISISPPEPDHSDSNLLDNARDKIKEAA SVFPNMPGTGMAGSSSSHSQDAFLHAPKDLICDAYGRCKHKIADAMGKAKDKAQEAIEKKKDIDGAVADAVGKAKDTVYD KAKETVEKGMDTGQTMKDHVVRNVSQATHTVKRFASTALGPLDSSVMGVANLLGFATAYGMCVWITFISSYVLSKAMPRQ QFVVVQSKIYPVYFRAMAYTVGIALLGHVLGHRNTLFTSKPQMLQAYNLLASLLTIFFNSLYLEPRATKVMFERMKLEKE EGRGREDISGSTQEHERTPDPKTPTPTTGTAVLSPAQGHDAVRSRMIKLNNKLKRLNSHSSLLNILNLMSLTWHLVYLAQ RVHSAC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_NEGATIVE | 1 | 17 | 17 | - | – | |
| Phobius | 1 | 3 | 3 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 28 | 28 | - | – | |
| SignalP_EUK | 1 | 16 | 16 | - | – | |
| Phobius | 1 | 17 | 17 | - | – | |
| PANTHER | 1 | 196 | 196 | 2.1E-137 | – | |
| PANTHER | 1 | 196 | 196 | 2.1E-137 | – | |
| Phobius | 4 | 12 | 9 | - | – | |
| Phobius | 13 | 17 | 5 | - | – | |
| Phobius | 18 | 211 | 194 | - | – | |
| PANTHER | 144 | 406 | 263 | 2.1E-137 | – | |
| PANTHER | 144 | 406 | 263 | 2.1E-137 | – | |
| TMHMM | 206 | 228 | 23 | - | – | |
| Phobius | 212 | 232 | 21 | - | – | |
| Pfam | 214 | 315 | 102 | 3.1E-23 | ||
| Phobius | 233 | 251 | 19 | - | – | |
| TMHMM | 249 | 271 | 23 | - | – | |
| Phobius | 252 | 271 | 20 | - | – | |
| Phobius | 272 | 282 | 11 | - | – | |
| TMHMM | 281 | 303 | 23 | - | – | |
| Phobius | 283 | 303 | 21 | - | – | |
| Phobius | 304 | 381 | 78 | - | – | |
| MobiDBLite | 321 | 341 | 21 | - | – | |
| MobiDBLite | 321 | 359 | 39 | - | – | |
| Phobius | 382 | 400 | 19 | - | – | |
| Phobius | 401 | 406 | 6 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0556500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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